Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c26150

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c26140 and PGA1_c26150 are separated by 592 nucleotidesPGA1_c26150 and PGA1_c26160 are separated by 228 nucleotides PGA1_c26140: PGA1_c26140 - RTX toxins and related Ca2+-binding proteins, at 2,719,004 to 2,722,342 _c26140 PGA1_c26150: PGA1_c26150 - putative ETC complex I subunit, at 2,722,935 to 2,723,246 _c26150 PGA1_c26160: PGA1_c26160 - uvrABC system protein B, at 2,723,475 to 2,725,673 _c26160 Position (kb) 2722 2723 2724Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2721.981 kb on - strand, within PGA1_c26140at 2722.045 kb on + strandat 2722.045 kb on + strandat 2722.045 kb on + strandat 2722.045 kb on + strandat 2722.053 kb on - strandat 2722.055 kb on + strandat 2722.063 kb on - strandat 2722.063 kb on - strandat 2722.063 kb on - strandat 2722.063 kb on - strandat 2722.078 kb on + strandat 2722.089 kb on + strandat 2722.089 kb on + strandat 2722.129 kb on - strandat 2722.225 kb on + strandat 2722.234 kb on + strandat 2722.291 kb on - strandat 2722.317 kb on + strandat 2722.380 kb on - strandat 2722.411 kb on - strandat 2722.539 kb on + strandat 2722.572 kb on + strandat 2722.582 kb on + strandat 2722.611 kb on + strandat 2722.611 kb on + strandat 2722.611 kb on + strandat 2722.611 kb on + strandat 2722.611 kb on + strandat 2722.711 kb on - strandat 2722.742 kb on - strandat 2722.748 kb on - strandat 2722.750 kb on - strandat 2722.766 kb on + strandat 2722.848 kb on + strandat 2722.879 kb on + strandat 2722.887 kb on - strandat 2722.887 kb on - strandat 2722.932 kb on + strandat 2722.932 kb on + strandat 2722.932 kb on + strandat 2722.932 kb on + strandat 2722.932 kb on + strandat 2722.932 kb on + strandat 2722.932 kb on + strandat 2722.940 kb on - strandat 2722.940 kb on - strandat 2722.940 kb on - strandat 2722.940 kb on - strandat 2722.940 kb on - strandat 2722.940 kb on - strandat 2722.940 kb on - strandat 2722.940 kb on - strandat 2722.940 kb on - strandat 2722.940 kb on - strandat 2722.940 kb on - strandat 2722.940 kb on - strandat 2722.940 kb on - strandat 2722.940 kb on - strandat 2723.022 kb on + strand, within PGA1_c26150at 2723.022 kb on + strand, within PGA1_c26150at 2723.111 kb on + strand, within PGA1_c26150at 2723.177 kb on - strand, within PGA1_c26150at 2723.248 kb on + strandat 2723.248 kb on + strandat 2723.256 kb on + strandat 2723.281 kb on - strandat 2723.289 kb on - strandat 2723.297 kb on - strandat 2723.330 kb on + strandat 2723.360 kb on + strandat 2723.361 kb on - strandat 2723.378 kb on + strandat 2723.390 kb on + strandat 2723.409 kb on + strandat 2723.449 kb on - strandat 2723.455 kb on + strandat 2723.457 kb on + strandat 2723.462 kb on + strandat 2723.462 kb on + strandat 2723.478 kb on + strandat 2723.485 kb on - strandat 2723.505 kb on - strandat 2723.515 kb on - strandat 2723.526 kb on + strandat 2723.526 kb on + strandat 2723.526 kb on + strandat 2723.531 kb on + strandat 2723.534 kb on - strandat 2723.539 kb on - strandat 2723.539 kb on - strandat 2723.551 kb on - strandat 2723.600 kb on + strandat 2723.600 kb on + strandat 2723.603 kb on - strandat 2723.608 kb on - strandat 2723.633 kb on + strandat 2723.704 kb on - strand, within PGA1_c26160at 2723.785 kb on - strand, within PGA1_c26160at 2723.805 kb on + strand, within PGA1_c26160at 2723.849 kb on - strand, within PGA1_c26160at 2723.854 kb on - strand, within PGA1_c26160at 2723.972 kb on + strand, within PGA1_c26160at 2723.985 kb on - strand, within PGA1_c26160at 2723.995 kb on + strand, within PGA1_c26160at 2724.000 kb on + strand, within PGA1_c26160at 2724.000 kb on + strand, within PGA1_c26160at 2724.008 kb on - strand, within PGA1_c26160at 2724.008 kb on - strand, within PGA1_c26160at 2724.062 kb on + strand, within PGA1_c26160at 2724.062 kb on + strand, within PGA1_c26160at 2724.132 kb on - strand, within PGA1_c26160at 2724.132 kb on - strand, within PGA1_c26160at 2724.174 kb on - strand, within PGA1_c26160at 2724.217 kb on - strand, within PGA1_c26160at 2724.226 kb on + strand, within PGA1_c26160

