Experiment: Chlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0917 and Psest_0918 are separated by 356 nucleotides Psest_0918 and Psest_0919 are separated by 112 nucleotides
Psest_0917: Psest_0917 - SEC-C motif., at 996,938 to 998,293
_0917
Psest_0918: Psest_0918 - Predicted permease, DMT superfamily, at 998,650 to 999,558
_0918
Psest_0919: Psest_0919 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 999,671 to 1,000,627
_0919
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 997.682 kb on - strand, within Psest_0917 at 997.704 kb on + strand, within Psest_0917 at 997.768 kb on - strand, within Psest_0917 at 997.878 kb on + strand, within Psest_0917 at 997.884 kb on + strand, within Psest_0917 at 997.884 kb on + strand, within Psest_0917 at 997.884 kb on + strand, within Psest_0917 at 997.884 kb on + strand, within Psest_0917 at 997.885 kb on - strand, within Psest_0917 at 997.888 kb on + strand, within Psest_0917 at 997.952 kb on + strand, within Psest_0917 at 997.990 kb on + strand, within Psest_0917 at 998.018 kb on + strand, within Psest_0917 at 998.018 kb on + strand, within Psest_0917 at 998.022 kb on + strand, within Psest_0917 at 998.023 kb on - strand, within Psest_0917 at 998.055 kb on + strand, within Psest_0917 at 998.080 kb on + strand, within Psest_0917 at 998.081 kb on - strand, within Psest_0917 at 998.081 kb on - strand, within Psest_0917 at 998.089 kb on - strand, within Psest_0917 at 998.089 kb on - strand, within Psest_0917 at 998.089 kb on - strand, within Psest_0917 at 998.129 kb on + strand, within Psest_0917 at 998.129 kb on + strand, within Psest_0917 at 998.130 kb on - strand, within Psest_0917 at 998.270 kb on + strand at 998.270 kb on + strand at 998.271 kb on - strand at 998.271 kb on - strand at 998.271 kb on - strand at 998.325 kb on + strand at 998.354 kb on + strand at 998.354 kb on + strand at 998.354 kb on + strand at 998.354 kb on + strand at 998.447 kb on + strand at 998.486 kb on + strand at 998.486 kb on + strand at 998.486 kb on + strand at 998.486 kb on + strand at 998.487 kb on - strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.673 kb on - strand at 998.756 kb on + strand, within Psest_0918 at 998.756 kb on + strand, within Psest_0918 at 998.756 kb on + strand, within Psest_0918 at 998.756 kb on + strand, within Psest_0918 at 998.767 kb on + strand, within Psest_0918 at 998.861 kb on + strand, within Psest_0918 at 998.861 kb on + strand, within Psest_0918 at 998.862 kb on - strand, within Psest_0918 at 998.862 kb on - strand, within Psest_0918 at 998.862 kb on - strand, within Psest_0918 at 998.867 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 999.047 kb on - strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.128 kb on - strand, within Psest_0918 at 999.128 kb on - strand, within Psest_0918 at 999.128 kb on - strand, within Psest_0918 at 999.156 kb on + strand, within Psest_0918 at 999.156 kb on + strand, within Psest_0918 at 