Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0927

Experiment: Chlorate 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0926 and Psest_0927 are separated by 111 nucleotidesPsest_0927 and Psest_0928 are separated by 44 nucleotides Psest_0926: Psest_0926 - Transcriptional regulator, at 1,004,019 to 1,004,945 _0926 Psest_0927: Psest_0927 - zinc-binding alcohol dehydrogenase family protein, at 1,005,057 to 1,006,067 _0927 Psest_0928: Psest_0928 - Gluconolactonase, at 1,006,112 to 1,007,293 _0928 Position (kb) 1005 1006 1007Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1004.122 kb on + strand, within Psest_0926at 1004.123 kb on - strand, within Psest_0926at 1004.150 kb on + strand, within Psest_0926at 1004.150 kb on + strand, within Psest_0926at 1004.151 kb on - strand, within Psest_0926at 1004.220 kb on + strand, within Psest_0926at 1004.220 kb on + strand, within Psest_0926at 1004.221 kb on - strand, within Psest_0926at 1004.221 kb on - strand, within Psest_0926at 1004.221 kb on - strand, within Psest_0926at 1004.240 kb on - strand, within Psest_0926at 1004.297 kb on - strand, within Psest_0926at 1004.317 kb on - strand, within Psest_0926at 1004.317 kb on - strand, within Psest_0926at 1004.317 kb on - strand, within Psest_0926at 1004.368 kb on + strand, within Psest_0926at 1004.369 kb on - strand, within Psest_0926at 1004.369 kb on - strand, within Psest_0926at 1004.431 kb on + strand, within Psest_0926at 1004.431 kb on + strand, within Psest_0926at 1004.432 kb on - strand, within Psest_0926at 1004.512 kb on + strand, within Psest_0926at 1004.545 kb on - strand, within Psest_0926at 1004.628 kb on + strand, within Psest_0926at 1004.629 kb on - strand, within Psest_0926at 1004.629 kb on - strand, within Psest_0926at 1004.723 kb on + strand, within Psest_0926at 1004.753 kb on - strand, within Psest_0926at 1004.753 kb on - strand, within Psest_0926at 1005.032 kb on + strandat 1005.032 kb on + strandat 1005.033 kb on - strandat 1005.033 kb on - strandat 1005.033 kb on - strandat 1005.066 kb on - strandat 1005.082 kb on - strandat 1005.137 kb on + strandat 1005.224 kb on + strand, within Psest_0927at 1005.265 kb on + strand, within Psest_0927at 1005.265 kb on + strand, within Psest_0927at 1005.265 kb on + strand, within Psest_0927at 1005.321 kb on + strand, within Psest_0927at 1005.321 kb on + strand, within Psest_0927at 1005.321 kb on + strand, within Psest_0927at 1005.321 kb on + strand, within Psest_0927at 1005.322 kb on - strand, within Psest_0927at 1005.322 kb on - strand, within Psest_0927at 1005.322 kb on - strand, within Psest_0927at 1005.322 kb on - strand, within Psest_0927at 1005.322 kb on - strand, within Psest_0927at 1005.351 kb on + strand, within Psest_0927at 1005.351 kb on + strand, within Psest_0927at 1005.351 kb on + strand, within