Experiment: Chlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4195 and Psest_4196 are separated by 3 nucleotides Psest_4196 and Psest_4197 overlap by 4 nucleotides Psest_4197 and Psest_4198 overlap by 4 nucleotides
Psest_4195: Psest_4195 - general secretion pathway protein L, at 4,373,801 to 4,374,934
_4195
Psest_4196: Psest_4196 - Type II secretory pathway, component PulK, at 4,374,938 to 4,375,927
_4196
Psest_4197: Psest_4197 - general secretion pathway protein J, at 4,375,924 to 4,376,637
_4197
Psest_4198: Psest_4198 - general secretion pathway protein I, at 4,376,634 to 4,377,053
_4198
Position (kb) 4374
4375
4376 Strain fitness (log2 ratio) -1
0
1
2
3 at 4373.964 kb on + strand, within Psest_4195 at 4373.964 kb on + strand, within Psest_4195 at 4373.965 kb on - strand, within Psest_4195 at 4373.965 kb on - strand, within Psest_4195 at 4373.965 kb on - strand, within Psest_4195 at 4374.178 kb on - strand, within Psest_4195 at 4374.178 kb on - strand, within Psest_4195 at 4374.178 kb on - strand, within Psest_4195 at 4374.329 kb on + strand, within Psest_4195 at 4374.330 kb on - strand, within Psest_4195 at 4374.330 kb on - strand, within Psest_4195 at 4374.330 kb on - strand, within Psest_4195 at 4374.512 kb on + strand, within Psest_4195 at 4374.512 kb on + strand, within Psest_4195 at 4374.512 kb on + strand, within Psest_4195 at 4374.512 kb on + strand, within Psest_4195 at 4374.513 kb on - strand, within Psest_4195 at 4374.873 kb on + strand at 4374.939 kb on + strand at 4374.939 kb on + strand at 4374.939 kb on + strand at 4374.939 kb on + strand at 4374.939 kb on + strand at 4375.126 kb on + strand, within Psest_4196 at 4375.305 kb on + strand, within Psest_4196 at 4375.306 kb on - strand, within Psest_4196 at 4375.549 kb on + strand, within Psest_4196 at 4375.549 kb on + strand, within Psest_4196 at 4376.028 kb on + strand, within Psest_4197 at 4376.029 kb on - strand, within Psest_4197 at 4376.247 kb on - strand, within Psest_4197 at 4376.434 kb on + strand, within Psest_4197 at 4376.435 kb on - strand, within Psest_4197 at 4376.435 kb on - strand, within Psest_4197 at 4376.546 kb on + strand, within Psest_4197 at 4376.547 kb on - strand, within Psest_4197
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 75 mM remove 4,373,964 + Psest_4195 0.14 +0.4 4,373,964 + Psest_4195 0.14 +1.8 4,373,965 - Psest_4195 0.14 +0.5 4,373,965 - Psest_4195 0.14 -1.1 4,373,965 - Psest_4195 0.14 -1.6 4,374,178 - Psest_4195 0.33 +0.8 4,374,178 - Psest_4195 0.33 +2.4 4,374,178 - Psest_4195 0.33 +0.1 4,374,329 + Psest_4195 0.47 +0.7 4,374,330 - Psest_4195 0.47 +1.0 4,374,330 - Psest_4195 0.47 +0.8 4,374,330 - Psest_4195 0.47 +2.3 4,374,512 + Psest_4195 0.63 +1.7 4,374,512 + Psest_4195 0.63 +2.4 4,374,512 + Psest_4195 0.63 +0.8 4,374,512 + Psest_4195 0.63 +1.2 4,374,513 - Psest_4195 0.63 +1.8 4,374,873 + +1.3 4,374,939 + -0.9 4,374,939 + +1.2 4,374,939 + +0.1 4,374,939 + -0.4 4,374,939 + -0.2 4,375,126 + Psest_4196 0.19 +0.8 4,375,305 + Psest_4196 0.37 -0.6 4,375,306 - Psest_4196 0.37 +2.0 4,375,549 + Psest_4196 0.62 +0.5 4,375,549 + Psest_4196 0.62 +1.8 4,376,028 + Psest_4197 0.15 +3.0 4,376,029 - Psest_4197 0.15 +0.4 4,376,247 - Psest_4197 0.45 +1.4 4,376,434 + Psest_4197 0.71 +1.4 4,376,435 - Psest_4197 0.72 +1.8 4,376,435 - Psest_4197 0.72 +0.4 4,376,546 + Psest_4197 0.87 -0.4 4,376,547 - Psest_4197 0.87 +2.4
Or see this region's nucleotide sequence