Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3857

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3856 and Psest_3857 are separated by 27 nucleotidesPsest_3857 and Psest_3858 are separated by 86 nucleotidesPsest_3858 and Psest_3859 are separated by 103 nucleotides Psest_3856: Psest_3856 - ABC-type branched-chain amino acid transport system, permease component, at 4,027,925 to 4,028,911 _3856 Psest_3857: Psest_3857 - ATPases involved in chromosome partitioning, at 4,028,939 to 4,029,712 _3857 Psest_3858: Psest_3858 - thymidylate synthase, at 4,029,799 to 4,030,593 _3858 Psest_3859: Psest_3859 - prolipoprotein diacylglyceryl transferase, at 4,030,697 to 4,031,497 _3859 Position (kb) 4028 4029 4030Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4028.030 kb on + strand, within Psest_3856at 4028.030 kb on + strand, within Psest_3856at 4028.031 kb on - strand, within Psest_3856at 4028.106 kb on - strand, within Psest_3856at 4028.156 kb on + strand, within Psest_3856at 4028.157 kb on - strand, within Psest_3856at 4028.283 kb on - strand, within Psest_3856at 4028.423 kb on + strand, within Psest_3856at 4028.423 kb on + strand, within Psest_3856at 4028.423 kb on + strand, within Psest_3856at 4028.423 kb on + strand, within Psest_3856at 4028.423 kb on + strand, within Psest_3856at 4028.423 kb on + strand, within Psest_3856at 4028.423 kb on + strand, within Psest_3856at 4028.423 kb on + strand, within Psest_3856at 4028.423 kb on + strand, within Psest_3856at 4028.423 kb on + strand, within Psest_3856at 4028.423 kb on + strand, within Psest_3856at 4028.423 kb on + strand, within Psest_3856at 4028.423 kb on + strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.424 kb on - strand, within Psest_3856at 4028.429 kb on + strand, within Psest_3856at 4028.429 kb on + strand, within Psest_3856at 4028.429 kb on + strand, within Psest_3856at 4028.429 kb on + strand, within Psest_3856at 4028.429 kb on + strand, within Psest_3856at 4028.429 kb on + strand, within Psest_3856at 4028.429 kb on + strand, within Psest_3856at 4028.429 kb on + strand, within Psest_3856at 4028.429 kb on + strand, within Psest_3856at 4028.429 kb on + strand, within Psest_3856at 4028.429 kb on + strand, within Psest_3856at 4028.429 kb on + strand, within Psest_3856at 4028.429 kb on + strand, within Psest_3856at 4028.429 kb on + strand, within Psest_3856at 4028.430 kb on - strand, within Psest_3856at 4028.430 kb on - strand, within Psest_3856at 4028.430 kb on - strand, within Psest_3856at 4028.430 kb on - strand, within Psest_3856at 4028.430 kb on - strand, within Psest_3856at 4028.430 kb on - strand, within Psest_3856at 4028.430 kb on - strand, within Psest_3856at 4028.430 kb on - strand, within Psest_3856at 4028.430 kb on - strand, within Psest_3856at 4028.439 kb on + strand, within Psest_3856at 4028.439 kb on + strand, within Psest_3856at 4028.439 kb on + strand, within Psest_3856at 4028.568 kb on - strand, within Psest_3856at 4028.768 kb on + strand, within Psest_3856at 4028.768 kb on + strand, within Psest_3856at 4028.768 kb on + strand, within Psest_3856at 4028.768 kb on + strand, within Psest_3856at 4028.769 kb on - strand, within Psest_3856at 4028.769 kb on - strand, within Psest_3856at 4028.769 kb on - strand, within Psest_3856at 4028.769 kb on - strand, within Psest_3856at 4028.864 kb on + strandat 4028.864 kb on + strandat 4028.864 kb on + strandat 4028.865 kb on - strandat 4028.865 kb on - strandat 4028.865 kb on - strandat 4028.865 kb on - strandat 4028.865 kb on - strandat 4028.865 kb on - strandat 4028.865 kb on - strandat 4029.010 kb on - strandat 4029.023 kb on - strand, within Psest_3857at 4029.023 kb on - strand, within Psest_3857at 4029.222 kb on + strand, within Psest_3857at 4029.222 kb on + strand, within Psest_3857at 4029.300 kb on + strand, within Psest_3857at 4029.301 kb on - strand, within Psest_3857at 4029.342 kb on + strand, within Psest_3857at 4029.342 kb on + strand, within Psest_3857at 4029.343 kb on - strand, within Psest_3857at 4029.343 kb on - strand, within Psest_3857at 4029.577 kb on - strand, within Psest_3857at 4029.748 kb on - strandat 4029.748 kb on - strandat 4030.643 kb on - strandat 4030.643 kb on - strandat 4030.643 kb on - strandat 4030.646 kb on - strandat 4030.646 kb on - strandat 4030.646 kb on - strandat 4030.646 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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4,028,030 + Psest_3856 0.11 +0.1
4,028,030 + Psest_3856 0.11 +1.8
4,028,031 - Psest_3856 0.11 -1.9
4,028,106 - Psest_3856 0.18 +1.4
4,028,156 + Psest_3856 0.23 +0.7
4,028,157 - Psest_3856 0.24 +0.4
4,028,283 - Psest_3856 0.36 -2.0
4,028,423 + Psest_3856 0.50 -2.7
4,028,423 + Psest_3856 0.50 +0.9
4,028,423 + Psest_3856 0.50 -0.6
4,028,423 + Psest_3856 0.50 -3.2
4,028,423 + Psest_3856 0.50 +0.0
4,028,423 + Psest_3856 0.50 -0.3
4,028,423 + Psest_3856 0.50 -1.1
4,028,423 + Psest_3856 0.50 -0.5
4,028,423 + Psest_3856 0.50 -1.6
4,028,423 + Psest_3856 0.50 +2.9
4,028,423 + Psest_3856 0.50 +0.4
4,028,423 + Psest_3856 0.50 +1.1
4,028,423 + Psest_3856 0.50 -1.9
4,028,424 - Psest_3856 0.51 -0.4
4,028,424 - Psest_3856 0.51 +1.9
4,028,424 - Psest_3856 0.51 +0.6
4,028,424 - Psest_3856 0.51 -1.1
4,028,424 - Psest_3856 0.51 -1.0
4,028,424 - Psest_3856 0.51 -1.6
4,028,424 - Psest_3856 0.51 -1.1
4,028,424 - Psest_3856 0.51 -0.4
4,028,424 - Psest_3856 0.51 -0.7
4,028,424 - Psest_3856 0.51 +0.8
4,028,424 - Psest_3856 0.51 -2.1
4,028,424 - Psest_3856 0.51 -2.8
4,028,424 - Psest_3856 0.51 -1.4
4,028,424 - Psest_3856 0.51 -2.0
4,028,424 - Psest_3856 0.51 -2.3
4,028,424 - Psest_3856 0.51 +0.3
4,028,424 - Psest_3856 0.51 -1.3
4,028,424 - Psest_3856 0.51 -0.4
4,028,424 - Psest_3856 0.51 +0.9
4,028,429 + Psest_3856 0.51 -0.6
4,028,429 + Psest_3856 0.51 -0.4
4,028,429 + Psest_3856 0.51 -0.1
4,028,429 + Psest_3856 0.51 +0.0
4,028,429 + Psest_3856 0.51 -0.7
4,028,429 + Psest_3856 0.51 -0.3
4,028,429 + Psest_3856 0.51 -0.6
4,028,429 + Psest_3856 0.51 -2.6
4,028,429 + Psest_3856 0.51 -1.7
4,028,429 + Psest_3856 0.51 -1.6
4,028,429 + Psest_3856 0.51 +1.4
4,028,429 + Psest_3856 0.51 +0.3
4,028,429 + Psest_3856 0.51 -1.6
4,028,429 + Psest_3856 0.51 -1.2
4,028,430 - Psest_3856 0.51 +0.6
4,028,430 - Psest_3856 0.51 +0.1
4,028,430 - Psest_3856 0.51 -0.3
4,028,430 - Psest_3856 0.51 +0.9
4,028,430 - Psest_3856 0.51 -1.0
4,028,430 - Psest_3856 0.51 +0.7
4,028,430 - Psest_3856 0.51 -0.7
4,028,430 - Psest_3856 0.51 -1.1
4,028,430 - Psest_3856 0.51 -1.1
4,028,439 + Psest_3856 0.52 -2.7
4,028,439 + Psest_3856 0.52 -1.2
4,028,439 + Psest_3856 0.52 +2.2
4,028,568 - Psest_3856 0.65 -1.5
4,028,768 + Psest_3856 0.85 -0.6
4,028,768 + Psest_3856 0.85 +0.4
4,028,768 + Psest_3856 0.85 -2.4
4,028,768 + Psest_3856 0.85 -0.6
4,028,769 - Psest_3856 0.86 -0.1
4,028,769 - Psest_3856 0.86 -1.0
4,028,769 - Psest_3856 0.86 +0.2
4,028,769 - Psest_3856 0.86 +3.2
4,028,864 + -2.3
4,028,864 + +1.0
4,028,864 + -1.0
4,028,865 - -1.5
4,028,865 - -0.5
4,028,865 - +1.2
4,028,865 - -1.5
4,028,865 - -0.3
4,028,865 - -0.3
4,028,865 - +0.4
4,029,010 - -2.2
4,029,023 - Psest_3857 0.11 +0.9
4,029,023 - Psest_3857 0.11 +1.2
4,029,222 + Psest_3857 0.37 -2.5
4,029,222 + Psest_3857 0.37 -1.3
4,029,300 + Psest_3857 0.47 -1.6
4,029,301 - Psest_3857 0.47 -1.4
4,029,342 + Psest_3857 0.52 +0.3
4,029,342 + Psest_3857 0.52 +0.3
4,029,343 - Psest_3857 0.52 -0.4
4,029,343 - Psest_3857 0.52 +2.4
4,029,577 - Psest_3857 0.82 -0.1
4,029,748 - -1.7
4,029,748 - +2.4
4,030,643 - -0.5
4,030,643 - -1.2
4,030,643 - -0.4
4,030,646 - -1.9
4,030,646 - -0.2
4,030,646 - -1.0
4,030,646 - -0.9

Or see this region's nucleotide sequence