Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2995

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2992 and Psest_2993 are separated by 112 nucleotidesPsest_2993 and Psest_2994 are separated by 90 nucleotidesPsest_2994 and Psest_2995 overlap by 4 nucleotidesPsest_2995 and Psest_2996 are separated by 141 nucleotides Psest_2992: Psest_2992 - Uncharacterized conserved protein, at 3,183,561 to 3,184,010 _2992 Psest_2993: Psest_2993 - hypothetical protein, at 3,184,123 to 3,184,527 _2993 Psest_2994: Psest_2994 - Uncharacterized protein conserved in bacteria, at 3,184,618 to 3,184,911 _2994 Psest_2995: Psest_2995 - ribonuclease D, at 3,184,908 to 3,186,032 _2995 Psest_2996: Psest_2996 - Rhodanese-related sulfurtransferase, at 3,186,174 to 3,187,019 _2996 Position (kb) 3184 3185 3186 3187Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3184.016 kb on + strandat 3184.016 kb on + strandat 3184.016 kb on + strandat 3184.016 kb on + strandat 3184.017 kb on - strandat 3184.017 kb on - strandat 3184.489 kb on + strandat 3184.541 kb on - strandat 3184.564 kb on + strandat 3184.583 kb on - strandat 3184.667 kb on + strand, within Psest_2994at 3184.667 kb on + strand, within Psest_2994at 3184.667 kb on + strand, within Psest_2994at 3184.667 kb on + strand, within Psest_2994at 3184.667 kb on + strand, within Psest_2994at 3184.667 kb on + strand, within Psest_2994at 3184.667 kb on + strand, within Psest_2994at 3184.668 kb on - strand, within Psest_2994at 3184.668 kb on - strand, within Psest_2994at 3184.668 kb on - strand, within Psest_2994at 3184.668 kb on - strand, within Psest_2994at 3184.668 kb on - strand, within Psest_2994at 3184.668 kb on - strand, within Psest_2994at 3184.856 kb on + strand, within Psest_2994at 3184.857 kb on - strand, within Psest_2994at 3184.857 kb on - strand, within Psest_2994at 3184.857 kb on - strand, within Psest_2994at 3184.862 kb on + strand, within Psest_2994at 3184.862 kb on + strand, within Psest_2994at 3184.862 kb on + strand, within Psest_2994at 3184.862 kb on + strand, within Psest_2994at 3184.862 kb on + strand, within Psest_2994at 3184.863 kb on - strand, within Psest_2994at 3184.863 kb on - strand, within Psest_2994at 3184.863 kb on - strand, within Psest_2994at 3184.863 kb on - strand, within Psest_2994at 3184.863 kb on - strand, within Psest_2994at 3184.863 kb on - strand, within Psest_2994at 3184.863 kb on - strand, within Psest_2994at 3184.863 kb on - strand, within Psest_2994at 3184.863 kb on - strand, within Psest_2994at 3184.863 kb on - strand, within Psest_2994at 3184.863 kb on - strand, within Psest_2994at 3184.863 kb on - strand, within Psest_2994at 3184.888 kb on - strandat 3184.888 kb on - strandat 3184.889 kb on + strandat 3184.889 kb on + strandat 3185.576 kb on - strand, within Psest_2995at 3185.922 kb on - strandat 3185.956 kb on + strandat 3185.957 kb on - strandat 3186.085 kb on + strandat 3186.085 kb on + strandat 