Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02520 and PGA1_c02530 overlap by 4 nucleotides PGA1_c02530 and PGA1_c02540 are separated by 301 nucleotides PGA1_c02540 and PGA1_c02550 are separated by 11 nucleotides PGA1_c02550 and PGA1_c02560 overlap by 1 nucleotides
PGA1_c02520: PGA1_c02520 - copper-transporting P-type ATPase ActP, at 236,064 to 238,580
_c02520
PGA1_c02530: PGA1_c02530 - HTH-type transcriptional regulator, at 238,577 to 238,981
_c02530
PGA1_c02540: PGA1_c02540 - Uncharacterized conserved protein, at 239,283 to 240,119
_c02540
PGA1_c02550: PGA1_c02550 - protocatechuate 3,4-dioxygenase alpha chain, at 240,131 to 240,775
_c02550
PGA1_c02560: PGA1_c02560 - protocatechuate 3,4-dioxygenase beta chain, at 240,775 to 241,500
_c02560
Position (kb) 239
240
241 Strain fitness (log2 ratio) -2
-1
0
1
2 at 238.284 kb on - strand, within PGA1_c02520 at 238.350 kb on + strand at 238.401 kb on + strand at 238.407 kb on - strand at 238.450 kb on - strand at 238.462 kb on + strand at 238.495 kb on + strand at 238.495 kb on + strand at 238.495 kb on + strand at 238.500 kb on - strand at 238.531 kb on - strand at 238.531 kb on - strand at 238.562 kb on - strand at 238.574 kb on + strand at 238.582 kb on + strand at 238.592 kb on - strand at 238.621 kb on + strand, within PGA1_c02530 at 238.621 kb on + strand, within PGA1_c02530 at 238.623 kb on - strand, within PGA1_c02530 at 238.646 kb on + strand, within PGA1_c02530 at 238.649 kb on - strand, within PGA1_c02530 at 238.650 kb on - strand, within PGA1_c02530 at 238.651 kb on + strand, within PGA1_c02530 at 238.651 kb on + strand, within PGA1_c02530 at 238.651 kb on + strand, within PGA1_c02530 at 238.696 kb on + strand, within PGA1_c02530 at 238.703 kb on - strand, within PGA1_c02530 at 238.708 kb on - strand, within PGA1_c02530 at 238.732 kb on - strand, within PGA1_c02530 at 238.803 kb on + strand, within PGA1_c02530 at 238.895 kb on + strand, within PGA1_c02530 at 238.896 kb on - strand, within PGA1_c02530 at 238.903 kb on - strand, within PGA1_c02530 at 238.913 kb on + strand, within PGA1_c02530 at 238.913 kb on + strand, within PGA1_c02530 at 238.913 kb on + strand, within PGA1_c02530 at 238.913 kb on + strand, within PGA1_c02530 at 238.913 kb on + strand, within PGA1_c02530 at 238.921 kb on - strand, within PGA1_c02530 at 238.921 kb on - strand, within PGA1_c02530 at 238.922 kb on + strand, within PGA1_c02530 at 238.932 kb on + strand, within PGA1_c02530 at 238.932 kb on + strand, within PGA1_c02530 at 238.940 kb on - strand, within PGA1_c02530 at 239.033 kb on - strand at 239.033 kb on - strand at 239.033 kb on - strand at 239.033 kb on - strand at 239.053 kb on + strand at 239.071 kb on + strand at 239.071 kb on + strand at 239.073 kb on + strand at 239.079 kb on - strand at 239.079 kb on - strand at 239.079 kb on - strand at 239.080 kb on - strand at 239.081 kb on - strand at 239.217 kb on - strand at 239.217 kb on - strand at 239.242 kb on - strand at 239.259 kb on - strand at 239.259 kb on - strand at 239.264 kb on - strand at 239.271 kb on - strand at 239.313 kb on + strand at 239.331 kb on + strand at 239.371 kb on - strand, within