Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2721

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2719 and Psest_2720 are separated by 141 nucleotidesPsest_2720 and Psest_2721 are separated by 127 nucleotidesPsest_2721 and Psest_2722 are separated by 205 nucleotidesPsest_2722 and Psest_2723 are separated by 153 nucleotidesPsest_2723 and Psest_2724 are separated by 34 nucleotides Psest_2719: Psest_2719 - acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family, at 2,907,730 to 2,908,950 _2719 Psest_2720: Psest_2720 - Enoyl-CoA hydratase/carnithine racemase, at 2,909,092 to 2,909,781 _2720 Psest_2721: Psest_2721 - HD-GYP domain, at 2,909,909 to 2,911,198 _2721 Psest_2722: Psest_2722 - tRNA_Ser_GGA, at 2,911,404 to 2,911,493 _2722 Psest_2723: Psest_2723 - Uncharacterized conserved protein, at 2,911,647 to 2,912,072 _2723 Psest_2724: Psest_2724 - hypothetical protein, at 2,912,107 to 2,912,619 _2724 Position (kb) 2909 2910 2911 2912Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2909.027 kb on + strandat 2909.028 kb on - strandat 2909.187 kb on + strand, within Psest_2720at 2909.188 kb on - strand, within Psest_2720at 2909.188 kb on - strand, within Psest_2720at 2909.251 kb on + strand, within Psest_2720at 2909.251 kb on + strand, within Psest_2720at 2909.252 kb on - strand, within Psest_2720at 2909.252 kb on - strand, within Psest_2720at 2909.693 kb on - strand, within Psest_2720at 2909.763 kb on - strandat 2909.763 kb on - strandat 2909.977 kb on + strandat 2910.366 kb on + strand, within Psest_2721at 2910.366 kb on + strand, within Psest_2721at 2910.366 kb on + strand, within Psest_2721at 2910.366 kb on + strand, within Psest_2721at 2910.367 kb on - strand, within Psest_2721at 2910.432 kb on + strand, within Psest_2721at 2910.694 kb on + strand, within Psest_2721at 2910.694 kb on + strand, within Psest_2721at 2910.695 kb on - strand, within Psest_2721at 2910.696 kb on + strand, within Psest_2721at 2910.696 kb on + strand, within Psest_2721at 2910.696 kb on + strand, within Psest_2721at 2910.696 kb on + strand, within Psest_2721at 2910.696 kb on + strand, within Psest_2721at 2910.696 kb on + strand, within Psest_2721at 2910.697 kb on - strand, within Psest_2721at 2910.697 kb on - strand, within Psest_2721at 2910.697 kb on - strand, within Psest_2721at 2910.697 kb on - strand, within Psest_2721at 2910.904 kb on - strand, within Psest_2721at 2910.907 kb on + strand, within Psest_2721at 2910.907 kb on + strand, within Psest_2721at 2910.907 kb on + strand, within Psest_2721at 2910.908 kb on - strand, within Psest_2721at 2910.908 kb on - strand, within Psest_2721at 2910.908 kb on - strand, within Psest_2721at 2910.908 kb on - strand, within Psest_2721at 2910.993 kb on + strand, within Psest_2721at 2910.993 kb on + strand, within Psest_2721at 2910.993 kb on + strand, within Psest_2721at 2910.993 kb on + strand, within Psest_2721at 2910.993 kb on + strand, within Psest_2721at 2910.993 kb on + strand, within