3186.085 kb on + strandat 3186.085 kb on + strandat 3186.085 kb on + strandat 3186.085 kb on + strandat 3186.085 kb on + strandat 3186.085 kb on + strandat 3186.085 kb on + strandat 3186.085 kb on + strandat 3186.085 kb on + strandat 3186.085 kb on + strandat 3186.085 kb on + strandat 3186.085 kb on + strandat 3186.085 kb on + strandat 3186.085 kb on + strandat 3186.086 kb on - strandat 3186.087 kb on + strandat 3186.087 kb on + strandat 3186.087 kb on + strandat 3186.087 kb on + strandat 3186.087 kb on + strandat 3186.087 kb on + strandat 3186.087 kb on + strandat 3186.087 kb on + strandat 3186.087 kb on + strandat 3186.087 kb on + strandat 3186.087 kb on + strandat 3186.087 kb on + strandat 3186.087 kb on + strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.088 kb on - strandat 3186.089 kb on + strandat 3186.089 kb on + strandat 3186.089 kb on + strandat 3186.090 kb on - strandat 3186.090 kb on - strandat 3186.090 kb on - strandat 3186.139 kb on + strandat 3186.276 kb on + strand, within Psest_2996at 3186.448 kb on + strand, within Psest_2996at 3186.448 kb on + strand, within Psest_2996at 3186.448 kb on + strand, within Psest_2996at 3186.449 kb on - strand, within Psest_2996at 3186.449 kb on - strand, within Psest_2996at 3186.449 kb on - strand, within Psest_2996at 3186.449 kb on - strand, within Psest_2996at 3186.456 kb on + strand, within Psest_2996at 3186.456 kb on + strand, within Psest_2996at 3186.527 kb on + strand, within Psest_2996at 3186.527 kb on + strand, within Psest_2996at 3186.527 kb on + strand, within Psest_2996at 3186.527 kb on + strand, within Psest_2996at 3186.527 kb on + strand, within Psest_2996at 3186.527 kb on + strand, within Psest_2996at 3186.527 kb on + strand, within Psest_2996at 3186.527 kb on + strand, within Psest_2996at 3186.528 kb on - strand, within Psest_2996at 3186.528 kb on - strand, within Psest_2996at 3186.528 kb on - strand, within Psest_2996at 3186.528 kb on - strand, within Psest_2996at 3186.528 kb on - strand, within Psest_2996at 3186.531 kb on + strand, within Psest_2996at 3186.531 kb on + strand, within Psest_2996at 3186.531 kb on + strand, within Psest_2996at 3186.531 kb on + strand, within Psest_2996at 3186.531 kb on + strand, within Psest_2996at 3186.531 kb on + strand, within Psest_2996at 3186.532 kb on - strand, within Psest_2996at 3186.532 kb on - strand, within Psest_2996at 3186.532 kb on - strand, within Psest_2996at 3186.532 kb on - strand, within Psest_2996at 3186.532 kb on - strand, within Psest_2996at 3186.733 kb on + strand, within Psest_2996at 3186.733 kb on + strand, within Psest_2996at 3186.733 kb on + strand, within Psest_2996at 3186.734 kb on - strand, within Psest_2996at 3186.761 kb on + strand, within Psest_2996at 3186.762 kb on - strand, within Psest_2996at 3186.762 kb on - strand, within Psest_2996at 3186.762 kb on - strand, within Psest_2996at 3186.762 kb on - strand, within Psest_2996at 3186.763 kb