PGA1_c02540 at 239.371 kb on - strand, within PGA1_c02540 at 239.374 kb on + strand, within PGA1_c02540 at 239.548 kb on + strand, within PGA1_c02540 at 239.548 kb on + strand, within PGA1_c02540 at 239.637 kb on - strand, within PGA1_c02540 at 239.724 kb on - strand, within PGA1_c02540 at 239.729 kb on - strand, within PGA1_c02540 at 239.807 kb on - strand, within PGA1_c02540 at 239.866 kb on + strand, within PGA1_c02540 at 239.866 kb on + strand, within PGA1_c02540 at 239.883 kb on + strand, within PGA1_c02540 at 239.883 kb on + strand, within PGA1_c02540 at 239.888 kb on + strand, within PGA1_c02540 at 239.898 kb on + strand, within PGA1_c02540 at 239.906 kb on - strand, within PGA1_c02540 at 239.974 kb on - strand, within PGA1_c02540 at 240.014 kb on - strand, within PGA1_c02540 at 240.019 kb on + strand, within PGA1_c02540 at 240.032 kb on + strand, within PGA1_c02540 at 240.069 kb on + strand at 240.074 kb on + strand at 240.074 kb on + strand at 240.074 kb on + strand at 240.074 kb on + strand at 240.074 kb on + strand at 240.074 kb on + strand at 240.074 kb on + strand at 240.074 kb on + strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.117 kb on - strand at 240.154 kb on + strand at 240.164 kb on + strand at 240.196 kb on - strand, within PGA1_c02550 at 240.196 kb on - strand, within PGA1_c02550 at 240.197 kb on - strand, within PGA1_c02550 at 240.219 kb on + strand, within PGA1_c02550 at 240.237 kb on - strand, within PGA1_c02550 at 240.241 kb on + strand, within PGA1_c02550 at 240.244 kb on - strand, within PGA1_c02550 at 240.246 kb on + strand, within PGA1_c02550 at 240.254 kb on - strand, within PGA1_c02550 at 240.296 kb on - strand, within PGA1_c02550 at 240.320 kb on + strand, within PGA1_c02550 at 240.337 kb on + strand, within PGA1_c02550 at 240.337 kb on + strand, within PGA1_c02550 at 240.343 kb on + strand, within PGA1_c02550 at 240.343 kb on + strand, within PGA1_c02550 at 240.345 kb on - strand, within PGA1_c02550 at 240.351 kb on - strand, within PGA1_c02550 at 240.351 kb on - strand, within PGA1_c02550 at 240.363 kb on + strand, within PGA1_c02550 at 240.363 kb on + strand, within PGA1_c02550 at 240.565 kb on + strand, within PGA1_c02550 at 240.605 kb on - strand, within PGA1_c02550 at 240.613 kb on + strand, within PGA1_c02550 at 240.613 kb on - strand, within PGA1_c02550 at 240.643 kb on - strand, within PGA1_c02550 at 240.650 kb on - strand, within PGA1_c02550 at 240.665 kb on + strand, within PGA1_c02550 at 240.700 kb on - strand, within PGA1_c02550 at 240.720 kb on - strand at 240.736 kb on + strand at 240.736 kb on + strand at 240.737 kb on - strand at 240.744 kb on - strand at 240.786 kb on - strand at 240.812 kb on - strand at 240.892 kb on + strand, within PGA1_c02560 at 240.897 kb on + strand, within PGA1_c02560 at 240.903 kb on - strand, within PGA1_c02560 at 240.938 kb on - strand, within PGA1_c02560 at 240.973 kb on - strand, within PGA1_c02560 at 240.975 kb on + strand, within PGA1_c02560 at 240.983 kb on - strand, within PGA1_c02560 at 240.990 kb on + strand, within PGA1_c02560 at 240.998 kb on - strand, within PGA1_c02560 at 240.998 kb on - strand, within PGA1_c02560 