Experiment: Chlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0837 and Psest_0838 are separated by 180 nucleotides Psest_0838 and Psest_0839 are separated by 96 nucleotides Psest_0839 and Psest_0840 are separated by 231 nucleotides
Psest_0837: Psest_0837 - Putative lipid carrier protein, at 908,171 to 908,665
_0837
Psest_0838: Psest_0838 - Uncharacterized conserved protein, at 908,846 to 909,232
_0838
Psest_0839: Psest_0839 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 909,329 to 910,006
_0839
Psest_0840: Psest_0840 - anaerobic ribonucleoside-triphosphate reductase, at 910,238 to 912,256
_0840
Position (kb) 909
910
911 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.842 kb on + strand at 908.842 kb on + strand at 908.842 kb on + strand at 908.842 kb on + strand at 908.842 kb on + strand at 908.842 kb on + strand at 908.843 kb on - strand at 908.843 kb on - strand at 908.843 kb on - strand at 908.843 kb on - strand at 908.843 kb on - strand at 908.843 kb on - strand at 908.843 kb on - strand at 909.202 kb on - strand at 909.721 kb on - strand, within Psest_0839 at 909.846 kb on + strand, within Psest_0839 at 909.846 kb on + strand, within Psest_0839 at 909.847 kb on - strand, within Psest_0839 at 909.847 kb on - strand, within Psest_0839 at 909.847 kb on - strand, within Psest_0839 at 909.847 kb on - strand, within Psest_0839 at 909.847 kb on - strand, within Psest_0839 at 909.847 kb on - strand, within Psest_0839 at 909.919 kb on + strand, within Psest_0839 at 909.919 kb on + strand, within Psest_0839 at 909.919 kb on + strand, within Psest_0839 at 909.919 kb on + strand, within Psest_0839 at 909.919 kb on + strand, within Psest_0839 at 909.919 kb on + strand, within Psest_0839 at 909.920 kb on - strand, within Psest_0839 at 909.920 kb on - strand, within Psest_0839 at 910.035 kb on + strand at 910.050 kb on + strand at 910.051 kb on - strand at 910.051 kb on - strand at 910.188 kb on + strand at 910.189 kb on - strand at 910.189 kb on - strand at 910.215 kb on + strand at 910.215 kb on + strand at 910.215 kb on + strand at 910.215 kb on + strand at 910.216 kb on - strand at 910.219 kb on + strand at 910.219 kb on + strand at 910.219 kb on + strand at 910.219 kb on + strand at 910.220 kb on - strand at 910.502 kb on + strand, within Psest_0840 at 910.502 kb on + strand, within Psest_0840 at 910.503 kb on - strand, within Psest_0840 at 910.503 kb on - strand, within Psest_0840 at 910.503 kb on - strand, within Psest_0840 at 910.503 kb on - strand, within Psest_0840 at 910.573 kb on + strand, within Psest_0840 at 910.573 kb on + strand, within Psest_0840 at 910.574 kb on - strand, within Psest_0840 at 910.584 kb on - strand, within Psest_0840 at 910.584 kb on - strand, within Psest_0840 at 910.584 kb on - strand, within Psest_0840 at 910.673 kb on - strand, within Psest_0840 at 910.673 kb on - strand, within Psest_0840 at 910.682 kb on + strand, within Psest_0840 at 910.682 kb on + strand, within Psest_0840 at 910.682 kb on + strand, within Psest_0840 at 910.682 kb on + strand, within Psest_0840 at 910.682 kb on + strand, within