Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08040 and PGA1_c08050 are separated by 75 nucleotides PGA1_c08050 and PGA1_c08060 are separated by 69 nucleotides PGA1_c08060 and PGA1_c08070 are separated by 432 nucleotides
PGA1_c08040: PGA1_c08040 - tRNA-Ser, at 834,204 to 834,293
_c08040
PGA1_c08050: PGA1_c08050 - putative precorrin-6A synthase (deacetylating), cobF, at 834,369 to 835,136
_c08050
PGA1_c08060: PGA1_c08060 - hypothetical protein, at 835,206 to 835,883
_c08060
PGA1_c08070: PGA1_c08070 - uroporphyrin-III C-methyltransferase CobA, at 836,316 to 837,080
_c08070
Position (kb) 835
836 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 834.317 kb on - strand at 835.228 kb on + strand at 835.270 kb on + strand at 835.275 kb on + strand, within PGA1_c08060 at 835.275 kb on + strand, within PGA1_c08060 at 835.275 kb on + strand, within PGA1_c08060 at 835.278 kb on - strand, within PGA1_c08060 at 835.283 kb on - strand, within PGA1_c08060 at 835.327 kb on - strand, within PGA1_c08060 at 835.429 kb on - strand, within PGA1_c08060 at 835.489 kb on - strand, within PGA1_c08060 at 835.536 kb on + strand, within PGA1_c08060 at 835.593 kb on - strand, within PGA1_c08060 at 835.732 kb on + strand, within PGA1_c08060 at 835.740 kb on - strand, within PGA1_c08060 at 835.740 kb on - strand, within PGA1_c08060 at 835.740 kb on - strand, within PGA1_c08060 at 835.759 kb on - strand, within PGA1_c08060 at 835.759 kb on - strand, within PGA1_c08060 at 835.784 kb on + strand, within PGA1_c08060 at 835.809 kb on + strand, within PGA1_c08060 at 835.831 kb on + strand at 835.839 kb on - strand at 835.846 kb on + strand at 835.905 kb on + strand at 836.077 kb on + strand at 836.109 kb on + strand at 836.131 kb on - strand at 836.177 kb on + strand at 836.276 kb on + strand at 836.276 kb on + strand at 836.276 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 834,317 - +0.0 835,228 + +1.2 835,270 + +1.5 835,275 + PGA1_c08060 0.10 -0.7 835,275 + PGA1_c08060 0.10 -0.2 835,275 + PGA1_c08060 0.10 -2.0 835,278 - PGA1_c08060 0.11 -0.4 835,283 - PGA1_c08060 0.11 -0.6 835,327 - PGA1_c08060 0.18 +0.2 835,429 - PGA1_c08060 0.33 +0.9 835,489 - PGA1_c08060 0.42 +0.3 835,536 + PGA1_c08060 0.49 -2.0 835,593 - PGA1_c08060 0.57 -0.5 835,732 + PGA1_c08060 0.78 +0.2 835,740 - PGA1_c08060 0.79 -1.8 835,740 - PGA1_c08060 0.79 -0.1 835,740 - PGA1_c08060 0.79 -0.6 835,759 - PGA1_c08060 0.82 -0.6 835,759 - PGA1_c08060 0.82 -1.0 835,784 + PGA1_c08060 0.85 -3.8 835,809 + PGA1_c08060 0.89 -0.8 835,831 + -0.4 835,839 - -2.5 835,846 + -1.1 835,905 + -3.6 836,077 + -0.2 836,109 + +0.3 836,131 - +0.4 836,177 + -0.8 836,276 + +0.4 836,276 + +0.2 836,276 + -0.7
Or see this region's nucleotide sequence