Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3331

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3330 and Psest_3331 are separated by 137 nucleotidesPsest_3331 and Psest_3332 are separated by 64 nucleotides Psest_3330: Psest_3330 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit, at 3,495,474 to 3,496,919 _3330 Psest_3331: Psest_3331 - rare lipoprotein A, at 3,497,057 to 3,497,458 _3331 Psest_3332: Psest_3332 - K+-dependent Na+/Ca+ exchanger related-protein, at 3,497,523 to 3,498,608 _3332 Position (kb) 3497 3498Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3496.917 kb on + strandat 3496.918 kb on - strandat 3496.918 kb on - strandat 3497.004 kb on - strandat 3497.193 kb on - strand, within Psest_3331at 3497.193 kb on - strand, within Psest_3331at 3497.193 kb on - strand, within Psest_3331at 3497.195 kb on + strand, within Psest_3331at 3497.195 kb on + strand, within Psest_3331at 3497.196 kb on - strand, within Psest_3331at 3497.436 kb on + strandat 3497.437 kb on - strandat 3497.437 kb on - strandat 3497.440 kb on + strandat 3497.440 kb on + strandat 3497.441 kb on - strandat 3497.441 kb on - strandat 3497.508 kb on + strandat 3497.522 kb on + strandat 3497.522 kb on + strandat 3497.522 kb on + strandat 3497.522 kb on + strandat 3497.522 kb on + strandat 3497.522 kb on + strandat 3497.522 kb on + strandat 3497.522 kb on + strandat 3497.522 kb on + strandat 3497.522 kb on + strandat 3497.523 kb on - strandat 3497.523 kb on - strandat 3497.523 kb on - strandat 3497.523 kb on - strandat 3497.523 kb on - strandat 3497.523 kb on - strandat 3497.523 kb on - strandat 3497.593 kb on + strandat 3497.711 kb on - strand, within Psest_3332at 3497.766 kb on - strand, within Psest_3332at 3498.040 kb on - strand, within Psest_3332at 3498.040 kb on - strand, within Psest_3332at 3498.101 kb on + strand, within Psest_3332at 3498.456 kb on + strand, within Psest_3332

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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3,496,917 + +0.4
3,496,918 - +0.7
3,496,918 - -1.2
3,497,004 - -0.7
3,497,193 - Psest_3331 0.34 -0.3
3,497,193 - Psest_3331 0.34 +3.7
3,497,193 - Psest_3331 0.34 -1.7
3,497,195 + Psest_3331 0.34 -2.5
3,497,195 + Psest_3331 0.34 +2.4
3,497,196 - Psest_3331 0.35 -1.2
3,497,436 + +0.9
3,497,437 - +0.3
3,497,437 - +0.0
3,497,440 + +2.1
3,497,440 + -0.6
3,497,441 - +1.1
3,497,441 - +0.7
3,497,508 + +0.2
3,497,522 + +2.1
3,497,522 + +0.9
3,497,522 + -0.1
3,497,522 + -0.3
3,497,522 + -1.7
3,497,522 + -0.3
3,497,522 + +0.1
3,497,522 + -0.3
3,497,522 + +0.3
3,497,522 + +4.5
3,497,523 - +0.7
3,497,523 - +1.5
3,497,523 - -1.0
3,497,523 - +0.2
3,497,523 - -0.1
3,497,523 - +0.4
3,497,523 - -1.0
3,497,593 + +0.8
3,497,711 - Psest_3332 0.17 +0.4
3,497,766 - Psest_3332 0.22 -0.1
3,498,040 - Psest_3332 0.48 +0.9
3,498,040 - Psest_3332 0.48 +0.7
3,498,101 + Psest_3332 0.53 +0.9
3,498,456 + Psest_3332 0.86 +1.1

Or see this region's nucleotide sequence