Experiment: Chlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0897 and Psest_0898 overlap by 4 nucleotides Psest_0898 and Psest_0899 are separated by 78 nucleotides
Psest_0897: Psest_0897 - VRR-NUC domain., at 972,554 to 974,193
_0897
Psest_0898: Psest_0898 - hypothetical protein, at 974,190 to 974,696
_0898
Psest_0899: Psest_0899 - Excinuclease ATPase subunit, at 974,775 to 977,426
_0899
Position (kb) 974
975
976
977
978 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 973.795 kb on + strand, within Psest_0897 at 973.796 kb on - strand, within Psest_0897 at 973.796 kb on - strand, within Psest_0897 at 973.796 kb on - strand, within Psest_0897 at 973.829 kb on + strand, within Psest_0897 at 973.830 kb on - strand, within Psest_0897 at 973.853 kb on - strand, within Psest_0897 at 973.853 kb on - strand, within Psest_0897 at 973.947 kb on - strand, within Psest_0897 at 974.162 kb on + strand at 974.162 kb on + strand at 974.162 kb on + strand at 974.162 kb on + strand at 974.162 kb on + strand at 974.162 kb on + strand at 974.162 kb on + strand at 974.163 kb on - strand at 974.163 kb on - strand at 974.163 kb on - strand at 974.163 kb on - strand at 974.163 kb on - strand at 974.163 kb on - strand at 974.163 kb on - strand at 974.163 kb on - strand at 974.170 kb on + strand at 974.170 kb on + strand at 974.170 kb on + strand at 974.170 kb on + strand at 974.171 kb on - strand at 974.331 kb on + strand, within Psest_0898 at 974.332 kb on - strand, within Psest_0898 at 974.332 kb on - strand, within Psest_0898 at 974.332 kb on - strand, within Psest_0898 at 974.332 kb on - strand, within Psest_0898 at 974.344 kb on + strand, within Psest_0898 at 974.344 kb on + strand, within Psest_0898 at 974.350 kb on + strand, within Psest_0898 at 974.351 kb on - strand, within Psest_0898 at 974.351 kb on - strand, within Psest_0898 at 974.351 kb on - strand, within Psest_0898 at 974.351 kb on - strand, within Psest_0898 at 974.351 kb on - strand, within Psest_0898 at 974.419 kb on + strand, within Psest_0898 at 974.419 kb on + strand, within Psest_0898 at 974.420 kb on - strand, within Psest_0898 at 974.420 kb on - strand, within Psest_0898 at 974.559 kb on + strand, within Psest_0898 at 974.559 kb on + strand, within Psest_0898 at 974.559 kb on + strand, within Psest_0898 at 974.559 kb on + strand, within Psest_0898 at 974.560 kb on - strand, within Psest_0898 at 974.560 kb on - strand, within Psest_0898 at 974.761 kb on + strand at 974.761 kb on + strand at 974.761 kb on + strand at 974.761 kb on + strand at 974.761 kb on + strand at 974.761 kb on + strand at 974.769 kb on - strand at 974.786 kb on + strand at 974.786 kb on + strand at 974.786 kb on + strand at 974.787 kb on - strand at 974.787 kb on - strand at 974.787 kb on - strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.955 kb on + strand at 974.956 kb on - strand at 974.956 kb on - strand at 