Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3140

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3137 and Psest_3138 are separated by 44 nucleotidesPsest_3138 and Psest_3139 overlap by 4 nucleotidesPsest_3139 and Psest_3140 are separated by 48 nucleotidesPsest_3140 and Psest_3141 are separated by 108 nucleotidesPsest_3141 and Psest_3142 are separated by 58 nucleotides Psest_3137: Psest_3137 - phosphoribosylglycinamide formyltransferase 2, at 3,312,782 to 3,313,963 _3137 Psest_3138: Psest_3138 - Predicted Fe-S protein, at 3,314,008 to 3,314,199 _3138 Psest_3139: Psest_3139 - Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily, at 3,314,196 to 3,314,717 _3139 Psest_3140: Psest_3140 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 3,314,766 to 3,315,491 _3140 Psest_3141: Psest_3141 - ADP-ribose pyrophosphatase, at 3,315,600 to 3,316,163 _3141 Psest_3142: Psest_3142 - Uncharacterized protein conserved in bacteria, at 3,316,222 to 3,316,725 _3142 Position (kb) 3314 3315 3316Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3313.790 kb on + strand, within Psest_3137at 3313.790 kb on + strand, within Psest_3137at 3313.790 kb on + strand, within Psest_3137at 3313.791 kb on - strand, within Psest_3137at 3313.791 kb on - strand, within Psest_3137at 3313.791 kb on - strand, within Psest_3137at 3313.841 kb on + strand, within Psest_3137at 3313.842 kb on - strand, within Psest_3137at 3314.009 kb on + strandat 3314.009 kb on + strandat 3314.009 kb on + strandat 3314.010 kb on - strandat 3314.010 kb on - strandat 3314.238 kb on - strandat 3314.245 kb on + strandat 3314.245 kb on + strandat 3314.245 kb on + strandat 3314.246 kb on - strandat 3314.246 kb on - strandat 3314.246 kb on - strandat 3314.440 kb on + strand, within Psest_3139at 3314.440 kb on + strand, within Psest_3139at 3314.453 kb on + strand, within Psest_3139at 3314.453 kb on + strand, within Psest_3139at 3314.453 kb on + strand, within Psest_3139at 3314.454 kb on - strand, within Psest_3139at 3314.454 kb on - strand, within Psest_3139at 3314.526 kb on - strand, within Psest_3139at 3314.553 kb on - strand, within Psest_3139at 3314.755 kb on - strandat 3314.836 kb on + strandat 3314.836 kb on + strandat 3314.836 kb on + strandat 3314.836 kb on + strandat 3314.837 kb on - strandat 3314.837 kb on - strandat 3314.837 kb on - strandat 3314.839 kb on - strand, within Psest_3140at 3314.839 kb on - strand, within Psest_3140at 3314.883 kb on + strand, within Psest_3140at 3314.917 kb on + strand, within Psest_3140at 3314.917 kb on + strand, within Psest_3140at 3314.917 kb on + strand, within Psest_3140at 3314.917 kb on + strand, within Psest_3140at 3314.917 kb on + strand, within Psest_3140at 3314.918 kb on - strand, within Psest_3140at 3314.918 kb on - strand, within Psest_3140at 3314.918 kb on - strand, within Psest_3140at 3314.918 kb on - strand, within Psest_3140at 3314.918 kb on - strand, within Psest_3140at 3314.918 kb on - strand, within Psest_3140at 3314.935 kb on + strand, within Psest_3140at 3315.037 kb on + strand, within Psest_3140at 3315.037 kb on + strand, within Psest_3140at 3315.038 kb on - strand, within Psest_3140at 3315.058 kb on + strand, within Psest_3140at 3315.059 kb on - strand, within Psest_3140at 3315.059 kb on - strand, within Psest_3140at 3315.059 kb on - strand, within Psest_3140at 3315.059 kb on - strand, within Psest_3140at 3315.059 kb on - strand, within Psest_3140at 3315.216 kb on + strand, within Psest_3140at 3315.217 kb on - strand, within Psest_3140at 3315.350 kb on - strand, within Psest_3140at 3315.369 kb on + strand, within Psest_3140at 3315.369 kb on + strand, within Psest_3140at 3315.370 kb on - strand, within Psest_3140at 3315.370 kb on - strand, within Psest_3140at 3315.452 kb on - strandat 3315.538 kb on - strandat 3315.607 kb on - strandat 3315.897 kb on + strand, within Psest_3141at 3315.897 kb on + strand, within Psest_3141at 3315.897 kb on + strand, within Psest_3141at 3315.897 kb on + strand, within Psest_3141at 3315.898 kb on - strand, within Psest_3141at 3315.898 kb on - strand, within Psest_3141at 3315.898 kb on - strand, within Psest_3141at 3315.900 kb on - strand, within Psest_3141at 3315.900 kb on - strand, within Psest_3141at 3315.900 kb on - strand, within Psest_3141at 3315.900 kb on - strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.933 kb on + strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3315.934 kb on - strand, within Psest_3141at 3316.064 kb on - strand, within Psest_3141at 3316.064 kb on - strand, within Psest_3141at 3316.064 kb on - strand, within Psest_3141at 3316.064 kb on - strand, within Psest_3141at 3316.064 kb on - strand, within Psest_3141at 3316.064 kb on - strand, within Psest_3141at 3316.064 kb on - strand, within Psest_3141at 3316.257 kb on + strandat 3316.257 kb on + strandat 3316.258 kb on - strandat 3316.287 kb on + strand, within Psest_3142at 3316.453 kb on + strand, within Psest_3142at 3316.453 kb on + strand, within Psest_3142at 3316.453 kb on + strand, within Psest_3142at 3316.453 kb on + strand, within Psest_3142at 3316.453 kb on + strand, within Psest_3142at 3316.453 kb on + strand, within Psest_3142at 3316.453 kb on + strand, within Psest_3142at 3316.454 kb on - strand, within Psest_3142at 3316.454 kb on - strand, within Psest_3142at 3316.454 kb on - strand, within Psest_3142at 3316.454 kb on - strand, within Psest_3142at 3316.482 kb on + strand, within Psest_3142at 3316.482 kb on + strand, within Psest_3142at 3316.483 kb on - strand, within Psest_3142at 3316.483 kb on - strand, within Psest_3142at 3316.483 kb on - strand, within Psest_3142at 3316.486 kb on + strand, within Psest_3142at 3316.486 kb on + strand, within Psest_3142at 3316.486 kb on + strand, within Psest_3142at 3316.486 kb on + strand, within Psest_3142at 3316.486 kb on + strand, within Psest_3142at 3316.486 kb on + strand, within Psest_3142at 3316.486 kb on + strand, within Psest_3142at 3316.486 kb on + strand, within Psest_3142at 3316.486 kb on + strand, within Psest_3142at 3316.486 kb on + strand, within Psest_3142at 3316.486 kb on + strand, within Psest_3142at 3316.486 kb on + strand, within Psest_3142at 3316.486 kb on + strand, within Psest_3142at 3316.487 kb on - strand, within Psest_3142at 3316.487 kb on - strand, within Psest_3142at 3316.487 kb on - strand, within Psest_3142at 3316.487 kb on - strand, within Psest_3142at 3316.487 kb on - strand, within Psest_3142at 3316.487 kb on - strand, within Psest_3142at 3316.487 kb on - strand, within Psest_3142at 3316.487 kb on - strand, within Psest_3142

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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3,313,790 + Psest_3137 0.85 +0.7
3,313,790 + Psest_3137 0.85 -1.0
3,313,790 + Psest_3137 0.85 -0.2
3,313,791 - Psest_3137 0.85 -1.2
3,313,791 - Psest_3137 0.85 -1.6
3,313,791 - Psest_3137 0.85 -3.6
3,313,841 + Psest_3137 0.90 +2.0
3,313,842 - Psest_3137 0.90 -3.0
3,314,009 + -1.2
3,314,009 + -0.6
3,314,009 + -0.9
3,314,010 - +0.7
3,314,010 - -1.1
3,314,238 - -0.6
3,314,245 + -2.0
3,314,245 + -0.1
3,314,245 + +1.0
3,314,246 - -0.9
3,314,246 - -1.4
3,314,246 - -0.1
3,314,440 + Psest_3139 0.47 +1.1
3,314,440 + Psest_3139 0.47 -1.3
3,314,453 + Psest_3139 0.49 +0.4
3,314,453 + Psest_3139 0.49 -1.2
3,314,453 + Psest_3139 0.49 -0.6
3,314,454 - Psest_3139 0.49 +0.6
3,314,454 - Psest_3139 0.49 -2.6
3,314,526 - Psest_3139 0.63 -0.7
3,314,553 - Psest_3139 0.68 -3.4
3,314,755 - -1.2
3,314,836 + +1.8
3,314,836 + +0.4
3,314,836 + +0.1
3,314,836 + -0.9
3,314,837 - -1.7
3,314,837 - +1.7
3,314,837 - +1.9
3,314,839 - Psest_3140 0.10 -0.8
3,314,839 - Psest_3140 0.10 -2.8
3,314,883 + Psest_3140 0.16 +1.1
3,314,917 + Psest_3140 0.21 -2.7
3,314,917 + Psest_3140 0.21 -2.4
3,314,917 + Psest_3140 0.21 -1.3
3,314,917 + Psest_3140 0.21 -3.2
3,314,917 + Psest_3140 0.21 -2.7
3,314,918 - Psest_3140 0.21 -1.4
3,314,918 - Psest_3140 0.21 -2.1
3,314,918 - Psest_3140 0.21 -3.1
3,314,918 - Psest_3140 0.21 -1.7
3,314,918 - Psest_3140 0.21 -1.6
3,314,918 - Psest_3140 0.21 -0.6
3,314,935 + Psest_3140 0.23 -2.1
3,315,037 + Psest_3140 0.37 -2.2
3,315,037 + Psest_3140 0.37 -0.7
3,315,038 - Psest_3140 0.37 +0.7
3,315,058 + Psest_3140 0.40 +0.0
3,315,059 - Psest_3140 0.40 -1.1
3,315,059 - Psest_3140 0.40 -1.5
3,315,059 - Psest_3140 0.40 -0.6
3,315,059 - Psest_3140 0.40 -1.3
3,315,059 - Psest_3140 0.40 +1.3
3,315,216 + Psest_3140 0.62 -1.3
3,315,217 - Psest_3140 0.62 -0.3
3,315,350 - Psest_3140 0.80 -2.2
3,315,369 + Psest_3140 0.83 -1.5
3,315,369 + Psest_3140 0.83 -0.7
3,315,370 - Psest_3140 0.83 -3.4
3,315,370 - Psest_3140 0.83 +0.5
3,315,452 - +0.7
3,315,538 - -3.9
3,315,607 - +0.0
3,315,897 + Psest_3141 0.53 -1.7
3,315,897 + Psest_3141 0.53 -1.7
3,315,897 + Psest_3141 0.53 +1.7
3,315,897 + Psest_3141 0.53 -1.4
3,315,898 - Psest_3141 0.53 -3.3
3,315,898 - Psest_3141 0.53 +1.9
