Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2525

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2524 and Psest_2525 are separated by 13 nucleotidesPsest_2525 and Psest_2526 are separated by 92 nucleotides Psest_2524: Psest_2524 - cytochrome c oxidase, cbb3-type, subunit I, at 2,704,456 to 2,705,880 _2524 Psest_2525: Psest_2525 - cytochrome c oxidase, cbb3-type, subunit II, at 2,705,894 to 2,706,505 _2525 Psest_2526: Psest_2526 - cytochrome c oxidase, cbb3-type, subunit III, at 2,706,598 to 2,707,533 _2526 Position (kb) 2705 2706 2707Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2704.927 kb on + strand, within Psest_2524at 2704.927 kb on + strand, within Psest_2524at 2704.927 kb on + strand, within Psest_2524at 2704.927 kb on + strand, within Psest_2524at 2704.928 kb on - strand, within Psest_2524at 2704.928 kb on - strand, within Psest_2524at 2705.024 kb on - strand, within Psest_2524at 2705.122 kb on + strand, within Psest_2524at 2705.122 kb on + strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.125 kb on + strand, within Psest_2524at 2705.125 kb on + strand, within Psest_2524at 2705.126 kb on - strand, within Psest_2524at 2705.159 kb on - strand, within Psest_2524at 2705.165 kb on - strand, within Psest_2524at 2705.207 kb on - strand, within Psest_2524at 2705.237 kb on - strand, within Psest_2524at 2705.492 kb on + strand, within Psest_2524at 2705.492 kb on + strand, within Psest_2524at 2705.543 kb on - strand, within Psest_2524at 2705.638 kb on + strand, within Psest_2524at 2705.638 kb on + strand, within Psest_2524at 2705.639 kb on - strand, within Psest_2524at 2705.812 kb on + strandat 2705.813 kb on - strandat 2705.887 kb on + strandat 2705.887 kb on + strandat 2705.888 kb on - strandat 2705.891 kb on + strandat 2706.071 kb on + strand, within Psest_2525at 2706.071 kb on + strand, within Psest_2525at 2706.071 kb on + strand, within Psest_2525at 2706.149 kb on + strand, within Psest_2525at 2706.149 kb on + strand, within Psest_2525at 2706.149 kb on + strand, within Psest_2525at 2706.149 kb on + strand, within Psest_2525at 2706.149 kb on + strand, within Psest_2525at 2706.206 kb on - strand, within Psest_2525at 2706.465 kb on - strandat 2706.592 kb on + strandat 2706.592 kb on + strandat 2706.593 kb on - strandat 2706.619 kb on + strandat 2706.620 kb on - strandat 2706.620 kb on - strandat 2706.745 kb on + strand, within Psest_2526at 2706.745 kb on + strand, within Psest_2526at 2706.925 kb on + strand, within Psest_2526at 2706.946 kb on + strand, within Psest_2526at 2706.946 kb on + strand, within Psest_2526at 2707.021 kb on + strand, within Psest_2526at 2707.021 kb on + strand, within Psest_2526at 2707.021 kb on + strand, within Psest_2526at 2707.022 kb on - strand, within Psest_2526at 2707.282 kb on + strand, within Psest_2526at 2707.282 kb on + strand, within Psest_2526at 2707.282 kb on + strand, within Psest_2526at 