Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08340 and PGA1_c08350 are separated by 105 nucleotides PGA1_c08350 and PGA1_c08360 are separated by 135 nucleotides PGA1_c08360 and PGA1_c08370 are separated by 86 nucleotides
PGA1_c08340: PGA1_c08340 - methionyl-tRNA synthetase MetG, at 863,246 to 864,973
_c08340
PGA1_c08350: PGA1_c08350 - putative MFS-type transporter, at 865,079 to 866,302
_c08350
PGA1_c08360: PGA1_c08360 - Rhodanese-related sulfurtransferase, at 866,438 to 866,839
_c08360
PGA1_c08370: PGA1_c08370 - Rhodanese-related sulfurtransferase, at 866,926 to 867,327
_c08370
Position (kb) 865
866
867 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 865.056 kb on + strand at 865.135 kb on + strand at 865.165 kb on - strand at 865.165 kb on - strand at 865.202 kb on + strand, within PGA1_c08350 at 865.207 kb on + strand, within PGA1_c08350 at 865.305 kb on - strand, within PGA1_c08350 at 865.345 kb on + strand, within PGA1_c08350 at 865.345 kb on + strand, within PGA1_c08350 at 865.345 kb on + strand, within PGA1_c08350 at 865.391 kb on + strand, within PGA1_c08350 at 865.427 kb on + strand, within PGA1_c08350 at 865.435 kb on - strand, within PGA1_c08350 at 865.478 kb on + strand, within PGA1_c08350 at 865.478 kb on + strand, within PGA1_c08350 at 865.484 kb on - strand, within PGA1_c08350 at 865.487 kb on + strand, within PGA1_c08350 at 865.673 kb on - strand, within PGA1_c08350 at 865.705 kb on - strand, within PGA1_c08350 at 865.762 kb on + strand, within PGA1_c08350 at 865.773 kb on + strand, within PGA1_c08350 at 865.902 kb on - strand, within PGA1_c08350 at 865.920 kb on - strand, within PGA1_c08350 at 865.933 kb on - strand, within PGA1_c08350 at 865.968 kb on + strand, within PGA1_c08350 at 865.968 kb on + strand, within PGA1_c08350 at 865.976 kb on - strand, within PGA1_c08350 at 865.976 kb on - strand, within PGA1_c08350 at 865.976 kb on - strand, within PGA1_c08350 at 865.976 kb on - strand, within PGA1_c08350 at 865.976 kb on - strand, within PGA1_c08350 at 865.976 kb on - strand, within PGA1_c08350 at 865.976 kb on - strand, within PGA1_c08350 at 866.013 kb on + strand, within PGA1_c08350 at 866.013 kb on + strand, within PGA1_c08350 at 866.013 kb on + strand, within PGA1_c08350 at 866.013 kb on + strand, within PGA1_c08350 at 866.021 kb on - strand, within PGA1_c08350 at 866.021 kb on - strand, within PGA1_c08350 at 866.038 kb on + strand, within PGA1_c08350 at 866.038 kb on + strand, within PGA1_c08350 at 866.038 kb on + strand, within PGA1_c08350 at 866.046 kb on - strand, within PGA1_c08350 at 866.046 kb on - strand, within PGA1_c08350 at 866.076 kb on - strand, within PGA1_c08350 at 866.076 kb on - strand, within PGA1_c08350 at 866.101 kb on - strand, within PGA1_c08350 at 866.122 kb on + strand, within PGA1_c08350 at 866.200 kb on + strand at 866.200 kb on + strand at 866.227 kb on + strand at 866.227 kb on + strand at 866.241 kb on + strand at 866.311 kb on + strand at 866.319 kb on - strand at 866.319 kb on - strand at 866.319 kb on - strand at 866.339 kb on - strand at 866.429 kb on - strand at 866.477 kb on - strand at 866.490 kb on - strand, within PGA1_c08360 at 866.586 kb on + strand, within PGA1_c08360 at 866.586 kb on + strand, within PGA1_c08360 at 866.593 kb on - strand, within PGA1_c08360 at 866.594 kb on - strand, within PGA1_c08360 at 866.600 kb on + strand, within PGA1_c08360 at 866.685 kb on + strand, within PGA1_c08360 at 866.735 kb on - strand, within PGA1_c08360 at 866.760 kb on - strand, within PGA1_c08360 at 866.771 kb on + strand, within PGA1_c08360 at 866.795 