Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0658

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0657 and Psest_0658 overlap by 11 nucleotidesPsest_0658 and Psest_0659 are separated by 1 nucleotidesPsest_0659 and Psest_0660 are separated by 22 nucleotides Psest_0657: Psest_0657 - Chemotaxis protein histidine kinase and related kinases, at 714,123 to 716,369 _0657 Psest_0658: Psest_0658 - Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 716,359 to 716,700 _0658 Psest_0659: Psest_0659 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 716,702 to 717,067 _0659 Psest_0660: Psest_0660 - Methyl-accepting chemotaxis protein, at 717,090 to 718,175 _0660 Position (kb) 716 717Strain fitness (log2 ratio) -2 -1 0 1 2at 715.597 kb on + strand, within Psest_0657at 715.597 kb on + strand, within Psest_0657at 715.597 kb on + strand, within Psest_0657at 715.597 kb on + strand, within Psest_0657at 715.598 kb on - strand, within Psest_0657at 715.598 kb on - strand, within Psest_0657at 715.598 kb on - strand, within Psest_0657at 715.598 kb on - strand, within Psest_0657at 715.720 kb on + strand, within Psest_0657at 715.737 kb on + strand, within Psest_0657at 715.737 kb on + strand, within Psest_0657at 715.737 kb on + strand, within Psest_0657at 715.737 kb on + strand, within Psest_0657at 715.737 kb on + strand, within Psest_0657at 715.737 kb on + strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 716.287 kb on + strandat 716.287 kb on + strandat 716.288 kb on - strandat 716.288 kb on - strandat 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 717.171 kb on + strandat 717.171 kb on + strandat 717.171 kb on + strandat 717.427 kb on + strand, within Psest_0660at 717.630 kb on - strand, within Psest_0660at 717.630 kb on - strand, within Psest_0660

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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715,597 + Psest_0657 0.66 +0.3
715,597 + Psest_0657 0.66 +1.0
715,597 + Psest_0657 0.66 +1.0
715,597 + Psest_0657 0.66 +0.3
715,598 - Psest_0657 0.66 +0.3
715,598 - Psest_0657 0.66 -0.9
715,598 - Psest_0657 0.66 +0.3
715,598 - Psest_0657 0.66 +2.2
715,720 + Psest_0657 0.71 +0.5
715,737 + Psest_0657 0.72 +1.6
715,737 + Psest_0657 0.72 -1.1
715,737 + Psest_0657 0.72 -2.0
715,737 + Psest_0657 0.72 -0.2
715,737 + Psest_0657 0.72 +1.4
715,737 + Psest_0657 0.72 +0.3
715,738 - Psest_0657 0.72 +0.0
715,738 - Psest_0657 0.72 +0.3
715,738 - Psest_0657 0.72 -1.3
715,738 - Psest_0657 0.72 +0.0
715,738 - Psest_0657 0.72 +0.0
715,738 - Psest_0657 0.72 +2.6
715,738 - Psest_0657 0.72 -0.6
715,738 - Psest_0657 0.72 -0.6
715,738 - Psest_0657 0.72 +2.0
715,738 - Psest_0657 0.72 +0.0
715,738 - Psest_0657 0.72 -0.9
715,738 - Psest_0657 0.72 -0.4
715,738 - Psest_0657 0.72 +0.6
716,287 + -0.2
716,287 + +2.6
716,288 - -0.6
716,288 - +1.6
716,630 + Psest_0658 0.79 +0.6
716,630 + Psest_0658 0.79 +1.6
716,630 + Psest_0658 0.79 +0.0
716,630 + Psest_0658 0.79 -0.7
716,630 + Psest_0658 0.79 +1.0
716,630 + Psest_0658 0.79 +2.1
716,630 + Psest_0658 0.79 +0.6
716,630 + Psest_0658 0.79 +0.3
716,630 + Psest_0658 0.79 +1.8
716,630 + Psest_0658 0.79 +0.3
716,630 + Psest_0658 0.79 +2.6
716,630 + Psest_0658 0.79 +1.4
716,630 + Psest_0658 0.79 +2.6
716,630 + Psest_0658 0.79 +2.6
716,631 - Psest_0658 0.80 -2.4
716,631 - Psest_0658 0.80 -1.0
716,631 - Psest_0658 0.80 +1.1
716,631 - Psest_0658 0.80 +0.3
716,631 - Psest_0658 0.80 +0.3
716,631 - Psest_0658 0.80 -2.2
716,631 - Psest_0658 0.80 +2.0
716,631 - Psest_0658 0.80 -2.0
716,631 - Psest_0658 0.80 +1.6
716,631 - Psest_0658 0.80 +1.6
716,631 - Psest_0658 0.80 +2.6
716,631 - Psest_0658 0.80 -0.2
717,171 + +2.6
717,171 + -0.0
717,171 + +2.6
717,427 + Psest_0660 0.31 +0.6
717,630 - Psest_0660 0.50 +1.0
717,630 - Psest_0660 0.50 -2.0

Or see this region's nucleotide sequence