Psest_0927at 1005.351 kb on + strand, within Psest_0927at 1005.352 kb on - strand, within Psest_0927at 1005.352 kb on - strand, within Psest_0927at 1005.380 kb on + strand, within Psest_0927at 1005.380 kb on + strand, within Psest_0927at 1005.380 kb on + strand, within Psest_0927at 1005.381 kb on - strand, within Psest_0927at 1005.381 kb on - strand, within Psest_0927at 1005.381 kb on - strand, within Psest_0927at 1005.682 kb on + strand, within Psest_0927at 1005.682 kb on + strand, within Psest_0927at 1005.682 kb on + strand, within Psest_0927at 1005.682 kb on + strand, within Psest_0927at 1005.683 kb on - strand, within Psest_0927at 1005.741 kb on + strand, within Psest_0927at 1005.741 kb on + strand, within Psest_0927at 1005.741 kb on + strand, within Psest_0927at 1005.741 kb on + strand, within Psest_0927at 1005.741 kb on + strand, within Psest_0927at 1005.742 kb on - strand, within Psest_0927at 1005.742 kb on - strand, within Psest_0927at 1005.742 kb on - strand, within Psest_0927at 1005.742 kb on - strand, within Psest_0927at 1005.742 kb on - strand, within Psest_0927at 1005.742 kb on - strand, within Psest_0927at 1005.742 kb on - strand, within Psest_0927at 1005.742 kb on - strand, within Psest_0927at 1005.879 kb on + strand, within Psest_0927at 1005.953 kb on + strand, within Psest_0927at 1005.953 kb on + strand, within Psest_0927at 1005.953 kb on + strand, within Psest_0927at 1005.954 kb on - strand, within Psest_0927at 1005.954 kb on - strand, within Psest_0927at 1005.954 kb on - strand, within Psest_0927at 1005.954 kb on - strand, within Psest_0927at 1005.954 kb on - strand, within Psest_0927at 1005.954 kb on - strand, within Psest_0927at 1006.071 kb on - strandat 1006.071 kb on - strandat 1006.071 kb on - strandat 1006.071 kb on - strandat 1006.245 kb on + strand, within Psest_0928at 1006.246 kb on - strand, within Psest_0928at 1006.246 kb on - strand, within Psest_0928at 1006.301 kb on - strand, within Psest_0928at 1006.301 kb on - strand, within Psest_0928at 1006.301 kb on - strand, within Psest_0928at 1006.610 kb on + strand, within Psest_0928at 1006.610 kb on + strand, within Psest_0928at 1006.610 kb on + strand, within Psest_0928at 1006.610 kb on + strand, within Psest_0928at 1006.610 kb on + strand, within Psest_0928at 1006.610 kb on + strand, within Psest_0928at 1006.610 kb on + strand, within Psest_0928at 1006.610 kb on + strand, within Psest_0928at 1006.610 kb on + strand, within Psest_0928at 1006.610 kb on + strand, within Psest_0928at 1006.610 kb on + strand, within Psest_0928at 1006.611 kb on - strand, within Psest_0928at 1006.611 kb on - strand, within Psest_0928at 1006.611 kb on - strand, within Psest_0928at 1006.611 kb on - strand, within Psest_0928at 1006.611 kb on - strand, within Psest_0928at 1006.611 kb on - strand, within Psest_0928at 1006.611 