kb on - strand, within PGA1_c08360 at 866.799 kb on + strand at 866.804 kb on - strand at 866.848 kb on + strand at 866.855 kb on + strand at 866.958 kb on - strand at 867.001 kb on + strand, within PGA1_c08370 at 867.016 kb on - strand, within PGA1_c08370 at 867.104 kb on - strand, within PGA1_c08370 at 867.107 kb on + strand, within PGA1_c08370 at 867.115 kb on - strand, within PGA1_c08370 at 867.130 kb on - strand, within PGA1_c08370 at 867.132 kb on + strand, within PGA1_c08370 at 867.132 kb on + strand, within PGA1_c08370 at 867.132 kb on + strand, within PGA1_c08370 at 867.132 kb on + strand, within PGA1_c08370 at 867.151 kb on + strand, within PGA1_c08370 at 867.159 kb on - strand, within PGA1_c08370 at 867.178 kb on + strand, within PGA1_c08370 at 867.235 kb on - strand, within PGA1_c08370 at 867.237 kb on + strand, within PGA1_c08370 at 867.274 kb on + strand, within PGA1_c08370
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 865,056 + +0.2 865,135 + -1.8 865,165 - +1.2 865,165 - -1.2 865,202 + PGA1_c08350 0.10 -0.8 865,207 + PGA1_c08350 0.10 +0.8 865,305 - PGA1_c08350 0.18 +1.2 865,345 + PGA1_c08350 0.22 -0.1 865,345 + PGA1_c08350 0.22 +0.8 865,345 + PGA1_c08350 0.22 +0.6 865,391 + PGA1_c08350 0.25 -0.3 865,427 + PGA1_c08350 0.28 -1.2 865,435 - PGA1_c08350 0.29 -0.2 865,478 + PGA1_c08350 0.33 +1.6 865,478 + PGA1_c08350 0.33 +1.8 865,484 - PGA1_c08350 0.33 -0.3 865,487 + PGA1_c08350 0.33 -0.3 865,673 - PGA1_c08350 0.49 +1.2 865,705 - PGA1_c08350 0.51 -0.6 865,762 + PGA1_c08350 0.56 +0.2 865,773 + PGA1_c08350 0.57 +0.3 865,902 - PGA1_c08350 0.67 +2.4 865,920 - PGA1_c08350 0.69 -1.4 865,933 - PGA1_c08350 0.70 +0.6 865,968 + PGA1_c08350 0.73 +0.2 865,968 + PGA1_c08350 0.73 -0.1 865,976 - PGA1_c08350 0.73 +1.2 865,976 - PGA1_c08350 0.73 +0.3 865,976 - PGA1_c08350 0.73 -0.2 865,976 - PGA1_c08350 0.73 +0.8 865,976 - PGA1_c08350 0.73 +1.0 865,976 - PGA1_c08350 0.73 +1.8 865,976 - PGA1_c08350 0.73 +0.5 866,013 + PGA1_c08350 0.76 -0.4 866,013 + PGA1_c08350 0.76 -2.0 866,013 + PGA1_c08350 0.76 -0.5 866,013 + PGA1_c08350 0.76 +0.1 866,021 - PGA1_c08350 0.77 -0.0 866,021 - PGA1_c08350 0.77 -1.8 866,038 + PGA1_c08350 0.78 +0.8 866,038 + PGA1_c08350 0.78 -2.8 866,038 + PGA1_c08350 0.78 +0.3 866,046 - PGA1_c08350 0.79 +0.4 866,046 - PGA1_c08350 0.79 -2.3 866,076 - PGA1_c08350 0.81 -0.1 866,076 - PGA1_c08350 0.81 +1.4 866,101 - PGA1_c08350 0.83 -0.2 866,122 + PGA1_c08350 0.85 +0.5 866,200 + +0.0 866,200 + -2.2 866,227 + -1.1 866,227 + +0.5 866,241 + -2.9 866,311 + -1.2 866,319 - +2.1 866,319 - +0.8 866,319 - +0.9 866,339 - -0.4 866,429 - -0.2 866,477 - +0.6 866,490 - PGA1_c08360 0.13 +1.9 866,586 + PGA1_c08360 0.37 +1.2 866,586 + PGA1_c08360 0.37 -0.8 866,593 - PGA1_c08360 0.39 +2.8 866,594 - PGA1_c08360 0.39 -0.4 866,600 + PGA1_c08360 0.40 +0.3 866,685 + PGA1_c08360 0.61 +2.2 866,735 - PGA1_c08360 0.74 -1.1 866,760 - PGA1_c08360 0.80 +2.2 866,771 + PGA1_c08360 0.83 +1.0 866,795 - PGA1_c08360 0.89 +0.2 866,799 + +2.3 866,804 - +0.1 866,848 + -0.3 866,855 + +0.4 866,958 - -1.2 867,001 + PGA1_c08370 0.19 +0.4 867,016 - PGA1_c08370 0.22 -1.2 867,104 - PGA1_c08370 0.44 -1.1 867,107 + PGA1_c08370 0.45 +0.2 867,115 - PGA1_c08370 0.47 +2.2 867,130 - PGA1_c08370 0.51 +0.8 867,132 + PGA1_c08370 0.51 +0.4 867,132 + PGA1_c08370 0.51 +0.6 867,132 + PGA1_c08370 0.51 +0.9 867,132 + PGA1_c08370 0.51 -0.2 867,151 + PGA1_c08370 0.56 -2.5 867,159 - PGA1_c08370 0.58 -0.6 867,178 + PGA1_c08370 0.63 +2.5 867,235 - PGA1_c08370 0.77 -1.6 867,237 + PGA1_c08370 0.77 +1.8 867,274 + PGA1_c08370 0.87 +1.4
Or see this region's nucleotide sequence