999.156 kb on + strand, within Psest_0918 at 999.157 kb on - strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.161 kb on - strand, within Psest_0918 at 999.196 kb on - strand, within Psest_0918 at 999.237 kb on + strand, within Psest_0918 at 999.316 kb on + strand, within Psest_0918 at 999.317 kb on - strand, within Psest_0918 at 999.362 kb on + strand, within Psest_0918 at 999.373 kb on + strand, within Psest_0918 at 999.374 kb on - strand, within Psest_0918 at 999.374 kb on - strand, within Psest_0918 at 999.497 kb on + strand at 999.498 kb on - strand at 999.498 kb on - strand at 999.498 kb on - strand at 999.561 kb on - strand at 999.652 kb on + strand at 999.652 kb on + strand at 999.652 kb on + strand at 999.652 kb on + strand at 999.653 kb on - strand at 999.653 kb on - strand at 999.653 kb on - strand at 999.653 kb on - strand at 999.654 kb on + strand at 999.654 kb on + strand at 999.654 kb on + strand at 999.654 kb on + strand at 999.679 kb on + strand at 999.679 kb on + strand at 999.679 kb on + strand at 999.679 kb on + strand at 999.679 kb on + strand at 999.680 kb on - strand at 999.680 kb on - strand at 999.734 kb on + strand at 999.734 kb on + strand at 999.735 kb on - strand at 999.735 kb on - strand at 999.735 kb on - strand at 999.735 kb on - strand at 999.735 kb on - strand at 1000.123 kb on + strand, within Psest_0919 at 1000.124 kb on - strand, within Psest_0919 at 1000.124 kb on - strand, within Psest_0919 at 1000.260 kb on + strand, within Psest_0919
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 75 mM remove 997,682 - Psest_0917 0.55 -2.8 997,704 + Psest_0917 0.56 -1.0 997,768 - Psest_0917 0.61 -2.3 997,878 + Psest_0917 0.69 -3.0 997,884 + Psest_0917 0.70 -0.4 997,884 + Psest_0917 0.70 -0.9 997,884 + Psest_0917 0.70 -1.5 997,884 + Psest_0917 0.70 +0.7 997,885 - Psest_0917 0.70 -1.4 997,888 + Psest_0917 0.70 +0.1 997,952 + Psest_0917 0.75 +0.9 997,990 + Psest_0917 0.78 -3.8 998,018 + Psest_0917 0.80 +0.3 998,018 + Psest_0917 0.80 -1.3 998,022 + Psest_0917 0.80 -1.7 998,023 - Psest_0917 0.80 +2.6 998,055 + Psest_0917 0.82 -2.7 998,080 + Psest_0917 0.84 -1.9 998,081 - Psest_0917 0.84 -1.4 998,081 - Psest_0917 0.84 +1.6 998,089 - Psest_0917 0.85 -1.4 998,089 - Psest_0917 0.85 -2.6 998,089 - Psest_0917 0.85 -1.7 998,129 + Psest_0917 0.88 -1.1 998,129 + Psest_0917 0.88 -1.6 998,130 - Psest_0917 0.88 -0.2 998,270 + -0.6 998,270 + -0.3 998,271 - -2.6 998,271 - -0.8 998,271 - -0.6 998,325 + -1.1 998,354 + -0.6 998,354 + -1.4 998,354 + -1.3 998,354 + +0.9 998,447 + -0.8 998,486 + +0.3 998,486 + +0.1 998,486 + +0.5 998,486 + -2.6 998,487 - -0.5 998,668 + -2.6 998,668 + +0.3 998,668 + -0.7 998,668 + -0.1 998,668 + -1.2 998,668 + +0.9 998,668 + -1.3 998,668 + -1.6 998,668 + -0.0 998,668 + -0.7 998,669 - -0.8 998,669 - -2.3 998,669 - -2.5 998,669 - +0.1 998,669 - -0.6 998,669 - -1.8 998,669 - -0.6 998,669 - -0.4 998,669 - +5.2 998,669 - -0.1 998,669 - -0.5 998,672 + -1.0 998,672 + -2.1 