974.956 kb on - strand at 974.956 kb on - strand at 974.956 kb on - strand at 974.956 kb on - strand at 975.038 kb on - strand at 975.038 kb on - strand at 975.038 kb on - strand at 975.038 kb on - strand at 975.038 kb on - strand at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.153 kb on + strand, within Psest_0899 at 975.154 kb on - strand, within Psest_0899 at 975.154 kb on - strand, within Psest_0899 at 975.154 kb on - strand, within Psest_0899 at 975.154 kb on - strand, within Psest_0899 at 975.154 kb on - strand, within Psest_0899 at 975.154 kb on - strand, within Psest_0899 at 975.154 kb on - strand, within Psest_0899 at 975.196 kb on - strand, within Psest_0899 at 975.264 kb on + strand, within Psest_0899 at 975.264 kb on + strand, within Psest_0899 at 975.264 kb on + strand, within Psest_0899 at 975.265 kb on - strand, within Psest_0899 at 975.265 kb on - strand, within Psest_0899 at 975.265 kb on - strand, within Psest_0899 at 975.440 kb on + strand, within Psest_0899 at 975.440 kb on + strand, within Psest_0899 at 975.440 kb on + strand, within Psest_0899 at 975.440 kb on + strand, within Psest_0899 at 975.440 kb on + strand, within Psest_0899 at 975.441 kb on - strand, within Psest_0899 at 975.441 kb on - strand, within Psest_0899 at 975.441 kb on - strand, within Psest_0899 at 975.441 kb on - strand, within Psest_0899 at 975.474 kb on + strand, within Psest_0899 at 975.474 kb on + strand, within Psest_0899 at 975.534 kb on + strand, within Psest_0899 at 975.534 kb on + strand, within Psest_0899 at 975.534 kb on + strand, within Psest_0899 at 975.535 kb on - strand, within Psest_0899 at 975.535 kb on - strand, within Psest_0899 at 975.535 kb on - strand, within Psest_0899 at 975.535 kb on - strand, within Psest_0899 at 975.535 kb on - strand, within Psest_0899 at 975.564 kb on + strand, within Psest_0899 at 975.564 kb on + strand, within Psest_0899 at 975.565 kb on - strand, within Psest_0899 at 975.565 kb on - strand, within Psest_0899 at 975.890 kb on + strand, within Psest_0899 at 975.976 kb on + strand, within Psest_0899 at 975.976 kb on + strand, within Psest_0899 at 975.977 kb on - strand, within Psest_0899 at 975.988 kb on - strand, within Psest_0899 at 976.060 kb on + strand, within Psest_0899 at 976.060 kb on + strand, within Psest_0899 at 976.060 kb on + strand, within Psest_0899 at 976.060 kb on + strand, within Psest_0899 at 976.060 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.086 kb on + strand, within Psest_0899 at 976.087 kb on - strand, within Psest_0899 at 976.087 kb on - strand, within Psest_0899 at 976.087 kb on - strand, within Psest_0899 at 976.087 kb on - strand, within Psest_0899 at 976.087 kb on - strand, within Psest_0899 at 976.087 kb on - strand, within Psest_0899 at 976.087 kb on - strand, within Psest_0899 at 976.090 kb on + strand, within Psest_0899 at 976.090 kb on + strand, within Psest_0899 at 