Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3732

Experiment: Chlorate 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3731 and Psest_3732 are separated by 105 nucleotidesPsest_3732 and Psest_3733 are separated by 19 nucleotides Psest_3731: Psest_3731 - exopolyphosphatase, at 3,902,546 to 3,904,048 _3731 Psest_3732: Psest_3732 - polyphosphate kinase 1, at 3,904,154 to 3,906,370 _3732 Psest_3733: Psest_3733 - Delta-aminolevulinic acid dehydratase, at 3,906,390 to 3,907,403 _3733 Position (kb) 3904 3905 3906 3907Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3903.184 kb on + strand, within Psest_3731at 3903.184 kb on + strand, within Psest_3731at 3903.184 kb on + strand, within Psest_3731at 3903.184 kb on + strand, within Psest_3731at 3903.184 kb on + strand, within Psest_3731at 3903.184 kb on + strand, within Psest_3731at 3903.185 kb on - strand, within Psest_3731at 3903.185 kb on - strand, within Psest_3731at 3903.185 kb on - strand, within Psest_3731at 3903.185 kb on - strand, within Psest_3731at 3903.185 kb on - strand, within Psest_3731at 3903.185 kb on - strand, within Psest_3731at 3903.355 kb on - strand, within Psest_3731at 3903.452 kb on + strand, within Psest_3731at 3903.453 kb on - strand, within Psest_3731at 3903.521 kb on + strand, within Psest_3731at 3903.677 kb on + strand, within Psest_3731at 3903.677 kb on + strand, within Psest_3731at 3903.677 kb on + strand, within Psest_3731at 3903.677 kb on + strand, within Psest_3731at 3903.678 kb on - strand, within Psest_3731at 3903.678 kb on - strand, within Psest_3731at 3903.678 kb on - strand, within Psest_3731at 3903.678 kb on - strand, within Psest_3731at 3903.684 kb on - strand, within Psest_3731at 3903.788 kb on - strand, within Psest_3731at 3903.788 kb on - strand, within Psest_3731at 3903.799 kb on + strand, within Psest_3731at 3903.799 kb on + strand, within Psest_3731at 3903.799 kb on + strand, within Psest_3731at 3903.800 kb on - strand, within Psest_3731at 3903.909 kb on + strandat 3903.910 kb on - strandat 3904.029 kb on - strandat 3904.248 kb on + strandat 3904.407 kb on + strand, within Psest_3732at 3904.407 kb on + strand, within Psest_3732at 3904.408 kb on - strand, within Psest_3732at 3904.437 kb on + strand, within Psest_3732at 3904.437 kb on + strand, within Psest_3732at 3904.438 kb on - strand, within Psest_3732at 3904.578 kb on + strand, within Psest_3732at 3904.579 kb on - strand, within Psest_3732at 3904.579 kb on - strand, within Psest_3732at 3904.579 kb on - strand, within Psest_3732at 3904.630 kb on + strand, within Psest_3732at 3904.631 kb on - strand, within Psest_3732at 3904.816 kb on - strand, within Psest_3732at 3904.824 kb on + strand, within Psest_3732at 3904.824 kb on + strand, within Psest_3732at 3904.824 kb on + strand, within Psest_3732at 3904.848 kb on + strand, within Psest_3732at 3904.849 kb on - strand, within Psest_3732at 3904.947 kb on + strand, within Psest_3732at 3904.947 kb on + strand, within Psest_3732at 3904.948 kb on - strand, within Psest_3732at 3904.948 kb on - strand, within Psest_3732at 