on + strand, within Psest_2996at 3186.763 kb on + strand, within Psest_2996at 3186.763 kb on + strand, within Psest_2996at 3186.763 kb on + strand, within Psest_2996at 3186.763 kb on + strand, within Psest_2996at 3186.763 kb on + strand, within Psest_2996at 3186.763 kb on + strand, within Psest_2996at 3186.763 kb on + strand, within Psest_2996at 3186.763 kb on + strand, within Psest_2996at 3186.763 kb on + strand, within Psest_2996at 3186.763 kb on + strand, within Psest_2996at 3186.763 kb on + strand, within Psest_2996at 3186.764 kb on - strand, within Psest_2996at 3186.764 kb on - strand, within Psest_2996at 3186.764 kb on - strand, within Psest_2996at 3186.764 kb on - strand, within Psest_2996at 3186.764 kb on - strand, within Psest_2996at 3186.764 kb on - strand, within Psest_2996at 3186.764 kb on - strand, within Psest_2996at 3186.764 kb on - strand, within Psest_2996at 3186.764 kb on - strand, within Psest_2996at 3186.764 kb on - strand, within Psest_2996at 3186.764 kb on - strand, within Psest_2996at 3186.764 kb on - strand, within Psest_2996

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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3,184,016 + -0.1
3,184,016 + +1.8
3,184,016 + -0.0
3,184,016 + -2.6
3,184,017 - -1.5
3,184,017 - -1.7
3,184,489 + +0.3
3,184,541 - -2.6
3,184,564 + -0.4
3,184,583 - +1.1
3,184,667 + Psest_2994 0.17 +1.8
3,184,667 + Psest_2994 0.17 +1.7
3,184,667 + Psest_2994 0.17 +0.9
3,184,667 + Psest_2994 0.17 -0.4
3,184,667 + Psest_2994 0.17 +1.2
3,184,667 + Psest_2994 0.17 -1.1
3,184,667 + Psest_2994 0.17 +1.0
3,184,668 - Psest_2994 0.17 -1.4
3,184,668 - Psest_2994 0.17 -0.1
3,184,668 - Psest_2994 0.17 -2.2
3,184,668 - Psest_2994 0.17 -2.0
3,184,668 - Psest_2994 0.17 +0.3
3,184,668 - Psest_2994 0.17 +1.7
3,184,856 + Psest_2994 0.81 -1.1
3,184,857 - Psest_2994 0.81 -1.3
3,184,857 - Psest_2994 0.81 -2.5
3,184,857 - Psest_2994 0.81 +1.0
3,184,862 + Psest_2994 0.83 -0.0
3,184,862 + Psest_2994 0.83 -2.1
3,184,862 + Psest_2994 0.83 -2.2
3,184,862 + Psest_2994 0.83 +0.3
3,184,862 + Psest_2994 0.83 +0.6
3,184,863 - Psest_2994 0.83 +1.6
3,184,863 - Psest_2994 0.83 +0.4
3,184,863 - Psest_2994 0.83 +1.9
3,184,863 - Psest_2994 0.83 -1.7
3,184,863 - Psest_2994 0.83 -1.6
3,184,863 - Psest_2994 0.83 -1.6
3,184,863 - Psest_2994 0.83 -1.6
3,184,863 - Psest_2994 0.83 +0.7
3,184,863 - Psest_2994 0.83 -1.3
3,184,863 - Psest_2994 0.83 -0.0
3,184,863 - Psest_2994 0.83 +2.8
3,184,863 - Psest_2994 0.83 -1.2
3,184,888 - -0.7
3,184,888 - -1.5
3,184,889 + +1.0
3,184,889 + -0.8
3,185,576 - Psest_2995 0.59 -0.0
3,185,922 - -0.9
3,185,956 + -1.2
3,185,957 - -0.2
3,186,085 + -1.1
3,186,085 + +0.4
3,186,085 + +4.2
3,186,085 + -0.2
3,186,085 + -1.5
3,186,085 + -1.3
3,186,085 + +0.3
3,186,085 + -1.8
3,186,085 + +1.0
3,186,085 + +0.5
3,186,085 + -2.8
3,186,085 + -0.4
3,186,085 + -0.9
3,186,085 + +0.6
3,186,085 + +0.3
3,186,085 + +1.4
3,186,086 - -1.1
3,186,087 + -2.0
