Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08350 and PGA1_c08360 are separated by 135 nucleotides PGA1_c08360 and PGA1_c08370 are separated by 86 nucleotides PGA1_c08370 and PGA1_c08380 are separated by 176 nucleotides
PGA1_c08350: PGA1_c08350 - putative MFS-type transporter, at 865,079 to 866,302
_c08350
PGA1_c08360: PGA1_c08360 - Rhodanese-related sulfurtransferase, at 866,438 to 866,839
_c08360
PGA1_c08370: PGA1_c08370 - Rhodanese-related sulfurtransferase, at 866,926 to 867,327
_c08370
PGA1_c08380: PGA1_c08380 - protein Tas, at 867,504 to 868,547
_c08380
Position (kb) 866
867
868 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 865.933 kb on - strand, within PGA1_c08350 at 865.968 kb on + strand, within PGA1_c08350 at 865.968 kb on + strand, within PGA1_c08350 at 865.976 kb on - strand, within PGA1_c08350 at 865.976 kb on - strand, within PGA1_c08350 at 865.976 kb on - strand, within PGA1_c08350 at 865.976 kb on - strand, within PGA1_c08350 at 865.976 kb on - strand, within PGA1_c08350 at 865.976 kb on - strand, within PGA1_c08350 at 865.976 kb on - strand, within PGA1_c08350 at 866.013 kb on + strand, within PGA1_c08350 at 866.013 kb on + strand, within PGA1_c08350 at 866.013 kb on + strand, within PGA1_c08350 at 866.013 kb on + strand, within PGA1_c08350 at 866.021 kb on - strand, within PGA1_c08350 at 866.021 kb on - strand, within PGA1_c08350 at 866.038 kb on + strand, within PGA1_c08350 at 866.038 kb on + strand, within PGA1_c08350 at 866.038 kb on + strand, within PGA1_c08350 at 866.046 kb on - strand, within PGA1_c08350 at 866.046 kb on - strand, within PGA1_c08350 at 866.076 kb on - strand, within PGA1_c08350 at 866.076 kb on - strand, within PGA1_c08350 at 866.101 kb on - strand, within PGA1_c08350 at 866.122 kb on + strand, within PGA1_c08350 at 866.200 kb on + strand at 866.200 kb on + strand at 866.227 kb on + strand at 866.227 kb on + strand at 866.241 kb on + strand at 866.311 kb on + strand at 866.319 kb on - strand at 866.319 kb on - strand at 866.319 kb on - strand at 866.339 kb on - strand at 866.429 kb on - strand at 866.477 kb on - strand at 866.490 kb on - strand, within PGA1_c08360 at 866.586 kb on + strand, within PGA1_c08360 at 866.586 kb on + strand, within PGA1_c08360 at 866.593 kb on - strand, within PGA1_c08360 at 866.594 kb on - strand, within PGA1_c08360 at 866.600 kb on + strand, within PGA1_c08360 at 866.685 kb on + strand, within PGA1_c08360 at 866.735 kb on - strand, within PGA1_c08360 at 866.760 kb on - strand, within PGA1_c08360 at 866.771 kb on + strand, within PGA1_c08360 at 866.795 kb on - strand, within PGA1_c08360 at 866.799 kb on + strand at 866.804 kb on - strand at 866.848 kb on + strand at 866.855 kb on + strand at 866.958 kb on - strand at 867.001 kb on + strand, within PGA1_c08370 at 867.016 kb on - strand, within PGA1_c08370 at 867.104 kb on - strand, within PGA1_c08370 at 867.107 kb on + strand, within PGA1_c08370 at 867.115 kb on - strand, within PGA1_c08370 at 867.130 kb on - strand, within PGA1_c08370 at 867.132 kb on + strand, within PGA1_c08370 at 867.132 kb on + strand, within PGA1_c08370 at 867.132 kb on + strand, within PGA1_c08370 at 867.132 kb on + strand, within PGA1_c08370 at 867.151 kb on + strand, within PGA1_c08370 at 867.159 kb on - strand, within PGA1_c08370 at 867.178 kb on + strand, within PGA1_c08370 at 867.235 kb on - strand, within PGA1_c08370 at 867.237 kb on + strand, within PGA1_c08370 at 867.274 kb on + strand, within PGA1_c08370 at 867.377 kb on - strand at 867.391 kb on - strand at 867.398 kb on - strand at 867.398 kb on - strand at 867.425 kb on + strand at 867.425 kb on + strand at 867.433 kb on - strand at 867.540 kb on - strand at 867.551 kb on - strand at 867.631 kb on - strand, within PGA1_c08380 at 867.659 kb on + strand, within PGA1_c08380 at 867.659 kb on - strand, within PGA1_c08380 at 867.669 kb on + strand, within PGA1_c08380 at 867.679 kb on + strand, within PGA1_c08380 at 867.698 kb on - strand, within PGA1_c08380 at 867.706 kb on - strand, within PGA1_c08380 at 867.726 kb on + strand, within PGA1_c08380 at 867.747 kb on + strand, within PGA1_c08380 at 867.755 kb on - strand, within PGA1_c08380 at 867.780 kb on + strand, within PGA1_c08380 at 867.789 kb on - strand, within PGA1_c08380 at 867.792 kb on + strand, within PGA1_c08380 at 867.819 kb on + strand, within PGA1_c08380 at 867.824 kb on - strand, within PGA1_c08380 at 867.895 kb on + strand, within PGA1_c08380 at 867.910 kb on + strand, within PGA1_c08380 at 867.910 kb on + strand, within PGA1_c08380 at 867.910 kb on + strand, within PGA1_c08380 at 867.910 kb on + strand, within PGA1_c08380 at 867.910 kb on + strand, within PGA1_c08380 at 867.948 kb on + strand, within PGA1_c08380 at 867.988 kb on + strand, within PGA1_c08380 at 868.011 kb on - strand, within PGA1_c08380 at 868.033 kb on + strand, within PGA1_c08380 at 868.033 kb on + strand, within PGA1_c08380 at 868.033 kb on + strand, within PGA1_c08380 at 868.041 kb on - strand, within PGA1_c08380 at 868.057 kb on + strand, within PGA1_c08380 at 868.164 kb on - strand, within PGA1_c08380 at 868.170 kb on + strand, within PGA1_c08380 at 868.170 kb on + strand, within PGA1_c08380 at 868.171 kb on + strand, within PGA1_c08380 at 868.181 kb on + strand, within PGA1_c08380 at 868.188 kb on + strand, within PGA1_c08380 at 868.224 kb on + strand, within PGA1_c08380 at 868.242 kb on + strand, within PGA1_c08380 at 868.259 kb on + strand, within PGA1_c08380 at 868.259 kb on + strand, within PGA1_c08380 at 868.267 kb on - strand, within PGA1_c08380 at 868.267 kb on - strand, within PGA1_c08380 at 868.267 kb on - strand, within PGA1_c08380 at 868.267 kb on - strand, within PGA1_c08380 at 868.267 kb on - strand, within PGA1_c08380 at 868.279 kb on + strand, within PGA1_c08380 at 868.285 kb on + strand, within PGA1_c08380 at 868.316 kb on + strand, within PGA1_c08380 at 868.316 kb on + strand, within PGA1_c08380 at 868.324 kb on - strand, within PGA1_c08380
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 865,933 - PGA1_c08350 0.70 +0.6 865,968 + PGA1_c08350 0.73 +0.2 865,968 + PGA1_c08350 0.73 -0.1 865,976 - PGA1_c08350 0.73 +1.2 865,976 - PGA1_c08350 0.73 +0.3 865,976 - PGA1_c08350 0.73 -0.2 865,976 - PGA1_c08350 0.73 +0.8 865,976 - PGA1_c08350 0.73 +1.0 865,976 - PGA1_c08350 0.73 +1.8 865,976 - PGA1_c08350 0.73 +0.5 866,013 + PGA1_c08350 0.76 -0.4 866,013 + PGA1_c08350 0.76 -2.0 866,013 + PGA1_c08350 0.76 -0.5 866,013 + PGA1_c08350 