2707.282 kb on + strand, within Psest_2526at 2707.282 kb on + strand, within Psest_2526at 2707.282 kb on + strand, within Psest_2526at 2707.283 kb on - strand, within Psest_2526at 2707.283 kb on - strand, within Psest_2526at 2707.376 kb on - strand, within Psest_2526at 2707.376 kb on - strand, within Psest_2526at 2707.450 kb on + strandat 2707.450 kb on + strandat 2707.451 kb on - strandat 2707.486 kb on + strandat 2707.487 kb on - strandat 2707.492 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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2,704,927 + Psest_2524 0.33 -0.6
2,704,927 + Psest_2524 0.33 -1.2
2,704,927 + Psest_2524 0.33 -1.1
2,704,927 + Psest_2524 0.33 -0.2
2,704,928 - Psest_2524 0.33 -1.2
2,704,928 - Psest_2524 0.33 -0.6
2,705,024 - Psest_2524 0.40 -1.2
2,705,122 + Psest_2524 0.47 +1.6
2,705,122 + Psest_2524 0.47 -2.1
2,705,123 - Psest_2524 0.47 +0.5
2,705,123 - Psest_2524 0.47 -3.4
2,705,123 - Psest_2524 0.47 -1.0
2,705,123 - Psest_2524 0.47 -0.2
2,705,123 - Psest_2524 0.47 -0.2
2,705,123 - Psest_2524 0.47 -1.8
2,705,123 - Psest_2524 0.47 -0.9
2,705,123 - Psest_2524 0.47 +0.0
2,705,123 - Psest_2524 0.47 +1.2
2,705,123 - Psest_2524 0.47 +0.6
2,705,125 + Psest_2524 0.47 -0.5
2,705,125 + Psest_2524 0.47 -0.2
2,705,126 - Psest_2524 0.47 -2.2
2,705,159 - Psest_2524 0.49 -0.7
2,705,165 - Psest_2524 0.50 +0.8
2,705,207 - Psest_2524 0.53 +0.4
2,705,237 - Psest_2524 0.55 +1.0
2,705,492 + Psest_2524 0.73 -0.2
2,705,492 + Psest_2524 0.73 -1.6
2,705,543 - Psest_2524 0.76 -0.7
2,705,638 + Psest_2524 0.83 +1.1
2,705,638 + Psest_2524 0.83 -1.4
2,705,639 - Psest_2524 0.83 -2.4
2,705,812 + -2.1
2,705,813 - -1.5
2,705,887 + -2.8
2,705,887 + -2.1
2,705,888 - -2.1
2,705,891 + -2.0
2,706,071 + Psest_2525 0.29 -2.6
2,706,071 + Psest_2525 0.29 -0.6
2,706,071 + Psest_2525 0.29 -1.2
2,706,149 + Psest_2525 0.42 +0.6
2,706,149 + Psest_2525 0.42 +0.3
2,706,149 + Psest_2525 0.42 -1.4
2,706,149 + Psest_2525 0.42 -1.7
2,706,149 + Psest_2525 0.42 -2.9
2,706,206 - Psest_2525 0.51 -1.0
2,706,465 - +0.6
2,706,592 + -1.3
2,706,592 + -0.7
2,706,593 - -2.9
2,706,619 + -2.5
2,706,620 - -0.4
2,706,620 - +0.1
2,706,745 + Psest_2526 0.16 +0.6
2,706,745 + Psest_2526 0.16 -1.1
2,706,925 + Psest_2526 0.35 -0.9
2,706,946 + Psest_2526 0.37 +0.3
2,706,946 + Psest_2526 0.37 -2.4
2,707,021 + Psest_2526 0.45 -3.9
2,707,021 + Psest_2526 0.45 -2.3
2,707,021 + Psest_2526 0.45 -1.2
2,707,022 - Psest_2526 0.45 -2.8
2,707,282 + Psest_2526 0.73 -2.5
2,707,282 + Psest_2526 0.73 -0.1
2,707,282 + Psest_2526 0.73 -2.5
2,707,282 + Psest_2526 0.73 -1.6
2,707,282 + Psest_2526 0.73 -1.8
2,707,282 + Psest_2526 0.73 -1.8
2,707,283 - Psest_2526 0.73 +0.1
2,707,283 - Psest_2526 0.73 -0.8
2,707,376 - Psest_2526 0.83 +0.0
2,707,376 - Psest_2526 0.83 -2.5
2,707,450 + -1.0
2,707,450 + -3.4
2,707,451 - -1.0
2,707,486 + -1.3
2,707,487 - -0.8
2,707,492 + -2.7

Or see this region's nucleotide sequence