3,186,087 + +0.5
3,186,087 + -1.9
3,186,087 + -0.7
3,186,087 + -1.1
3,186,087 + +0.3
3,186,087 + -0.4
3,186,087 + +0.3
3,186,087 + +0.3
3,186,087 + -1.0
3,186,087 + -0.7
3,186,087 + -1.5
3,186,087 + -0.4
3,186,088 - -2.6
3,186,088 - -0.9
3,186,088 - -0.2
3,186,088 - -1.1
3,186,088 - +0.0
3,186,088 - -1.3
3,186,088 - -0.2
3,186,088 - -2.1
3,186,088 - -0.2
3,186,088 - -1.2
3,186,088 - -0.7
3,186,088 - -1.6
3,186,088 - -1.2
3,186,088 - -0.4
3,186,088 - +1.2
3,186,088 - -1.5
3,186,088 - +1.0
3,186,088 - -0.6
3,186,088 - +0.2
3,186,088 - -0.4
3,186,088 - -1.3
3,186,089 + +0.1
3,186,089 + -0.6
3,186,089 + -0.3
3,186,090 - -1.1
3,186,090 - +0.2
3,186,090 - -4.1
3,186,139 + -0.2
3,186,276 + Psest_2996 0.12 -1.0
3,186,448 + Psest_2996 0.32 -0.2
3,186,448 + Psest_2996 0.32 -0.7
3,186,448 + Psest_2996 0.32 +0.9
3,186,449 - Psest_2996 0.33 -1.4
3,186,449 - Psest_2996 0.33 +0.3
3,186,449 - Psest_2996 0.33 -0.1
3,186,449 - Psest_2996 0.33 -1.7
3,186,456 + Psest_2996 0.33 -0.7
3,186,456 + Psest_2996 0.33 -1.0
3,186,527 + Psest_2996 0.42 -0.3
3,186,527 + Psest_2996 0.42 -0.5
3,186,527 + Psest_2996 0.42 -0.4
3,186,527 + Psest_2996 0.42 -1.9
3,186,527 + Psest_2996 0.42 -1.0
3,186,527 + Psest_2996 0.42 +3.1
3,186,527 + Psest_2996 0.42 +1.7
3,186,527 + Psest_2996 0.42 +2.0
3,186,528 - Psest_2996 0.42 +0.5
3,186,528 - Psest_2996 0.42 -2.4
3,186,528 - Psest_2996 0.42 -0.6
3,186,528 - Psest_2996 0.42 -1.7
3,186,528 - Psest_2996 0.42 +0.3
3,186,531 + Psest_2996 0.42 -0.8
3,186,531 + Psest_2996 0.42 +0.8
3,186,531 + Psest_2996 0.42 -2.3
3,186,531 + Psest_2996 0.42 -0.4
3,186,531 + Psest_2996 0.42 -1.0
3,186,531 + Psest_2996 0.42 +0.4
3,186,532 - Psest_2996 0.42 +2.6
3,186,532 - Psest_2996 0.42 +2.1
3,186,532 - Psest_2996 0.42 -0.1
3,186,532 - Psest_2996 0.42 -1.1
3,186,532 - Psest_2996 0.42 +1.9
3,186,733 + Psest_2996 0.66 -1.3
3,186,733 + Psest_2996 0.66 +0.8
3,186,733 + Psest_2996 0.66 -1.5
3,186,734 - Psest_2996 0.66 -2.5
3,186,761 + Psest_2996 0.69 +2.3
3,186,762 - Psest_2996 0.70 -1.6
3,186,762 - Psest_2996 0.70 -2.8
3,186,762 - Psest_2996 0.70 -1.1
3,186,762 - Psest_2996 0.70 -1.3
3,186,763 + Psest_2996 0.70 -1.2
3,186,763 + Psest_2996 0.70 +1.9
3,186,763 + Psest_2996 0.70 +1.3
3,186,763 + Psest_2996 0.70 -0.5
3,186,763 + Psest_2996 0.70 -1.2
3,186,763 + Psest_2996 0.70 -0.0
3,186,763 + Psest_2996 0.70 +0.0
3,186,763 + Psest_2996 0.70 +3.6
3,186,763 + Psest_2996 0.70 +0.3
3,186,763 + Psest_2996 0.70 +1.1
3,186,763 + Psest_2996 0.70 +2.6
3,186,763 + Psest_2996 0.70 +2.1
3,186,764 - Psest_2996 0.70 -1.6
3,186,764 - Psest_2996 0.70 -2.0
3,186,764 - Psest_2996 0.70 +0.3
3,186,764 - Psest_2996 0.70 -1.6
3,186,764 - Psest_2996 0.70 +0.6
3,186,764 - Psest_2996 0.70 +0.7
3,186,764 - Psest_2996 0.70 -0.1
3,186,764 - Psest_2996 0.70 +1.7
3,186,764 - Psest_2996 0.70 -2.0
3,186,764 - Psest_2996 0.70 -1.0
3,186,764 - Psest_2996 0.70 +2.0
3,186,764 - Psest_2996 0.70 -0.0

Or see this region's nucleotide sequence