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,721,981 - PGA1_c26140 0.89 +0.3
2,722,045 + +0.3
2,722,045 + +2.0
2,722,045 + +0.0
2,722,045 + -0.1
2,722,053 - -1.9
2,722,055 + -0.2
2,722,063 - -0.1
2,722,063 - +1.0
2,722,063 - -1.5
2,722,063 - +0.1
2,722,078 + +0.7
2,722,089 + +0.8
2,722,089 + +0.7
2,722,129 - -2.2
2,722,225 + -0.7
2,722,234 + +1.5
2,722,291 - -0.1
2,722,317 + +0.4
2,722,380 - -0.3
2,722,411 - +0.3
2,722,539 + -0.3
2,722,572 + -0.4
2,722,582 + +1.0
2,722,611 + -2.6
2,722,611 + +0.7
2,722,611 + +0.6
2,722,611 + -1.8
2,722,611 + +1.0
2,722,711 - -1.7
2,722,742 - -0.3
2,722,748 - -0.5
2,722,750 - +1.6
2,722,766 + -0.6
2,722,848 + -0.1
2,722,879 + -0.9
2,722,887 - -2.9
2,722,887 - -0.7
2,722,932 + -0.8
2,722,932 + +1.2
2,722,932 + -0.6
2,722,932 + -1.9
2,722,932 + +0.7
2,722,932 + -0.6
2,722,932 + -0.5
2,722,940 - -0.5
2,722,940 - -0.6
2,722,940 - +1.1
2,722,940 - -2.4
2,722,940 - +0.5
2,722,940 - -0.8
2,722,940 - -0.5
2,722,940 - +1.2
2,722,940 - +0.2
2,722,940 - +0.6
2,722,940 - +1.0
2,722,940 - -0.8
2,722,940 - -1.0
2,722,940 - +0.9
2,723,022 + PGA1_c26150 0.28 -0.0
2,723,022 + PGA1_c26150 0.28 -1.8
2,723,111 + PGA1_c26150 0.56 -1.9
2,723,177 - PGA1_c26150 0.78 -0.6
2,723,248 + -0.1
2,723,248 + -1.9
2,723,256 + +1.9
2,723,281 - +0.4
2,723,289 - +0.5
2,723,297 - -0.6
2,723,330 + -0.6
2,723,360 + +0.6
2,723,361 - +0.9
2,723,378 + +0.5
2,723,390 + +0.4
2,723,409 + -0.7
2,723,449 - +1.0
2,723,455 + +0.1
2,723,457 + +0.4
2,723,462 + +0.2
2,723,462 + +1.5
2,723,478 + +0.4
2,723,485 - -0.2
2,723,505 - +0.2
2,723,515 - -1.0
2,723,526 + +0.3
2,723,526 + -0.7
2,723,526 + +0.3
2,723,531 + -1.9
2,723,534 - -1.5
2,723,539 - +0.5
2,723,539 - +0.6
2,723,551 - -0.6
2,723,600 + +0.9
2,723,600 + -0.5
2,723,603 - +1.5
2,723,608 - -0.5
2,723,633 + +0.8
2,723,704 - PGA1_c26160 0.10 +1.0
2,723,785 - PGA1_c26160 0.14 +0.9
2,723,805 + PGA1_c26160 0.15 +0.2
2,723,849 - PGA1_c26160 0.17 +0.8
2,723,854 - PGA1_c26160 0.17 -0.3
2,723,972 + PGA1_c26160 0.23 +0.2
2,723,985 - PGA1_c26160 0.23 +1.0
2,723,995 + PGA1_c26160 0.24 -0.3
2,724,000 + PGA1_c26160 0.24 +0.2
2,724,000 + PGA1_c26160 0.24 +0.4
2,724,008 - PGA1_c26160 0.24 -0.4
2,724,008 - PGA1_c26160 0.24 -0.4
2,724,062 + PGA1_c26160 0.27 +1.3
2,724,062 + PGA1_c26160 0.27 +0.1
2,724,132 - PGA1_c26160 0.30 +0.1
2,724,132 - PGA1_c26160 0.30 -0.2
2,724,174 - PGA1_c26160 0.32 +1.7
2,724,217 - PGA1_c26160 0.34 +1.2
2,724,226 + PGA1_c26160 0.34 -0.1

Or see this region's nucleotide sequence