Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3739

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3736 and Psest_3737 are separated by 14 nucleotidesPsest_3737 and Psest_3739 are separated by 312 nucleotidesPsest_3739 and Psest_3740 overlap by 4 nucleotides Psest_3736: Psest_3736 - Uncharacterized protein conserved in bacteria, at 3,908,990 to 3,909,445 _3736 Psest_3737: Psest_3737 - Putative threonine efflux protein, at 3,909,460 to 3,910,092 _3737 Psest_3739: Psest_3739 - Small-conductance mechanosensitive channel, at 3,910,405 to 3,910,986 _3739 Psest_3740: Psest_3740 - ATPase components of ABC transporters with duplicated ATPase domains, at 3,910,983 to 3,912,893 _3740 Position (kb) 3910 3911Strain fitness (log2 ratio) -2 -1 0 1 2at 3909.464 kb on - strandat 3909.464 kb on - strandat 3909.593 kb on + strand, within Psest_3737at 3909.593 kb on + strand, within Psest_3737at 3909.593 kb on + strand, within Psest_3737at 3909.594 kb on - strand, within Psest_3737at 3909.594 kb on - strand, within Psest_3737at 3909.594 kb on - strand, within Psest_3737at 3909.594 kb on - strand, within Psest_3737at 3909.594 kb on - strand, within Psest_3737at 3909.594 kb on - strand, within Psest_3737at 3909.647 kb on + strand, within Psest_3737at 3909.648 kb on - strand, within Psest_3737at 3909.648 kb on - strand, within Psest_3737at 3909.974 kb on + strand, within Psest_3737at 3910.251 kb on + strandat 3910.257 kb on + strandat 3910.258 kb on - strandat 3910.258 kb on - strandat 3910.302 kb on + strandat 3910.407 kb on - strandat 3910.427 kb on + strandat 3910.427 kb on + strandat 3910.894 kb on + strand, within Psest_3739at 3910.894 kb on + strand, within Psest_3739at 3910.894 kb on + strand, within Psest_3739at 3910.894 kb on + strand, within Psest_3739at 3910.894 kb on + strand, within Psest_3739at 3910.894 kb on + strand, within Psest_3739at 3910.898 kb on + strand, within Psest_3739at 3910.898 kb on + strand, within Psest_3739at 3910.898 kb on + strand, within Psest_3739at 3910.898 kb on + strand, within Psest_3739at 3910.898 kb on + strand, within Psest_3739at 3910.898 kb on + strand, within Psest_3739at 3910.899 kb on - strand, within Psest_3739at 3910.899 kb on - strand, within Psest_3739at 3911.350 kb on + strand, within Psest_3740at 3911.350 kb on + strand, within Psest_3740at 3911.350 kb on + strand, within Psest_3740at 3911.351 kb on - strand, within Psest_3740at 3911.759 kb on - strand, within Psest_3740at 3911.759 kb on - strand, within Psest_3740at 3911.873 kb on + strand, within Psest_3740at 3911.873 kb on + strand, within Psest_3740at 3911.873 kb on + strand, within Psest_3740at 3911.873 kb on + strand, within Psest_3740at 3911.873 kb on + strand, within Psest_3740at 3911.873 kb on + strand, within Psest_3740at 3911.874 kb on - strand, within Psest_3740at 3911.874 kb on - strand, within Psest_3740at 3911.874 kb on - strand, within Psest_3740at 3911.971 kb on - strand, within Psest_3740

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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3,909,464 - -0.8
3,909,464 - -0.7
3,909,593 + Psest_3737 0.21 +1.4
3,909,593 + Psest_3737 0.21 -1.8
3,909,593 + Psest_3737 0.21 -0.6
3,909,594 - Psest_3737 0.21 +1.1
3,909,594 - Psest_3737 0.21 -1.6
3,909,594 - Psest_3737 0.21 -0.9
3,909,594 - Psest_3737 0.21 +0.6
3,909,594 - Psest_3737 0.21 +2.6
3,909,594 - Psest_3737 0.21 -1.7
3,909,647 + Psest_3737 0.30 -1.0
3,909,648 - Psest_3737 0.30 -0.9
3,909,648 - Psest_3737 0.30 -1.7
3,909,974 + Psest_3737 0.81 -1.9
3,910,251 + +0.4
3,910,257 + +0.4
3,910,258 - -1.6
3,910,258 - -0.6
3,910,302 + -0.7
3,910,407 - +0.9
3,910,427 + -0.4
3,910,427 + +0.1
3,910,894 + Psest_3739 0.84 -0.7
3,910,894 + Psest_3739 0.84 +0.3
3,910,894 + Psest_3739 0.84 +0.0
3,910,894 + Psest_3739 0.84 +1.2
3,910,894 + Psest_3739 0.84 -1.5
3,910,894 + Psest_3739 0.84 -0.7
3,910,898 + Psest_3739 0.85 -0.9
3,910,898 + Psest_3739 0.85 +0.1
3,910,898 + Psest_3739 0.85 -0.4
3,910,898 + Psest_3739 0.85 -1.0
3,910,898 + Psest_3739 0.85 -1.8
3,910,898 + Psest_3739 0.85 +0.9
3,910,899 - Psest_3739 0.85 -0.7
3,910,899 - Psest_3739 0.85 -0.6
3,911,350 + Psest_3740 0.19 -0.1
3,911,350 + Psest_3740 0.19 -1.6
3,911,350 + Psest_3740 0.19 +0.3
3,911,351 - Psest_3740 0.19 -0.5
3,911,759 - Psest_3740 0.41 -1.6
3,911,759 - Psest_3740 0.41 +0.4
3,911,873 + Psest_3740 0.47 -1.4
3,911,873 + Psest_3740 0.47 -0.7
3,911,873 + Psest_3740 0.47 +1.8
3,911,873 + Psest_3740 0.47 -2.6
3,911,873 + Psest_3740 0.47 +1.4
3,911,873 + Psest_3740 0.47 +0.4
3,911,874 - Psest_3740 0.47 -0.2
3,911,874 - Psest_3740 0.47 +2.1
3,911,874 - Psest_3740 0.47 -1.3
3,911,971 - Psest_3740 0.52 -1.7

Or see this region's nucleotide sequence