0.76 +0.1 866,021 - PGA1_c08350 0.77 -0.0 866,021 - PGA1_c08350 0.77 -1.8 866,038 + PGA1_c08350 0.78 +0.8 866,038 + PGA1_c08350 0.78 -2.8 866,038 + PGA1_c08350 0.78 +0.3 866,046 - PGA1_c08350 0.79 +0.4 866,046 - PGA1_c08350 0.79 -2.3 866,076 - PGA1_c08350 0.81 -0.1 866,076 - PGA1_c08350 0.81 +1.4 866,101 - PGA1_c08350 0.83 -0.2 866,122 + PGA1_c08350 0.85 +0.5 866,200 + +0.0 866,200 + -2.2 866,227 + -1.1 866,227 + +0.5 866,241 + -2.9 866,311 + -1.2 866,319 - +2.1 866,319 - +0.8 866,319 - +0.9 866,339 - -0.4 866,429 - -0.2 866,477 - +0.6 866,490 - PGA1_c08360 0.13 +1.9 866,586 + PGA1_c08360 0.37 +1.2 866,586 + PGA1_c08360 0.37 -0.8 866,593 - PGA1_c08360 0.39 +2.8 866,594 - PGA1_c08360 0.39 -0.4 866,600 + PGA1_c08360 0.40 +0.3 866,685 + PGA1_c08360 0.61 +2.2 866,735 - PGA1_c08360 0.74 -1.1 866,760 - PGA1_c08360 0.80 +2.2 866,771 + PGA1_c08360 0.83 +1.0 866,795 - PGA1_c08360 0.89 +0.2 866,799 + +2.3 866,804 - +0.1 866,848 + -0.3 866,855 + +0.4 866,958 - -1.2 867,001 + PGA1_c08370 0.19 +0.4 867,016 - PGA1_c08370 0.22 -1.2 867,104 - PGA1_c08370 0.44 -1.1 867,107 + PGA1_c08370 0.45 +0.2 867,115 - PGA1_c08370 0.47 +2.2 867,130 - PGA1_c08370 0.51 +0.8 867,132 + PGA1_c08370 0.51 +0.4 867,132 + PGA1_c08370 0.51 +0.6 867,132 + PGA1_c08370 0.51 +0.9 867,132 + PGA1_c08370 0.51 -0.2 867,151 + PGA1_c08370 0.56 -2.5 867,159 - PGA1_c08370 0.58 -0.6 867,178 + PGA1_c08370 0.63 +2.5 867,235 - PGA1_c08370 0.77 -1.6 867,237 + PGA1_c08370 0.77 +1.8 867,274 + PGA1_c08370 0.87 +1.4 867,377 - +2.2 867,391 - +0.8 867,398 - +0.6 867,398 - -0.8 867,425 + -1.8 867,425 + -1.6 867,433 - -0.1 867,540 - -0.7 867,551 - +1.0 867,631 - PGA1_c08380 0.12 -1.2 867,659 + PGA1_c08380 0.15 -0.8 867,659 - PGA1_c08380 0.15 +0.2 867,669 + PGA1_c08380 0.16 +1.2 867,679 + PGA1_c08380 0.17 -1.8 867,698 - PGA1_c08380 0.19 +0.3 867,706 - PGA1_c08380 0.19 -1.2 867,726 + PGA1_c08380 0.21 +0.5 867,747 + PGA1_c08380 0.23 -1.3 867,755 - PGA1_c08380 0.24 +0.2 867,780 + PGA1_c08380 0.26 -0.6 867,789 - PGA1_c08380 0.27 +1.2 867,792 + PGA1_c08380 0.28 -0.2 867,819 + PGA1_c08380 0.30 -0.8 867,824 - PGA1_c08380 0.31 +0.4 867,895 + PGA1_c08380 0.37 -0.8 867,910 + PGA1_c08380 0.39 -1.6 867,910 + PGA1_c08380 0.39 +0.3 867,910 + PGA1_c08380 0.39 +0.3 867,910 + PGA1_c08380 0.39 -1.4 867,910 + PGA1_c08380 0.39 -0.1 867,948 + PGA1_c08380 0.43 +0.3 867,988 + PGA1_c08380 0.46 +0.2 868,011 - PGA1_c08380 0.49 +0.5 868,033 + PGA1_c08380 0.51 -1.4 868,033 + PGA1_c08380 0.51 -2.2 868,033 + PGA1_c08380 0.51 -0.3 868,041 - PGA1_c08380 0.51 -1.2 868,057 + PGA1_c08380 0.53 +1.2 868,164 - PGA1_c08380 0.63 +1.0 868,170 + PGA1_c08380 0.64 -0.1 868,170 + PGA1_c08380 0.64 +0.2 868,171 + PGA1_c08380 0.64 -0.8 868,181 + PGA1_c08380 0.65 -0.8 868,188 + PGA1_c08380 0.66 +1.5 868,224 + PGA1_c08380 0.69 -1.7 868,242 + PGA1_c08380 0.71 +0.0 868,259 + PGA1_c08380 0.72 +1.2 868,259 + PGA1_c08380 0.72 +1.7 868,267 - PGA1_c08380 0.73 +1.5 868,267 - PGA1_c08380 0.73 -0.8 868,267 - PGA1_c08380 0.73 +0.6 868,267 - PGA1_c08380 0.73 +1.2 868,267 - PGA1_c08380 0.73 -1.2 868,279 + PGA1_c08380 0.74 +0.9 868,285 + PGA1_c08380 0.75 -0.7 868,316 + PGA1_c08380 0.78 -0.6 868,316 + PGA1_c08380 0.78 -0.2 868,324 - PGA1_c08380 0.79 -0.8
Or see this region's nucleotide sequence