kb on - strand, within Psest_0928at 1006.611 kb on - strand, within Psest_0928at 1006.611 kb on - strand, within Psest_0928at 1006.611 kb on - strand, within Psest_0928at 1006.611 kb on - strand, within Psest_0928at 1006.611 kb on - strand, within Psest_0928at 1006.611 kb on - strand, within Psest_0928at 1006.662 kb on - strand, within Psest_0928at 1006.892 kb on + strand, within Psest_0928at 1006.892 kb on + strand, within Psest_0928at 1006.892 kb on + strand, within Psest_0928at 1006.892 kb on + strand, within Psest_0928at 1006.892 kb on + strand, within Psest_0928at 1006.892 kb on + strand, within Psest_0928at 1006.892 kb on + strand, within Psest_0928at 1006.892 kb on + strand, within Psest_0928at 1006.892 kb on + strand, within Psest_0928at 1006.893 kb on - strand, within Psest_0928at 1006.893 kb on - strand, within Psest_0928at 1006.893 kb on - strand, within Psest_0928at 1006.893 kb on - strand, within Psest_0928at 1006.893 kb on - strand, within Psest_0928at 1006.893 kb on - strand, within Psest_0928at 1007.061 kb on - strand, within Psest_0928

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
remove
1,004,122 + Psest_0926 0.11 +0.4
1,004,123 - Psest_0926 0.11 -1.4
1,004,150 + Psest_0926 0.14 -1.7
1,004,150 + Psest_0926 0.14 +1.0
1,004,151 - Psest_0926 0.14 -0.4
1,004,220 + Psest_0926 0.22 -0.2
1,004,220 + Psest_0926 0.22 +1.7
1,004,221 - Psest_0926 0.22 -1.5
1,004,221 - Psest_0926 0.22 -0.4
1,004,221 - Psest_0926 0.22 -1.3
1,004,240 - Psest_0926 0.24 +0.1
1,004,297 - Psest_0926 0.30 -2.6
1,004,317 - Psest_0926 0.32 +3.8
1,004,317 - Psest_0926 0.32 +1.7
1,004,317 - Psest_0926 0.32 +0.1
1,004,368 + Psest_0926 0.38 -0.5
1,004,369 - Psest_0926 0.38 -1.7
1,004,369 - Psest_0926 0.38 -0.3
1,004,431 + Psest_0926 0.44 -0.3
1,004,431 + Psest_0926 0.44 -1.3
1,004,432 - Psest_0926 0.45 -1.8
1,004,512 + Psest_0926 0.53 -1.8
1,004,545 - Psest_0926 0.57 -0.1
1,004,628 + Psest_0926 0.66 +0.5
1,004,629 - Psest_0926 0.66 -0.5
1,004,629 - Psest_0926 0.66 +0.6
1,004,723 + Psest_0926 0.76 -2.4
1,004,753 - Psest_0926 0.79 -0.0
1,004,753 - Psest_0926 0.79 -3.0
1,005,032 + -2.3
1,005,032 + -1.1
1,005,033 - -1.3
1,005,033 - -1.2
1,005,033 - -0.4
1,005,066 - -0.9
1,005,082 - +0.6
1,005,137 + -0.7
1,005,224 + Psest_0927 0.17 +0.8
1,005,265 + Psest_0927 0.21 -3.3
1,005,265 + Psest_0927 0.21 -0.3
1,005,265 + Psest_0927 0.21 -2.6
1,005,321 + Psest_0927 0.26 +2.9
1,005,321 + Psest_0927 0.26 -0.5
1,005,321 + Psest_0927 0.26 -0.8
1,005,321 + Psest_0927 0.26 -1.7
1,005,322 - Psest_0927 0.26 -0.9
1,005,322 - Psest_0927 0.26 -1.7
1,005,322 - Psest_0927 0.26 +0.9
1,005,322 - Psest_0927 0.26 -0.8
1,005,322 - Psest_0927 0.26 -0.2
1,005,351 + Psest_0927 0.29 -0.5
1,005,351 + Psest_0927 0.29 -2.3
1,005,351 + Psest_0927 0.29 +1.3
1,005,351 + Psest_0927 0.29 -0.7
1,005,352 - Psest_0927 0.29 +1.7