Psest_2721at 2910.993 kb on + strand, within Psest_2721at 2910.993 kb on + strand, within Psest_2721at 2910.993 kb on + strand, within Psest_2721at 2910.993 kb on + strand, within Psest_2721at 2910.993 kb on + strand, within Psest_2721at 2910.993 kb on + strand, within Psest_2721at 2910.994 kb on - strand, within Psest_2721at 2910.994 kb on - strand, within Psest_2721at 2910.994 kb on - strand, within Psest_2721at 2910.994 kb on - strand, within Psest_2721at 2910.994 kb on - strand, within Psest_2721at 2910.994 kb on - strand, within Psest_2721at 2910.994 kb on - strand, within Psest_2721at 2910.994 kb on - strand, within Psest_2721at 2910.994 kb on - strand, within Psest_2721at 2910.994 kb on - strand, within Psest_2721at 2910.994 kb on - strand, within Psest_2721at 2910.999 kb on + strand, within Psest_2721at 2910.999 kb on + strand, within Psest_2721at 2910.999 kb on + strand, within Psest_2721at 2910.999 kb on + strand, within Psest_2721at 2911.000 kb on - strand, within Psest_2721at 2911.000 kb on - strand, within Psest_2721at 2911.000 kb on - strand, within Psest_2721at 2911.000 kb on - strand, within Psest_2721at 2911.000 kb on - strand, within Psest_2721at 2911.000 kb on - strand, within Psest_2721at 2911.000 kb on - strand, within Psest_2721at 2911.000 kb on - strand, within Psest_2721at 2911.000 kb on - strand, within Psest_2721at 2911.021 kb on + strand, within Psest_2721at 2911.021 kb on + strand, within Psest_2721at 2911.021 kb on + strand, within Psest_2721at 2911.022 kb on - strand, within Psest_2721at 2911.022 kb on - strand, within Psest_2721at 2911.022 kb on - strand, within Psest_2721at 2911.022 kb on - strand, within Psest_2721at 2911.022 kb on - strand, within Psest_2721at 2911.022 kb on - strand, within Psest_2721at 2911.022 kb on - strand, within Psest_2721at 2911.025 kb on + strand, within Psest_2721at 2911.025 kb on + strand, within Psest_2721at 2911.025 kb on + strand, within Psest_2721at 2911.025 kb on + strand, within Psest_2721at 2911.025 kb on + strand, within Psest_2721at 2911.025 kb on + strand, within Psest_2721at 2911.025 kb on + strand, within Psest_2721at 2911.026 kb on - strand, within Psest_2721at 2911.026 kb on - strand, within Psest_2721at 2911.026 kb on - strand, within Psest_2721at 2911.026 kb on - strand, within Psest_2721at 2911.026 kb on - strand, within Psest_2721at 2911.026 kb on - strand, within Psest_2721at 2911.026 kb on - strand, within Psest_2721at 2911.026 kb on - strand, within Psest_2721at 2911.026 kb on - strand, within Psest_2721at 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.104 kb on + strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.105 kb on - strandat 2911.109 kb on - strandat 2911.312 kb on + strandat 2911.494 kb on + strandat 2911.548 kb on + strandat 2911.571 kb on + strandat 2911.571 kb on + strandat 2911.571 kb on + strandat 2911.571 kb on + strandat 2911.571 kb on + strandat 2911.571 kb on + strandat 2911.607 kb on + strandat 2911.659 kb on + strandat 