3904.948 kb on - strand, within Psest_3732at 3905.106 kb on + strand, within Psest_3732at 3905.283 kb on + strand, within Psest_3732at 3905.283 kb on + strand, within Psest_3732at 3905.284 kb on - strand, within Psest_3732at 3905.284 kb on - strand, within Psest_3732at 3905.284 kb on - strand, within Psest_3732at 3905.358 kb on + strand, within Psest_3732at 3905.841 kb on + strand, within Psest_3732at 3906.207 kb on + strandat 3906.207 kb on + strandat 3906.207 kb on + strandat 3906.207 kb on + strandat 3906.208 kb on - strandat 3906.208 kb on - strandat 3906.208 kb on - strandat 3906.208 kb on - strandat 3906.208 kb on - strandat 3906.405 kb on + strandat 3906.405 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
remove
3,903,184 + Psest_3731 0.42 -1.9
3,903,184 + Psest_3731 0.42 +0.9
3,903,184 + Psest_3731 0.42 -0.4
3,903,184 + Psest_3731 0.42 +1.3
3,903,184 + Psest_3731 0.42 -1.6
3,903,184 + Psest_3731 0.42 +0.1
3,903,185 - Psest_3731 0.43 +0.8
3,903,185 - Psest_3731 0.43 -1.9
3,903,185 - Psest_3731 0.43 -0.5
3,903,185 - Psest_3731 0.43 +1.0
3,903,185 - Psest_3731 0.43 -3.1
3,903,185 - Psest_3731 0.43 +0.3
3,903,355 - Psest_3731 0.54 -1.4
3,903,452 + Psest_3731 0.60 -0.7
3,903,453 - Psest_3731 0.60 -0.1
3,903,521 + Psest_3731 0.65 +0.8
3,903,677 + Psest_3731 0.75 -0.5
3,903,677 + Psest_3731 0.75 -0.7
3,903,677 + Psest_3731 0.75 -0.4
3,903,677 + Psest_3731 0.75 +0.9
3,903,678 - Psest_3731 0.75 -1.9
3,903,678 - Psest_3731 0.75 -2.0
3,903,678 - Psest_3731 0.75 -0.8
3,903,678 - Psest_3731 0.75 +0.8
3,903,684 - Psest_3731 0.76 -0.5
3,903,788 - Psest_3731 0.83 +0.2
3,903,788 - Psest_3731 0.83 -0.2
3,903,799 + Psest_3731 0.83 -1.5
3,903,799 + Psest_3731 0.83 -2.0
3,903,799 + Psest_3731 0.83 -1.4
3,903,800 - Psest_3731 0.83 +0.4
3,903,909 + +0.9
3,903,910 - +0.2
3,904,029 - +0.6
3,904,248 + -0.2
3,904,407 + Psest_3732 0.11 -1.8
3,904,407 + Psest_3732 0.11 +0.9
3,904,408 - Psest_3732 0.11 -1.9
3,904,437 + Psest_3732 0.13 -0.5
3,904,437 + Psest_3732 0.13 -1.9
3,904,438 - Psest_3732 0.13 -1.2
3,904,578 + Psest_3732 0.19 -1.4
3,904,579 - Psest_3732 0.19 -1.2
3,904,579 - Psest_3732 0.19 -1.7
3,904,579 - Psest_3732 0.19 -1.8
3,904,630 + Psest_3732 0.21 -1.5
3,904,631 - Psest_3732 0.22 -2.2
3,904,816 - Psest_3732 0.30 +0.5
3,904,824 + Psest_3732 0.30 -3.5
3,904,824 + Psest_3732 0.30 -1.4
3,904,824 + Psest_3732 0.30 -1.5
3,904,848 + Psest_3732 0.31 -1.4
3,904,849 - Psest_3732 0.31 -1.8
3,904,947 + Psest_3732 0.36 +0.1
3,904,947 + Psest_3732 0.36 -2.7
3,904,948 - Psest_3732 0.36 -3.1
3,904,948 - Psest_3732 0.36 -0.4
3,904,948 - Psest_3732 0.36 -0.4
3,905,106 + Psest_3732 0.43 -1.0
3,905,283 + Psest_3732 0.51 +1.4
3,905,283 + Psest_3732 0.51 +1.2
3,905,284 - Psest_3732 0.51 -3.4
3,905,284 - Psest_3732 0.51 +0.5
3,905,284 - Psest_3732 0.51 -1.7
3,905,358 + Psest_3732 0.54 -0.4
3,905,841 + Psest_3732 0.76 +1.5
3,906,207 + -0.9
3,906,207 + -0.1
3,906,207 + -3.4
3,906,207 + -0.5
3,906,208 - -2.5
3,906,208 - -2.1
3,906,208 - -3.1
3,906,208 - +0.7
3,906,208 - +3.0
3,906,405 + -0.1
3,906,405 + -1.0

Or see this region's nucleotide sequence