3,315,898 - Psest_3141 0.53 +0.7
3,315,900 - Psest_3141 0.53 -1.4
3,315,900 - Psest_3141 0.53 +0.6
3,315,900 - Psest_3141 0.53 +0.9
3,315,900 - Psest_3141 0.53 -1.1
3,315,933 + Psest_3141 0.59 +2.0
3,315,933 + Psest_3141 0.59 -1.8
3,315,933 + Psest_3141 0.59 -2.3
3,315,933 + Psest_3141 0.59 -0.7
3,315,933 + Psest_3141 0.59 -3.6
3,315,933 + Psest_3141 0.59 -0.2
3,315,933 + Psest_3141 0.59 -1.6
3,315,933 + Psest_3141 0.59 -0.8
3,315,933 + Psest_3141 0.59 -0.1
3,315,933 + Psest_3141 0.59 -0.4
3,315,933 + Psest_3141 0.59 -0.4
3,315,933 + Psest_3141 0.59 -0.3
3,315,933 + Psest_3141 0.59 -1.4
3,315,933 + Psest_3141 0.59 -2.7
3,315,933 + Psest_3141 0.59 -0.1
3,315,933 + Psest_3141 0.59 +1.1
3,315,933 + Psest_3141 0.59 +0.6
3,315,933 + Psest_3141 0.59 -0.4
3,315,933 + Psest_3141 0.59 -1.3
3,315,934 - Psest_3141 0.59 +0.4
3,315,934 - Psest_3141 0.59 +0.0
3,315,934 - Psest_3141 0.59 -2.1
3,315,934 - Psest_3141 0.59 -0.1
3,315,934 - Psest_3141 0.59 -0.9
3,315,934 - Psest_3141 0.59 -0.1
3,315,934 - Psest_3141 0.59 -0.1
3,315,934 - Psest_3141 0.59 -2.6
3,315,934 - Psest_3141 0.59 -1.8
3,315,934 - Psest_3141 0.59 -3.1
3,315,934 - Psest_3141 0.59 +3.0
3,315,934 - Psest_3141 0.59 -1.0
3,315,934 - Psest_3141 0.59 -1.0
3,315,934 - Psest_3141 0.59 +0.3
3,315,934 - Psest_3141 0.59 -1.2
3,315,934 - Psest_3141 0.59 -1.5
3,315,934 - Psest_3141 0.59 -1.0
3,315,934 - Psest_3141 0.59 +0.3
3,316,064 - Psest_3141 0.82 -0.3
3,316,064 - Psest_3141 0.82 +1.5
3,316,064 - Psest_3141 0.82 +0.7
3,316,064 - Psest_3141 0.82 -1.0
3,316,064 - Psest_3141 0.82 +0.8
3,316,064 - Psest_3141 0.82 -2.4
3,316,064 - Psest_3141 0.82 -0.7
3,316,257 + -0.8
3,316,257 + +1.0
3,316,258 - -0.1
3,316,287 + Psest_3142 0.13 -0.4
3,316,453 + Psest_3142 0.46 +0.1
3,316,453 + Psest_3142 0.46 -1.1
3,316,453 + Psest_3142 0.46 -0.3
3,316,453 + Psest_3142 0.46 -1.8
3,316,453 + Psest_3142 0.46 +0.0
3,316,453 + Psest_3142 0.46 +2.2
3,316,453 + Psest_3142 0.46 -0.6
3,316,454 - Psest_3142 0.46 +0.3
3,316,454 - Psest_3142 0.46 +0.8
3,316,454 - Psest_3142 0.46 +0.6
3,316,454 - Psest_3142 0.46 -2.3
3,316,482 + Psest_3142 0.52 +1.0
3,316,482 + Psest_3142 0.52 +0.6
3,316,483 - Psest_3142 0.52 +1.6
3,316,483 - Psest_3142 0.52 -2.9
3,316,483 - Psest_3142 0.52 -0.6
3,316,486 + Psest_3142 0.52 -2.8
3,316,486 + Psest_3142 0.52 +1.0
3,316,486 + Psest_3142 0.52 +1.3
3,316,486 + Psest_3142 0.52 +1.1
3,316,486 + Psest_3142 0.52 -1.7
3,316,486 + Psest_3142 0.52 -1.3
3,316,486 + Psest_3142 0.52 +2.2
3,316,486 + Psest_3142 0.52 +0.0
3,316,486 + Psest_3142 0.52 +1.3
3,316,486 + Psest_3142 0.52 +1.0
3,316,486 + Psest_3142 0.52 -1.1
3,316,486 + Psest_3142 0.52 -2.6
3,316,486 + Psest_3142 0.52 -1.3
3,316,487 - Psest_3142 0.53 -1.2
3,316,487 - Psest_3142 0.53 -1.1
3,316,487 - Psest_3142 0.53 -1.1
3,316,487 - Psest_3142 0.53 +1.2
3,316,487 - Psest_3142 0.53 +2.4
3,316,487 - Psest_3142 0.53 -2.3
3,316,487 - Psest_3142 0.53 +0.8
3,316,487 - Psest_3142 0.53 -0.7

Or see this region's nucleotide sequence