Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09130

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09120 and PGA1_c09130 overlap by 1 nucleotidesPGA1_c09130 and PGA1_c09140 overlap by 4 nucleotidesPGA1_c09140 and PGA1_c09150 overlap by 4 nucleotides PGA1_c09120: PGA1_c09120 - biotin synthase BioB, at 937,745 to 938,722 _c09120 PGA1_c09130: PGA1_c09130 - 8-amino-7-oxononanoate synthase BioF, at 938,722 to 939,861 _c09130 PGA1_c09140: PGA1_c09140 - dethiobiotin synthetase BioD, at 939,858 to 940,499 _c09140 PGA1_c09150: PGA1_c09150 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA, at 940,496 to 941,794 _c09150 Position (kb) 938 939 940Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 937.724 kb on - strandat 937.739 kb on - strandat 937.762 kb on + strandat 937.772 kb on + strandat 937.921 kb on + strand, within PGA1_c09120at 937.929 kb on - strand, within PGA1_c09120at 937.963 kb on + strand, within PGA1_c09120at 937.981 kb on + strand, within PGA1_c09120at 938.067 kb on + strand, within PGA1_c09120at 938.139 kb on + strand, within PGA1_c09120at 938.145 kb on + strand, within PGA1_c09120at 938.145 kb on + strand, within PGA1_c09120at 938.165 kb on + strand, within PGA1_c09120at 938.190 kb on - strand, within PGA1_c09120at 938.241 kb on - strand, within PGA1_c09120at 938.262 kb on + strand, within PGA1_c09120at 938.343 kb on - strand, within PGA1_c09120at 938.356 kb on + strand, within PGA1_c09120at 938.419 kb on - strand, within PGA1_c09120at 938.467 kb on + strand, within PGA1_c09120at 938.564 kb on + strand, within PGA1_c09120at 938.839 kb on - strand, within PGA1_c09130at 938.839 kb on - strand, within PGA1_c09130at 938.901 kb on - strand, within PGA1_c09130at 938.997 kb on + strand, within PGA1_c09130at 938.997 kb on + strand, within PGA1_c09130at 938.997 kb on + strand, within PGA1_c09130at 938.997 kb on + strand, within PGA1_c09130at 938.997 kb on + strand, within PGA1_c09130at 939.005 kb on - strand, within PGA1_c09130at 939.005 kb on - strand, within PGA1_c09130at 939.005 kb on - strand, within PGA1_c09130at 939.081 kb on + strand, within PGA1_c09130at 939.084 kb on - strand, within PGA1_c09130at 939.207 kb on + strand, within PGA1_c09130at 939.207 kb on + strand, within PGA1_c09130at 939.207 kb on + strand, within PGA1_c09130at 939.233 kb on + strand, within PGA1_c09130at 939.323 kb on + strand, within PGA1_c09130at 939.353 kb on + strand, within PGA1_c09130at 939.357 kb on + strand, within PGA1_c09130at 939.365 kb on + strand, within PGA1_c09130at 939.401 kb on + strand, within PGA1_c09130at 939.412 kb on + strand, within PGA1_c09130at 939.430 kb on + strand, within PGA1_c09130at 939.476 kb on - strand, within PGA1_c09130at 939.493 kb on - strand, within PGA1_c09130at 939.528 kb on + strand, within PGA1_c09130at 939.533 kb on + strand, within PGA1_c09130at 939.541 kb on - strand, within PGA1_c09130at 939.604 kb on - strand, within PGA1_c09130at 939.634 kb on + strand, within PGA1_c09130at 939.646 kb on + strand, within PGA1_c09130at 939.661 kb on + strand, within PGA1_c09130at 939.696 kb on + strand, within PGA1_c09130at 939.696 kb on + strand, within PGA1_c09130at 939.696 kb on + strand, within PGA1_c09130at 939.696 kb on + strand, within PGA1_c09130at 939.696 kb on + strand, within PGA1_c09130at 939.704 kb on - strand, within PGA1_c09130at 939.719 kb on + strand, within PGA1_c09130at 939.727 kb on - strand, within PGA1_c09130at 939.807 kb on + strandat 939.807 kb on + strandat 939.812 kb on + strandat 939.815 kb on - strandat 939.820 kb on - strandat 939.829 kb on + strandat 939.945 kb on - strand, within PGA1_c09140at 939.997 kb on + strand, within PGA1_c09140at 940.023 kb on - strand, within PGA1_c09140at 940.033 kb on - strand, within PGA1_c09140at 940.084 kb on - strand, within PGA1_c09140at 940.156 kb on + strand, within PGA1_c09140at 940.252 kb on + strand, within PGA1_c09140at 940.300 kb on + strand, within PGA1_c09140at 940.308 kb on - strand, within PGA1_c09140at 940.311 kb on + strand, within PGA1_c09140at 940.362 kb on - strand, within PGA1_c09140at 940.458 kb on + strandat 940.486 kb on - strandat 940.486 kb on - strandat 940.511 kb on - strandat 940.549 kb on + strandat 940.549 kb on + strandat 940.549 kb on + strandat 940.557 kb on - strandat 940.557 kb on - strandat 940.557 kb on - strandat 940.621 kb on + strandat 940.657 kb on - strand, within PGA1_c09150at 940.725 kb on - strand, within PGA1_c09150at 940.730 kb on - strand, within PGA1_c09150

