Experiment: Chlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3027 and Psest_3028 are separated by 78 nucleotides Psest_3028 and Psest_3029 are separated by 58 nucleotides Psest_3029 and Psest_3030 are separated by 76 nucleotides
Psest_3027: Psest_3027 - AZL_007950 family protein, at 3,214,097 to 3,214,681
_3027
Psest_3028: Psest_3028 - Protein of unknown function (DUF2946)., at 3,214,760 to 3,215,125
_3028
Psest_3029: Psest_3029 - 3-methyladenine DNA glycosylase, at 3,215,184 to 3,215,855
_3029
Psest_3030: Psest_3030 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 3,215,932 to 3,217,005
_3030
Position (kb)
3215
3216 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3214.277 kb on + strand, within Psest_3027 at 3214.277 kb on + strand, within Psest_3027 at 3214.277 kb on + strand, within Psest_3027 at 3214.278 kb on - strand, within Psest_3027 at 3214.283 kb on + strand, within Psest_3027 at 3214.284 kb on - strand, within Psest_3027 at 3214.441 kb on - strand, within Psest_3027 at 3214.534 kb on - strand, within Psest_3027 at 3214.976 kb on - strand, within Psest_3028 at 3215.090 kb on + strand at 3215.090 kb on + strand at 3215.091 kb on - strand at 3215.091 kb on - strand at 3215.091 kb on - strand at 3215.136 kb on + strand at 3215.137 kb on - strand at 3215.731 kb on + strand, within Psest_3029 at 3215.827 kb on + strand at 3215.845 kb on + strand at 3215.845 kb on + strand at 3215.846 kb on - strand at 3215.846 kb on - strand at 3215.846 kb on - strand at 3215.846 kb on - strand at 3215.846 kb on - strand at 3215.846 kb on - strand at 3215.846 kb on - strand at 3216.159 kb on + strand, within Psest_3030 at 3216.248 kb on + strand, within Psest_3030 at 3216.248 kb on + strand, within Psest_3030 at 3216.248 kb on + strand, within Psest_3030 at 3216.248 kb on + strand, within Psest_3030 at 3216.249 kb on - strand, within Psest_3030 at 3216.249 kb on - strand, within Psest_3030 at 3216.477 kb on + strand, within Psest_3030 at 3216.478 kb on - strand, within Psest_3030 at 3216.478 kb on - strand, within Psest_3030 at 3216.478 kb on - strand, within Psest_3030 at 3216.478 kb on - strand, within Psest_3030 at 3216.478 kb on - strand, within Psest_3030 at 3216.478 kb on - strand, within Psest_3030 at 3216.518 kb on + strand, within Psest_3030 at 3216.576 kb on + strand, within Psest_3030 at 3216.692 kb on + strand, within Psest_3030 at 3216.692 kb on + strand, within Psest_3030 at 3216.693 kb on - strand, within Psest_3030 at 3216.693 kb on - strand, within Psest_3030 at 3216.759 kb on - strand, within Psest_3030
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 75 mM remove 3,214,277 + Psest_3027 0.31 -0.9 3,214,277 + Psest_3027 0.31 +0.6 3,214,277 + Psest_3027 0.31 -2.2 3,214,278 - Psest_3027 0.31 +1.0 3,214,283 + Psest_3027 0.32 -1.0 3,214,284 - Psest_3027 0.32 +1.3 3,214,441 - Psest_3027 0.59 +0.3 3,214,534 - Psest_3027 0.75 +2.5 3,214,976 - Psest_3028 0.59 -0.2 3,215,090 + +0.9 3,215,090 + -0.3 3,215,091 - -0.2 3,215,091 - -0.7 3,215,091 - +0.0 3,215,136 + -1.0 3,215,137 - +0.6 3,215,731 + Psest_3029 0.81 +0.6 3,215,827 + +0.6 3,215,845 + -0.2 3,215,845 + +1.0 3,215,846 - -2.2 3,215,846 - -1.0 3,215,846 - +0.4 3,215,846 - +0.0 3,215,846 - -1.1 3,215,846 - -0.8 3,215,846 - +1.0 3,216,159 + Psest_3030 0.21 +1.6 3,216,248 + Psest_3030 0.29 -1.6 3,216,248 + Psest_3030 0.29 +0.6 3,216,248 + Psest_3030 0.29 -0.1 3,216,248 + Psest_3030 0.29 -1.3 3,216,249 - Psest_3030 0.30 -0.4 3,216,249 - Psest_3030 0.30 -0.5 3,216,477 + Psest_3030 0.51 +0.9 3,216,478 - Psest_3030 0.51 -1.6 3,216,478 - Psest_3030 0.51 -1.4 3,216,478 - Psest_3030 0.51 +1.1 3,216,478 - Psest_3030 0.51 -3.4 3,216,478 - Psest_3030 0.51 -2.3 3,216,478 - Psest_3030 0.51 +0.0 3,216,518 + Psest_3030 0.55 +1.8 3,216,576 + Psest_3030 0.60 -2.9 3,216,692 + Psest_3030 0.71 +0.0 3,216,692 + Psest_3030 0.71 +0.1 3,216,693 - Psest_3030 0.71 +0.4 3,216,693 - Psest_3030 0.71 -0.4 3,216,759 - Psest_3030 0.77 -1.3
Or see this region's nucleotide sequence