976.090 kb on + strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.091 kb on - strand, within Psest_0899 at 976.140 kb on + strand, within Psest_0899 at 976.140 kb on + strand, within Psest_0899 at 976.141 kb on - strand, within Psest_0899 at 976.141 kb on - strand, within Psest_0899 at 976.141 kb on - strand, within Psest_0899 at 976.141 kb on - strand, within Psest_0899 at 976.141 kb on - strand, within Psest_0899 at 976.141 kb on - strand, within Psest_0899 at 976.320 kb on - strand, within Psest_0899 at 976.636 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.701 kb on + strand, within Psest_0899 at 976.702 kb on - strand, within Psest_0899 at 976.702 kb on - strand, within Psest_0899 at 976.702 kb on - strand, within Psest_0899 at 976.702 kb on - strand, within Psest_0899 at 976.702 kb on - strand, within Psest_0899 at 976.702 kb on - strand, within Psest_0899 at 976.768 kb on - strand, within Psest_0899 at 976.870 kb on - strand, within Psest_0899 at 977.049 kb on + strand, within Psest_0899 at 977.151 kb on + strand, within Psest_0899 at 977.151 kb on + strand, within Psest_0899 at 977.151 kb on + strand, within Psest_0899 at 977.151 kb on + strand, within Psest_0899 at 977.152 kb on - strand, within Psest_0899 at 977.152 kb on - strand, within Psest_0899 at 977.152 kb on - strand, within Psest_0899 at 977.152 kb on - strand, within Psest_0899 at 977.245 kb on + strand at 977.424 kb on + strand at 977.424 kb on + strand at 977.429 kb on + strand at 977.429 kb on + strand at 977.429 kb on + strand at 977.429 kb on + strand at 977.429 kb on + strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.430 kb on - strand at 977.531 kb on + strand at 977.531 kb on + strand at 977.532 kb on - strand at 977.549 kb on - strand at 977.560 kb on + strand at 977.560 kb on + strand at 977.561 kb on - strand at 977.561 kb on - strand at 977.665 kb on + strand at 977.665 kb on + strand at 977.665 kb on + strand at 977.665 kb on + strand at 977.665 kb on + strand at 977.666 kb on - strand at 977.666 kb on - strand at 977.666 kb on - strand at 977.752 kb on + strand at 977.752 kb on + strand at 977.753 kb on - strand at 977.753 kb on - strand at 977.808 kb on - strand at 977.808 kb on - strand at 977.936 kb on + strand at 977.937 kb on - strand at 977.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 75 mM remove 973,795 + Psest_0897 0.76 -0.7 973,796 - Psest_0897 0.76 +0.5 973,796 - Psest_0897 0.76 +2.1 973,796 - Psest_0897 0.76 +2.5 973,829 + Psest_0897 0.78 -0.5 973,830 - Psest_0897 0.78 +0.7 973,853 - Psest_0897 0.79 -0.1 973,853 - Psest_0897 0.79 +0.3 973,947 - Psest_0897 0.85 +0.8 974,162 + -1.8 974,162 + +0.3 974,162 + +0.1 974,162 + -1.2 974,162 + +0.1 974,162 + +0.8 974,162 + -1.9 974,163 - +1.2 974,163 - -2.2 974,163 - -2.5 974,163 - -0.4 974,163 - -1.2 974,163 - -0.3 974,163 - +0.5 974,163 - +1.4 974,170 + -0.1 974,170 + -1.9 974,170 + +1.7 