1,005,352 - Psest_0927 0.29 -2.0
1,005,380 + Psest_0927 0.32 +1.7
1,005,380 + Psest_0927 0.32 -2.7
1,005,380 + Psest_0927 0.32 -1.5
1,005,381 - Psest_0927 0.32 +0.9
1,005,381 - Psest_0927 0.32 -1.8
1,005,381 - Psest_0927 0.32 -1.6
1,005,682 + Psest_0927 0.62 -0.7
1,005,682 + Psest_0927 0.62 -1.6
1,005,682 + Psest_0927 0.62 -1.8
1,005,682 + Psest_0927 0.62 +0.2
1,005,683 - Psest_0927 0.62 -1.4
1,005,741 + Psest_0927 0.68 -2.5
1,005,741 + Psest_0927 0.68 -1.5
1,005,741 + Psest_0927 0.68 -0.9
1,005,741 + Psest_0927 0.68 -2.0
1,005,741 + Psest_0927 0.68 +2.2
1,005,742 - Psest_0927 0.68 -1.5
1,005,742 - Psest_0927 0.68 +1.5
1,005,742 - Psest_0927 0.68 -1.4
1,005,742 - Psest_0927 0.68 -0.6
1,005,742 - Psest_0927 0.68 -0.8
1,005,742 - Psest_0927 0.68 -0.1
1,005,742 - Psest_0927 0.68 -0.5
1,005,742 - Psest_0927 0.68 +0.1
1,005,879 + Psest_0927 0.81 -0.3
1,005,953 + Psest_0927 0.89 +0.1
1,005,953 + Psest_0927 0.89 -3.7
1,005,953 + Psest_0927 0.89 -0.9
1,005,954 - Psest_0927 0.89 +0.4
1,005,954 - Psest_0927 0.89 +1.2
1,005,954 - Psest_0927 0.89 -0.2
1,005,954 - Psest_0927 0.89 -2.5
1,005,954 - Psest_0927 0.89 -1.0
1,005,954 - Psest_0927 0.89 +0.1
1,006,071 - -2.3
1,006,071 - -0.9
1,006,071 - +2.1
1,006,071 - -0.1
1,006,245 + Psest_0928 0.11 -1.3
1,006,246 - Psest_0928 0.11 -1.9
1,006,246 - Psest_0928 0.11 +1.3
1,006,301 - Psest_0928 0.16 +0.2
1,006,301 - Psest_0928 0.16 +0.8
1,006,301 - Psest_0928 0.16 +0.1
1,006,610 + Psest_0928 0.42 +1.4
1,006,610 + Psest_0928 0.42 -0.4
1,006,610 + Psest_0928 0.42 -1.5
1,006,610 + Psest_0928 0.42 -1.3
1,006,610 + Psest_0928 0.42 -0.7
1,006,610 + Psest_0928 0.42 -2.0
1,006,610 + Psest_0928 0.42 -0.9
1,006,610 + Psest_0928 0.42 +0.5
1,006,610 + Psest_0928 0.42 -0.9
1,006,610 + Psest_0928 0.42 -0.8
1,006,610 + Psest_0928 0.42 -0.9
1,006,611 - Psest_0928 0.42 -0.2
1,006,611 - Psest_0928 0.42 -2.5
1,006,611 - Psest_0928 0.42 -1.6
1,006,611 - Psest_0928 0.42 -0.5
1,006,611 - Psest_0928 0.42 -0.7
1,006,611 - Psest_0928 0.42 +0.1
1,006,611 - Psest_0928 0.42 -0.4
1,006,611 - Psest_0928 0.42 -2.4
1,006,611 - Psest_0928 0.42 +0.6
1,006,611 - Psest_0928 0.42 +0.1
1,006,611 - Psest_0928 0.42 -1.5
1,006,611 - Psest_0928 0.42 -2.0
1,006,611 - Psest_0928 0.42 +1.1
1,006,662 - Psest_0928 0.47 -1.9
1,006,892 + Psest_0928 0.66 -2.3
1,006,892 + Psest_0928 0.66 -0.4
1,006,892 + Psest_0928 0.66 -3.9
1,006,892 + Psest_0928 0.66 +0.1
1,006,892 + Psest_0928 0.66 -0.3
1,006,892 + Psest_0928 0.66 -0.1
1,006,892 + Psest_0928 0.66 -1.8
1,006,892 + Psest_0928 0.66 -1.4
1,006,892 + Psest_0928 0.66 -1.0
1,006,893 - Psest_0928 0.66 +1.4
1,006,893 - Psest_0928 0.66 +0.2
1,006,893 - Psest_0928 0.66 -0.4
1,006,893 - Psest_0928 0.66 +0.7
1,006,893 - Psest_0928 0.66 +0.3
1,006,893 - Psest_0928 0.66 -1.3
1,007,061 - Psest_0928 0.80 +1.5

Or see this region's nucleotide sequence