Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3383

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3381 and Psest_3382 are separated by 221 nucleotidesPsest_3382 and Psest_3383 are separated by 81 nucleotidesPsest_3383 and Psest_3384 are separated by 7 nucleotides Psest_3381: Psest_3381 - integral membrane protein MviN, at 3,551,955 to 3,553,502 _3381 Psest_3382: Psest_3382 - ribosomal protein S20, at 3,553,724 to 3,554,002 _3382 Psest_3383: Psest_3383 - Uncharacterized protein conserved in bacteria, at 3,554,084 to 3,554,548 _3383 Psest_3384: Psest_3384 - glutamate 5-kinase, at 3,554,556 to 3,555,674 _3384 Position (kb) 3554 3555Strain fitness (log2 ratio) -2 -1 0 1 2at 3553.513 kb on - strandat 3553.513 kb on - strandat 3553.571 kb on + strandat 3553.572 kb on - strandat 3553.572 kb on - strandat 3554.000 kb on + strandat 3554.164 kb on - strand, within Psest_3383at 3554.164 kb on - strand, within Psest_3383at 3554.183 kb on - strand, within Psest_3383at 3554.228 kb on + strand, within Psest_3383at 3554.229 kb on - strand, within Psest_3383at 3554.385 kb on + strand, within Psest_3383at 3554.385 kb on + strand, within Psest_3383at 3554.386 kb on - strand, within Psest_3383at 3554.467 kb on + strand, within Psest_3383at 3554.533 kb on + strandat 3554.585 kb on + strandat 3554.585 kb on + strandat 3554.586 kb on - strandat 3554.586 kb on - strandat 3554.586 kb on - strandat 3554.586 kb on - strandat 3554.586 kb on - strandat 3554.586 kb on - strandat 3554.586 kb on - strandat 3554.586 kb on - strandat 3554.606 kb on - strandat 3554.606 kb on - strandat 3554.606 kb on - strandat 3554.671 kb on + strand, within Psest_3384at 3554.671 kb on + strand, within Psest_3384at 3554.671 kb on + strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.672 kb on - strand, within Psest_3384at 3554.692 kb on - strand, within Psest_3384at 3554.972 kb on + strand, within Psest_3384at 3554.973 kb on - strand, within Psest_3384at 3554.973 kb on - strand, within Psest_3384at 3554.973 kb on - strand, within Psest_3384at 3554.973 kb on - strand, within Psest_3384at 3554.973 kb on - strand, within Psest_3384at 3554.973 kb on - strand, within Psest_3384at 3554.973 kb on - strand, within Psest_3384at 3554.973 kb on - strand, within Psest_3384at 3555.296 kb on + strand, within Psest_3384at 3555.297 kb on - strand, within Psest_3384at 3555.306 kb on - strand, within Psest_3384at 3555.323 kb on - strand, within Psest_3384

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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3,553,513 - +1.9
3,553,513 - -1.4
3,553,571 + -1.0
3,553,572 - -1.7
3,553,572 - -0.3
3,554,000 + -0.4
3,554,164 - Psest_3383 0.17 -1.0
3,554,164 - Psest_3383 0.17 -2.1
3,554,183 - Psest_3383 0.21 +0.3
3,554,228 + Psest_3383 0.31 -0.7
3,554,229 - Psest_3383 0.31 -1.0
3,554,385 + Psest_3383 0.65 -1.4
3,554,385 + Psest_3383 0.65 -0.6
3,554,386 - Psest_3383 0.65 +0.0
3,554,467 + Psest_3383 0.82 -0.7
3,554,533 + -0.2
3,554,585 + -1.7
3,554,585 + +1.0
3,554,586 - +0.6
3,554,586 - +0.9
3,554,586 - +2.6
3,554,586 - +2.5
3,554,586 - +2.0
3,554,586 - +1.6
3,554,586 - -1.5
3,554,586 - -1.6
3,554,606 - -1.5
3,554,606 - -2.2
3,554,606 - -0.4
3,554,671 + Psest_3384 0.10 -0.9
3,554,671 + Psest_3384 0.10 -1.9
3,554,671 + Psest_3384 0.10 +0.0
3,554,672 - Psest_3384 0.10 -0.4
3,554,672 - Psest_3384 0.10 -1.0
3,554,672 - Psest_3384 0.10 +0.8
3,554,672 - Psest_3384 0.10 -0.4
3,554,672 - Psest_3384 0.10 +1.3
3,554,672 - Psest_3384 0.10 +0.6
3,554,672 - Psest_3384 0.10 -0.8
3,554,672 - Psest_3384 0.10 -1.1
3,554,672 - Psest_3384 0.10 -0.4
3,554,672 - Psest_3384 0.10 -1.3
3,554,672 - Psest_3384 0.10 -0.7
3,554,672 - Psest_3384 0.10 -0.5
3,554,672 - Psest_3384 0.10 +0.8
3,554,672 - Psest_3384 0.10 -1.2
3,554,672 - Psest_3384 0.10 -0.1
3,554,672 - Psest_3384 0.10 -0.6
3,554,672 - Psest_3384 0.10 -0.6
3,554,692 - Psest_3384 0.12 -0.8
3,554,972 + Psest_3384 0.37 -2.2
3,554,973 - Psest_3384 0.37 -1.5
3,554,973 - Psest_3384 0.37 -1.4
3,554,973 - Psest_3384 0.37 -2.2
3,554,973 - Psest_3384 0.37 +0.3
3,554,973 - Psest_3384 0.37 +0.3
3,554,973 - Psest_3384 0.37 +0.0
3,554,973 - Psest_3384 0.37 -1.0
3,554,973 - Psest_3384 0.37 +1.3
3,555,296 + Psest_3384 0.66 -0.9
3,555,297 - Psest_3384 0.66 -2.4
3,555,306 - Psest_3384 0.67 -1.3
3,555,323 - Psest_3384 0.69 +1.1

Or see this region's nucleotide sequence