974,170 + -0.9 974,171 - -0.9 974,331 + Psest_0898 0.28 -0.3 974,332 - Psest_0898 0.28 -0.9 974,332 - Psest_0898 0.28 -0.5 974,332 - Psest_0898 0.28 -0.8 974,332 - Psest_0898 0.28 -1.1 974,344 + Psest_0898 0.30 +1.1 974,344 + Psest_0898 0.30 -0.1 974,350 + Psest_0898 0.32 +0.7 974,351 - Psest_0898 0.32 -3.0 974,351 - Psest_0898 0.32 -0.1 974,351 - Psest_0898 0.32 -0.8 974,351 - Psest_0898 0.32 -0.1 974,351 - Psest_0898 0.32 -1.7 974,419 + Psest_0898 0.45 -0.1 974,419 + Psest_0898 0.45 +0.4 974,420 - Psest_0898 0.45 -2.0 974,420 - Psest_0898 0.45 -2.3 974,559 + Psest_0898 0.73 +0.7 974,559 + Psest_0898 0.73 -0.5 974,559 + Psest_0898 0.73 -0.0 974,559 + Psest_0898 0.73 -1.1 974,560 - Psest_0898 0.73 -0.3 974,560 - Psest_0898 0.73 +1.0 974,761 + -0.9 974,761 + +1.4 974,761 + -0.8 974,761 + -2.2 974,761 + -2.3 974,761 + -0.8 974,769 - -0.8 974,786 + -1.4 974,786 + -0.1 974,786 + -1.0 974,787 - -0.7 974,787 - +1.0 974,787 - -0.3 974,955 + -0.0 974,955 + +0.1 974,955 + -0.4 974,955 + -0.7 974,955 + -1.5 974,955 + -0.5 974,955 + -1.9 974,955 + -0.9 974,955 + -0.8 974,955 + +1.1 974,955 + +2.4 974,955 + +3.0 974,955 + +1.7 974,956 - -0.0 974,956 - -1.8 974,956 - -2.0 974,956 - -1.0 974,956 - -0.1 974,956 - +0.2 975,038 - -1.2 975,038 - +0.4 975,038 - +0.7 975,038 - +1.1 975,038 - +0.8 975,153 + Psest_0899 0.14 -0.5 975,153 + Psest_0899 0.14 +0.0 975,153 + Psest_0899 0.14 -0.1 975,153 + Psest_0899 0.14 -1.3 975,153 + Psest_0899 0.14 +0.3 975,153 + Psest_0899 0.14 +0.7 975,153 + Psest_0899 0.14 -1.2 975,153 + Psest_0899 0.14 -1.0 975,153 + Psest_0899 0.14 +1.1 975,153 + Psest_0899 0.14 -0.8 975,154 - Psest_0899 0.14 +3.7 975,154 - Psest_0899 0.14 -1.5 975,154 - Psest_0899 0.14 +0.5 975,154 - Psest_0899 0.14 -2.6 975,154 - Psest_0899 0.14 +0.3 975,154 - Psest_0899 0.14 +0.3 975,154 - Psest_0899 0.14 +0.3 975,196 - Psest_0899 0.16 -0.8 975,264 + Psest_0899 0.18 +0.9 975,264 + Psest_0899 0.18 -0.2 975,264 + Psest_0899 0.18 +0.1 975,265 - Psest_0899 0.18 +1.2 975,265 - Psest_0899 0.18 -1.3 975,265 - Psest_0899 0.18 -0.1 975,440 + Psest_0899 0.25 +1.1 975,440 + Psest_0899 0.25 +0.8 975,440 + Psest_0899 0.25 +1.1 975,440 + Psest_0899 0.25 -1.6 975,440 + Psest_0899 0.25 -1.1 975,441 - Psest_0899 0.25 +0.4 975,441 - Psest_0899 0.25 +2.4 975,441 - Psest_0899 0.25 +1.0 975,441 - Psest_0899 0.25 -0.1 975,474 + Psest_0899 0.26 -1.0 975,474 + Psest_0899 0.26 -0.8 975,534 + Psest_0899 0.29 -2.0 975,534 + Psest_0899 0.29 +0.3 975,534 + Psest_0899 0.29 -2.7 975,535 - Psest_0899 0.29 -0.1 975,535 - Psest_0899 0.29 -0.8 975,535 - Psest_0899 0.29 +1.2 975,535 - Psest_0899 0.29 +1.6 975,535 - Psest_0899 0.29 +0.0 975,564 + Psest_0899 0.30 -1.3 975,564 + Psest_0899 0.30 +0.1 975,565 - Psest_0899 0.30 -0.3 975,565 - Psest_0899 0.30 -0.8 975,890 + Psest_0899 0.42 +1.0 975,976 + Psest_0899 0.45 -0.2 975,976 + Psest_0899 0.45 +0.5 975,977 - Psest_0899 0.45 -0.1 975,988 - Psest_0899 0.46 +1.0 976,060 + Psest_0899 0.48 -0.6 976,060 + Psest_0899 0.48 -0.8 976,060 + Psest_0899 0.48 +0.7 976,060 + Psest_0899 0.48 -0.3 976,060 + Psest_0899 0.48 -1.0 976,086 + Psest_0899 0.49 +0.1 976,086 + Psest_0899 0.49 -1.3 976,086 + Psest_0899 0.49 +0.1 976,086 + Psest_0899 0.49 -1.8 976,086 + Psest_0899 0.49 +1.3 976,086 + Psest_0899 0.49 +0.2 976,086 + Psest_0899 0.49 -0.5 976,086 + Psest_0899 0.49 -1.6 976,087 - Psest_0899 0.49 +0.3 976,087 - Psest_0899 0.49 +1.2 976,087 - Psest_0899 0.49 +3.4 976,087 - Psest_0899 0.49 -0.1 976,087 - Psest_0899 0.49 +1.8 976,087 - Psest_0899 0.49 -0.1 976,087 - Psest_0899 0.49 -2.6 976,090 + Psest_0899 0.50 +0.7 976,090 + Psest_0899 0.50 -1.2 976,090 + Psest_0899 0.50 +4.1 976,091 - Psest_0899 0.50 +0.6 976,091 - Psest_0899 0.50 +0.9 976,091 - Psest_0899 0.50 -2.3 976,091 - Psest_0899 0.50 +0.5 976,091 - Psest_0899 0.50 +0.0 976,091 - Psest_0899 0.50 +0.6 976,091 - Psest_0899 0.50 +0.4 976,091 - Psest_0899 0.50 -1.8 976,140 + Psest_0899 0.51 +1.5 976,140 + Psest_0899 0.51 -1.1 976,141 - Psest_0899 0.52 -0.5 976,141 - Psest_0899 0.52 -0.7 976,141 - Psest_0899 0.52 +0.1 976,141 - Psest_0899 0.52 +0.4 976,141 - Psest_0899 0.52 -0.6 976,141 - Psest_0899 0.52 +0.4 976,320 - Psest_0899 0.58 +1.0 976,636 + Psest_0899 0.70 -1.5 976,701 + Psest_0899 0.73 -1.1 976,701 + Psest_0899 0.73 -0.9 976,701 + Psest_0899 0.73 -0.2 976,701 + Psest_0899 0.73 +1.7 976,701 + Psest_0899 0.73 -1.3 976,701 + Psest_0899 0.73 -2.9 976,701 + Psest_0899 0.73 -2.4 976,701 + Psest_0899 0.73 +0.4 976,701 + Psest_0899 0.73 +1.1 976,701 + Psest_0899 0.73 -2.1 976,701 + Psest_0899 0.73 -1.4 976,701 + Psest_0899 0.73 -1.9 976,702 - Psest_0899 0.73 -0.5 976,702 - Psest_0899 0.73 +1.5 976,702 - Psest_0899 0.73 +0.1 976,702 - Psest_0899 0.73 +0.9 976,702 - Psest_0899 0.73 +0.3 976,702 - Psest_0899 0.73 +1.7 976,768 - Psest_0899 0.75 +0.5 976,870 - Psest_0899 0.79 +0.3 977,049 + Psest_0899 0.86 -0.9 977,151 + Psest_0899 0.90 +0.7 977,151 + Psest_0899 0.90 +0.9 977,151 + Psest_0899 0.90 +3.1 977,151 + Psest_0899 0.90 -0.6 977,152 - Psest_0899 0.90 -0.4 977,152 - Psest_0899 0.90 -1.8 977,152 - Psest_0899 0.90 -0.1 977,152 - Psest_0899 0.90 -0.6 977,245 + +0.3 977,424 + -2.0 977,424 + +0.4 977,429 + +1.2 977,429 + -2.0 977,429 + -1.0 977,429 + +1.3 977,429 + -0.5 977,430 - -1.9 977,430 - +1.7 977,430 - -1.9 977,430 - -0.3 977,430 - -1.0 977,430 - +3.3 977,430 - -0.5 977,430 - +0.1 977,430 - -0.6 977,430 - +1.7 977,430 - +0.6 977,430 - -2.1 977,430 - -1.0 977,531 + -1.6 977,531 + +0.4 977,532 - -1.0 977,549 - +1.4 977,560 + +0.6 977,560 + -1.0 977,561 - +0.8 977,561 - -2.2 977,665 + -0.8 977,665 + +0.7 977,665 + -1.2 977,665 + -0.5 977,665 + -1.1 977,666 - +0.6 977,666 - -2.3 977,666 - -2.0 977,752 + -1.0 977,752 + +0.7 977,753 - -1.8 977,753 - -2.1 977,808 - -1.1 977,808 - +0.8 977,936 + +0.0 977,937 - -2.1 977,937 - -1.1
Or see this region's nucleotide sequence