Psest_0840 at 910.683 kb on - strand, within Psest_0840 at 910.683 kb on - strand, within Psest_0840 at 910.700 kb on + strand, within Psest_0840 at 910.701 kb on - strand, within Psest_0840 at 910.744 kb on + strand, within Psest_0840 at 910.946 kb on - strand, within Psest_0840 at 910.949 kb on + strand, within Psest_0840 at 910.949 kb on + strand, within Psest_0840 at 910.949 kb on + strand, within Psest_0840 at 910.949 kb on + strand, within Psest_0840 at 910.949 kb on + strand, within Psest_0840 at 910.950 kb on - strand, within Psest_0840 at 910.950 kb on - strand, within Psest_0840 at 910.950 kb on - strand, within Psest_0840 at 910.950 kb on - strand, within Psest_0840
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 75 mM remove 908,764 + +0.3 908,764 + +0.5 908,764 + +1.4 908,764 + +2.5 908,764 + +1.1 908,764 + -1.9 908,764 + +3.3 908,764 + +0.6 908,765 - -2.3 908,765 - -0.8 908,765 - -0.7 908,765 - +0.1 908,765 - -1.9 908,765 - +1.3 908,765 - -0.1 908,765 - -2.0 908,765 - +1.6 908,765 - -1.4 908,842 + -1.2 908,842 + -0.9 908,842 + -0.7 908,842 + +2.1 908,842 + -0.7 908,842 + -0.9 908,843 - +2.6 908,843 - +0.3 908,843 - +1.9 908,843 - -0.0 908,843 - -0.4 908,843 - -1.1 908,843 - +2.1 909,202 - +0.9 909,721 - Psest_0839 0.58 +1.1 909,846 + Psest_0839 0.76 +0.5 909,846 + Psest_0839 0.76 +0.2 909,847 - Psest_0839 0.76 +1.0 909,847 - Psest_0839 0.76 +0.1 909,847 - Psest_0839 0.76 +2.3 909,847 - Psest_0839 0.76 -0.7 909,847 - Psest_0839 0.76 +4.0 909,847 - Psest_0839 0.76 -3.0 909,919 + Psest_0839 0.87 +2.6 909,919 + Psest_0839 0.87 +1.6 909,919 + Psest_0839 0.87 -2.4 909,919 + Psest_0839 0.87 -1.9 909,919 + Psest_0839 0.87 +1.6 909,919 + Psest_0839 0.87 +2.2 909,920 - Psest_0839 0.87 +0.6 909,920 - Psest_0839 0.87 +2.1 910,035 + +0.6 910,050 + +3.1 910,051 - -1.4 910,051 - +1.9 910,188 + +1.6 910,189 - +1.3 910,189 - +0.6 910,215 + +3.4 910,215 + +0.3 910,215 + +1.1 910,215 + +0.1 910,216 - -1.6 910,219 + +2.1 910,219 + -0.8 910,219 + +1.6 910,219 + +0.8 910,220 - +0.9 910,502 + Psest_0840 0.13 +2.1 910,502 + Psest_0840 0.13 +0.2 910,503 - Psest_0840 0.13 +1.7 910,503 - Psest_0840 0.13 -0.9 910,503 - Psest_0840 0.13 +0.9 910,503 - Psest_0840 0.13 +0.2 910,573 + Psest_0840 0.17 +1.1 910,573 + Psest_0840 0.17 +1.3 910,574 - Psest_0840 0.17 -0.5 910,584 - Psest_0840 0.17 +1.1 910,584 - Psest_0840 0.17 +1.2 910,584 - Psest_0840 0.17 -1.0 910,673 - Psest_0840 0.22 +0.7 910,673 - Psest_0840 0.22 -0.7 910,682 + Psest_0840 0.22 -0.5 910,682 + Psest_0840 0.22 +2.8 910,682 + Psest_0840 0.22 -2.3 910,682 + Psest_0840 0.22 -1.1 910,682 + Psest_0840 0.22 +4.5 910,683 - Psest_0840 0.22 +6.2 910,683 - Psest_0840 0.22 -1.7 910,700 + Psest_0840 0.23 +1.9 910,701 - Psest_0840 0.23 -0.1 910,744 + Psest_0840 0.25 +0.1 910,946 - Psest_0840 0.35 +0.7 910,949 + Psest_0840 0.35 -2.2 910,949 + Psest_0840 0.35 +3.1 910,949 + Psest_0840 0.35 +1.5 910,949 + Psest_0840 0.35 +0.3 910,949 + Psest_0840 0.35 +0.2 910,950 - Psest_0840 0.35 +1.7 910,950 - Psest_0840 0.35 -0.8 910,950 - Psest_0840 0.35 -1.3 910,950 - Psest_0840 0.35 +0.3
Or see this region's nucleotide sequence