2911.660 kb on - strandat 2911.660 kb on - strandat 2911.698 kb on + strand, within Psest_2723at 2911.840 kb on - strand, within Psest_2723at 2911.855 kb on + strand, within Psest_2723at 2911.856 kb on - strand, within Psest_2723at 2911.969 kb on + strand, within Psest_2723at 2911.969 kb on + strand, within Psest_2723at 2911.969 kb on + strand, within Psest_2723at 2911.970 kb on - strand, within Psest_2723at 2911.970 kb on - strand, within Psest_2723at 2911.970 kb on - strand, within Psest_2723at 2912.108 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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2,909,027 + +0.1
2,909,028 - -1.4
2,909,187 + Psest_2720 0.14 -1.4
2,909,188 - Psest_2720 0.14 +0.1
2,909,188 - Psest_2720 0.14 -2.1
2,909,251 + Psest_2720 0.23 +0.2
2,909,251 + Psest_2720 0.23 -1.9
2,909,252 - Psest_2720 0.23 +1.4
2,909,252 - Psest_2720 0.23 +2.0
2,909,693 - Psest_2720 0.87 -2.1
2,909,763 - +0.7
2,909,763 - -0.1
2,909,977 + -2.0
2,910,366 + Psest_2721 0.35 +0.5
2,910,366 + Psest_2721 0.35 -0.6
2,910,366 + Psest_2721 0.35 +1.2
2,910,366 + Psest_2721 0.35 -1.6
2,910,367 - Psest_2721 0.36 -3.4
2,910,432 + Psest_2721 0.41 +0.8
2,910,694 + Psest_2721 0.61 -1.0
2,910,694 + Psest_2721 0.61 -2.3
2,910,695 - Psest_2721 0.61 +0.1
2,910,696 + Psest_2721 0.61 -2.0
2,910,696 + Psest_2721 0.61 -2.2
2,910,696 + Psest_2721 0.61 -1.7
2,910,696 + Psest_2721 0.61 -0.6
2,910,696 + Psest_2721 0.61 -0.2
2,910,696 + Psest_2721 0.61 +0.7
2,910,697 - Psest_2721 0.61 -0.2
2,910,697 - Psest_2721 0.61 +0.2
2,910,697 - Psest_2721 0.61 -1.0
2,910,697 - Psest_2721 0.61 -1.3
2,910,904 - Psest_2721 0.77 +0.8
2,910,907 + Psest_2721 0.77 +1.0
2,910,907 + Psest_2721 0.77 +1.9
2,910,907 + Psest_2721 0.77 -0.9
2,910,908 - Psest_2721 0.77 -2.1
2,910,908 - Psest_2721 0.77 -0.4
2,910,908 - Psest_2721 0.77 +1.0
2,910,908 - Psest_2721 0.77 -0.4
2,910,993 + Psest_2721 0.84 -2.4
2,910,993 + Psest_2721 0.84 -1.4
2,910,993 + Psest_2721 0.84 +1.1
2,910,993 + Psest_2721 0.84 +0.4
2,910,993 + Psest_2721 0.84 -1.6
2,910,993 + Psest_2721 0.84 -2.5
2,910,993 + Psest_2721 0.84 -1.1
2,910,993 + Psest_2721 0.84 -0.5
2,910,993 + Psest_2721 0.84 -3.3
2,910,993 + Psest_2721 0.84 -1.3
2,910,993 + Psest_2721 0.84 -2.5
2,910,993 + Psest_2721 0.84 +0.2
2,910,994 - Psest_2721 0.84 +0.0
2,910,994 - Psest_2721 0.84 +0.1
2,910,994 - Psest_2721 0.84 +2.0
2,910,994 - Psest_2721 0.84 +0.6
2,910,994 - Psest_2721 0.84 +0.7
2,910,994 - Psest_2721 0.84 -0.6
2,910,994 - Psest_2721 0.84 -1.2
2,910,994 - Psest_2721 0.84 -1.1
2,910,994 - Psest_2721 0.84 -0.5
2,910,994 - Psest_2721 0.84 +0.7
2,910,994 - Psest_2721 0.84 +0.7
2,910,999 + Psest_2721 0.84 -2.4
2,910,999 + Psest_2721 0.84 -2.1
2,910,999 + Psest_2721 0.84 -1.0
2,910,999 + Psest_2721 0.84 -0.9
2,911,000 - Psest_2721 0.85 -1.8
2,911,000 - Psest_2721 0.85 +0.4
2,911,000 - Psest_2721 0.85 -0.1
2,911,000 - Psest_2721 0.85 +3.5
2,911,000 - Psest_2721 0.85 -1.1
2,911,000 - Psest_2721 0.85 -0.8
2,911,000 - Psest_2721 0.85 -0.6