998,672 + -1.1 998,672 + +0.1 998,672 + -1.6 998,672 + -1.6 998,672 + +2.7 998,672 + -2.2 998,672 + -2.8 998,672 + +1.7 998,672 + -0.7 998,673 - -0.8 998,756 + Psest_0918 0.12 -0.5 998,756 + Psest_0918 0.12 +0.1 998,756 + Psest_0918 0.12 +1.4 998,756 + Psest_0918 0.12 -1.6 998,767 + Psest_0918 0.13 -2.5 998,861 + Psest_0918 0.23 -2.4 998,861 + Psest_0918 0.23 -1.5 998,862 - Psest_0918 0.23 -0.6 998,862 - Psest_0918 0.23 -2.6 998,862 - Psest_0918 0.23 +0.7 998,867 + Psest_0918 0.24 +1.3 998,954 + Psest_0918 0.33 -0.9 998,954 + Psest_0918 0.33 -0.6 998,954 + Psest_0918 0.33 -1.2 998,954 + Psest_0918 0.33 -1.8 998,954 + Psest_0918 0.33 -2.2 998,954 + Psest_0918 0.33 -1.2 998,954 + Psest_0918 0.33 -2.4 998,954 + Psest_0918 0.33 -2.2 998,954 + Psest_0918 0.33 -1.4 998,954 + Psest_0918 0.33 -1.2 998,954 + Psest_0918 0.33 -0.4 998,954 + Psest_0918 0.33 -0.8 998,954 + Psest_0918 0.33 -2.7 998,955 - Psest_0918 0.34 -1.9 998,955 - Psest_0918 0.34 -0.6 998,955 - Psest_0918 0.34 -0.2 998,955 - Psest_0918 0.34 -0.3 998,955 - Psest_0918 0.34 -1.0 998,955 - Psest_0918 0.34 -0.8 998,955 - Psest_0918 0.34 -2.1 998,955 - Psest_0918 0.34 -0.8 998,955 - Psest_0918 0.34 +0.3 998,955 - Psest_0918 0.34 -0.6 998,955 - Psest_0918 0.34 +1.8 998,955 - Psest_0918 0.34 -0.2 998,955 - Psest_0918 0.34 -1.0 999,047 - Psest_0918 0.44 -1.6 999,127 + Psest_0918 0.52 -3.6 999,127 + Psest_0918 0.52 -2.0 999,127 + Psest_0918 0.52 -2.1 999,127 + Psest_0918 0.52 +1.2 999,127 + Psest_0918 0.52 -1.5 999,127 + Psest_0918 0.52 -1.2 999,127 + Psest_0918 0.52 -0.6 999,127 + Psest_0918 0.52 -0.9 999,127 + Psest_0918 0.52 +0.1 999,127 + Psest_0918 0.52 -3.1 999,127 + Psest_0918 0.52 -1.0 999,127 + Psest_0918 0.52 -1.2 999,128 - Psest_0918 0.53 -2.3 999,128 - Psest_0918 0.53 -1.1 999,128 - Psest_0918 0.53 +1.0 999,156 + Psest_0918 0.56 -2.2 999,156 + Psest_0918 0.56 -2.0 999,156 + Psest_0918 0.56 +0.4 999,157 - Psest_0918 0.56 -1.1 999,160 + Psest_0918 0.56 -0.8 999,160 + Psest_0918 0.56 -0.6 999,160 + Psest_0918 0.56 +0.4 999,160 + Psest_0918 0.56 -1.5 999,161 - Psest_0918 0.56 -1.4 999,196 - Psest_0918 0.60 +1.1 999,237 + Psest_0918 0.65 -1.7 999,316 + Psest_0918 0.73 -0.1 999,317 - Psest_0918 0.73 -3.1 999,362 + Psest_0918 0.78 -1.4 999,373 + Psest_0918 0.80 -0.9 999,374 - Psest_0918 0.80 -1.9 999,374 - Psest_0918 0.80 -1.8 999,497 + -1.7 999,498 - -1.7 999,498 - +0.3 999,498 - +0.4 999,561 - -3.3 999,652 + -1.4 999,652 + -1.2 999,652 + +1.0 999,652 + -2.0 999,653 - +0.4 999,653 - -0.3 999,653 - -0.8 999,653 - +1.5 999,654 + +1.1 999,654 + +0.4 999,654 + +0.2 999,654 + -0.9 999,679 + -1.3 999,679 + -1.0 999,679 + -2.7 999,679 + -1.5 999,679 + -0.6 999,680 - -0.8 999,680 - -2.4 999,734 + -0.9 999,734 + +0.4 999,735 - -0.8 999,735 - -0.5 999,735 - +1.3 999,735 - -3.0 999,735 - -1.7 1,000,123 + Psest_0919 0.47 -0.8 1,000,124 - Psest_0919 0.47 -0.1 1,000,124 - Psest_0919 0.47 +0.7 1,000,260 + Psest_0919 0.62 -3.3
Or see this region's nucleotide sequence