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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937,724 - -0.1
937,739 - -2.9
937,762 + +0.3
937,772 + -1.0
937,921 + PGA1_c09120 0.18 -1.9
937,929 - PGA1_c09120 0.19 -2.2
937,963 + PGA1_c09120 0.22 -2.2
937,981 + PGA1_c09120 0.24 -1.0
938,067 + PGA1_c09120 0.33 -2.3
938,139 + PGA1_c09120 0.40 -1.9
938,145 + PGA1_c09120 0.41 +0.1
938,145 + PGA1_c09120 0.41 -3.1
938,165 + PGA1_c09120 0.43 -1.4
938,190 - PGA1_c09120 0.46 -3.8
938,241 - PGA1_c09120 0.51 -1.4
938,262 + PGA1_c09120 0.53 +0.1
938,343 - PGA1_c09120 0.61 -2.0
938,356 + PGA1_c09120 0.62 +0.6
938,419 - PGA1_c09120 0.69 -2.1
938,467 + PGA1_c09120 0.74 -2.9
938,564 + PGA1_c09120 0.84 -1.4
938,839 - PGA1_c09130 0.10 -2.1
938,839 - PGA1_c09130 0.10 -1.1
938,901 - PGA1_c09130 0.16 -1.0
938,997 + PGA1_c09130 0.24 -0.2
938,997 + PGA1_c09130 0.24 +0.6
938,997 + PGA1_c09130 0.24 -0.9
938,997 + PGA1_c09130 0.24 -0.4
938,997 + PGA1_c09130 0.24 +0.4
939,005 - PGA1_c09130 0.25 -0.8
939,005 - PGA1_c09130 0.25 -0.2
939,005 - PGA1_c09130 0.25 -0.9
939,081 + PGA1_c09130 0.31 -1.3
939,084 - PGA1_c09130 0.32 -1.4
939,207 + PGA1_c09130 0.43 -1.9
939,207 + PGA1_c09130 0.43 -1.2
939,207 + PGA1_c09130 0.43 -0.4
939,233 + PGA1_c09130 0.45 -0.1
939,323 + PGA1_c09130 0.53 -0.7
939,353 + PGA1_c09130 0.55 -0.4
939,357 + PGA1_c09130 0.56 +2.7
939,365 + PGA1_c09130 0.56 -0.0
939,401 + PGA1_c09130 0.60 -1.7
939,412 + PGA1_c09130 0.61 +1.0
939,430 + PGA1_c09130 0.62 -1.0
939,476 - PGA1_c09130 0.66 -1.6
939,493 - PGA1_c09130 0.68 -0.9
939,528 + PGA1_c09130 0.71 -0.8
939,533 + PGA1_c09130 0.71 -0.3
939,541 - PGA1_c09130 0.72 -0.9
939,604 - PGA1_c09130 0.77 +0.7
939,634 + PGA1_c09130 0.80 -0.5
939,646 + PGA1_c09130 0.81 -0.3
939,661 + PGA1_c09130 0.82 -0.1
939,696 + PGA1_c09130 0.85 -0.1
939,696 + PGA1_c09130 0.85 -1.0
939,696 + PGA1_c09130 0.85 -1.9
939,696 + PGA1_c09130 0.85 +0.4
939,696 + PGA1_c09130 0.85 -0.9
939,704 - PGA1_c09130 0.86 -2.3
939,719 + PGA1_c09130 0.87 -0.7
939,727 - PGA1_c09130 0.88 -0.6
939,807 + -1.3
939,807 + -2.4
939,812 + -1.4
939,815 - -0.5
939,820 - -0.6
939,829 + -0.9
939,945 - PGA1_c09140 0.14 +0.4
939,997 + PGA1_c09140 0.22 +0.8
940,023 - PGA1_c09140 0.26 -0.4
940,033 - PGA1_c09140 0.27 -0.7
940,084 - PGA1_c09140 0.35 -0.9
940,156 + PGA1_c09140 0.46 +1.8
940,252 + PGA1_c09140 0.61 -1.0
940,300 + PGA1_c09140 0.69 -0.6
940,308 - PGA1_c09140 0.70 -2.9
940,311 + PGA1_c09140 0.71 -0.7
940,362 - PGA1_c09140 0.79 -0.8
940,458 + -0.6
940,486 - -1.6
940,486 - -0.7
940,511 - -1.9
940,549 + -1.1
940,549 + -1.2
940,549 + -2.1
940,557 - -0.1
940,557 - +0.4
940,557 - -0.8
940,621 + -0.1
940,657 - PGA1_c09150 0.12 -2.0
940,725 - PGA1_c09150 0.18 -0.2
940,730 - PGA1_c09150 0.18 +0.4

Or see this region's nucleotide sequence