2,911,000 - Psest_2721 0.85 +1.9
2,911,000 - Psest_2721 0.85 +0.6
2,911,021 + Psest_2721 0.86 -1.6
2,911,021 + Psest_2721 0.86 -0.5
2,911,021 + Psest_2721 0.86 +0.3
2,911,022 - Psest_2721 0.86 -0.8
2,911,022 - Psest_2721 0.86 -1.7
2,911,022 - Psest_2721 0.86 +0.2
2,911,022 - Psest_2721 0.86 -0.1
2,911,022 - Psest_2721 0.86 +1.8
2,911,022 - Psest_2721 0.86 -1.9
2,911,022 - Psest_2721 0.86 -0.9
2,911,025 + Psest_2721 0.87 -1.3
2,911,025 + Psest_2721 0.87 -1.2
2,911,025 + Psest_2721 0.87 -1.7
2,911,025 + Psest_2721 0.87 +1.0
2,911,025 + Psest_2721 0.87 -1.0
2,911,025 + Psest_2721 0.87 -0.6
2,911,025 + Psest_2721 0.87 -2.1
2,911,026 - Psest_2721 0.87 -0.1
2,911,026 - Psest_2721 0.87 +0.1
2,911,026 - Psest_2721 0.87 -3.5
2,911,026 - Psest_2721 0.87 -1.8
2,911,026 - Psest_2721 0.87 -1.8
2,911,026 - Psest_2721 0.87 -1.1
2,911,026 - Psest_2721 0.87 +2.3
2,911,026 - Psest_2721 0.87 -1.6
2,911,026 - Psest_2721 0.87 -1.3
2,911,104 + -0.8
2,911,104 + -0.7
2,911,104 + -2.3
2,911,104 + -0.8
2,911,104 + -0.7
2,911,104 + +1.8
2,911,104 + -0.0
2,911,104 + -1.1
2,911,104 + -1.8
2,911,104 + -0.9
2,911,104 + -1.3
2,911,104 + +1.5
2,911,104 + -0.5
2,911,104 + +2.3
2,911,104 + +0.7
2,911,104 + -1.8
2,911,104 + -1.5
2,911,104 + +0.0
2,911,104 + +2.1
2,911,104 + -0.4
2,911,104 + +0.5
2,911,104 + -1.6
2,911,104 + -0.1
2,911,104 + -0.3
2,911,104 + -0.9
2,911,104 + -0.9
2,911,104 + -2.0
2,911,104 + -1.4
2,911,104 + +1.0
2,911,104 + +0.7
2,911,104 + +0.4
2,911,104 + -1.9
2,911,104 + -1.5
2,911,104 + -0.3
2,911,104 + -0.6
2,911,104 + +1.0
2,911,104 + +1.3
2,911,105 - -3.2
2,911,105 - -1.4
2,911,105 - -1.4
2,911,105 - -2.0
2,911,105 - -2.0
2,911,105 - +1.0
2,911,105 - -2.9
2,911,105 - -0.5
2,911,105 - -2.4
2,911,105 - +0.4
2,911,105 - -1.5
2,911,105 - -0.4
2,911,105 - +0.1
2,911,105 - +0.6
2,911,105 - +1.8
2,911,105 - -0.5
2,911,105 - -1.6
2,911,105 - +0.6
2,911,105 - +0.2
2,911,105 - -0.2
2,911,105 - +0.7
2,911,105 - -0.2
2,911,105 - -1.5
2,911,105 - -0.1
2,911,105 - +0.7
2,911,105 - -3.6
2,911,105 - -0.9
2,911,105 - +0.8
2,911,105 - +0.2
2,911,105 - +0.2
2,911,105 - +1.6
2,911,105 - +1.0
2,911,105 - +0.3
2,911,105 - -1.3
2,911,105 - +0.4
2,911,105 - +0.6
2,911,105 - +0.8
2,911,105 - -0.3
2,911,105 - +0.6
2,911,105 - -1.4
2,911,105 - +3.1
2,911,105 - -2.7
2,911,105 - -0.1
2,911,105 - -0.8
2,911,105 - -0.3
2,911,105 - -0.7
2,911,105 - +0.5
2,911,109 - +1.4
2,911,312 + +1.6
2,911,494 + -1.9
2,911,548 + -3.3
2,911,571 + +1.0
2,911,571 + -0.8
2,911,571 + +0.3
2,911,571 + -0.9
2,911,571 + +2.6
2,911,571 + +1.4
2,911,607 + -1.4
2,911,659 + -0.1
2,911,660 - +1.5
2,911,660 - -0.4
2,911,698 + Psest_2723 0.12 -1.8
2,911,840 - Psest_2723 0.45 +1.7
2,911,855 + Psest_2723 0.49 -0.6
2,911,856 - Psest_2723 0.49 -2.9
2,911,969 + Psest_2723 0.76 -1.2
2,911,969 + Psest_2723 0.76 -1.1
2,911,969 + Psest_2723 0.76 +0.3
2,911,970 - Psest_2723 0.76 -2.1
2,911,970 - Psest_2723 0.76 -2.4
2,911,970 - Psest_2723 0.76 -0.9
2,912,108 + -2.8

Or see this region's nucleotide sequence