at 241.036 kb on - strand, within PGA1_c02560 at 241.042 kb on + strand, within PGA1_c02560 at 241.061 kb on + strand, within PGA1_c02560 at 241.061 kb on + strand, within PGA1_c02560 at 241.061 kb on + strand, within PGA1_c02560 at 241.067 kb on + strand, within PGA1_c02560 at 241.067 kb on + strand, within PGA1_c02560 at 241.069 kb on - strand, within PGA1_c02560 at 241.069 kb on - strand, within PGA1_c02560 at 241.069 kb on - strand, within PGA1_c02560 at 241.069 kb on - strand, within PGA1_c02560 at 241.069 kb on - strand, within PGA1_c02560 at 241.075 kb on - strand, within PGA1_c02560 at 241.082 kb on - strand, within PGA1_c02560 at 241.082 kb on - strand, within PGA1_c02560 at 241.112 kb on + strand, within PGA1_c02560 at 241.112 kb on + strand, within PGA1_c02560 at 241.119 kb on + strand, within PGA1_c02560
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 238,284 - PGA1_c02520 0.88 +0.5 238,350 + +1.4 238,401 + -1.1 238,407 - -0.5 238,450 - -0.7 238,462 + -0.2 238,495 + -1.7 238,495 + -0.6 238,495 + +0.4 238,500 - -0.5 238,531 - -0.7 238,531 - -0.3 238,562 - +0.1 238,574 + +0.1 238,582 + -1.4 238,592 - +1.4 238,621 + PGA1_c02530 0.11 -0.8 238,621 + PGA1_c02530 0.11 +1.3 238,623 - PGA1_c02530 0.11 -0.9 238,646 + PGA1_c02530 0.17 -1.0 238,649 - PGA1_c02530 0.18 -0.6 238,650 - PGA1_c02530 0.18 -0.2 238,651 + PGA1_c02530 0.18 +0.2 238,651 + PGA1_c02530 0.18 +0.7 238,651 + PGA1_c02530 0.18 +1.9 238,696 + PGA1_c02530 0.29 -0.6 238,703 - PGA1_c02530 0.31 -0.4 238,708 - PGA1_c02530 0.32 +0.7 238,732 - PGA1_c02530 0.38 +0.1 238,803 + PGA1_c02530 0.56 +0.2 238,895 + PGA1_c02530 0.79 +0.6 238,896 - PGA1_c02530 0.79 -1.2 238,903 - PGA1_c02530 0.80 -1.2 238,913 + PGA1_c02530 0.83 -1.8 238,913 + PGA1_c02530 0.83 +1.0 238,913 + PGA1_c02530 0.83 +2.1 238,913 + PGA1_c02530 0.83 +0.7 238,913 + PGA1_c02530 0.83 -2.7 238,921 - PGA1_c02530 0.85 -1.1 238,921 - PGA1_c02530 0.85 -0.2 238,922 + PGA1_c02530 0.85 -1.0 238,932 + PGA1_c02530 0.88 +0.0 238,932 + PGA1_c02530 0.88 +1.4 238,940 - PGA1_c02530 0.90 +0.7 239,033 - -0.6 239,033 - +1.0 239,033 - -1.5 239,033 - +0.6 239,053 + +0.7 239,071 + -0.4 239,071 + -0.6 239,073 + +0.1 239,079 - +0.7 239,079 - -0.7 239,079 - -1.9 239,080 - -0.5 239,081 - +0.2 239,217 - +0.3 239,217 - -2.3 239,242 - +0.4 239,259 - -1.1 239,259 - -0.4 239,264 - +0.2 239,271 - -0.3 239,313 + -0.3 239,331 + +0.3 239,371 - PGA1_c02540 0.11 +0.3 239,371 - PGA1_c02540 0.11 -1.1 239,374 + PGA1_c02540 0.11 +1.0 239,548 + PGA1_c02540 0.32 -0.3 239,548 + PGA1_c02540 0.32 -0.7 239,637 - PGA1_c02540 0.42 +0.3 239,724 - PGA1_c02540 0.53 +0.4 239,729 - PGA1_c02540 0.53 -0.2 239,807 - PGA1_c02540 0.63 -1.0 239,866 + PGA1_c02540 0.70 -0.2 239,866 + PGA1_c02540 0.70 +0.4 239,883 + PGA1_c02540 0.72 -0.4 239,883 + PGA1_c02540 0.72 -0.4 239,888 + PGA1_c02540 0.72 -0.8 239,898 + PGA1_c02540 0.73 -2.7 239,906 - PGA1_c02540 0.74 -0.4 239,974 - PGA1_c02540 0.83 -0.7 240,014 - PGA1_c02540 0.87 +0.5 240,019 + PGA1_c02540 0.88 +1.7 240,032 + PGA1_c02540 0.89 +0.8 240,069 + -2.1 240,074 + +0.2 240,074 + +1.1 240,074 + +0.4 240,074 + +0.9 240,074 + -1.4 240,074 + -1.7 240,074 + -1.0 240,074 + +0.8 240,082 - +1.4 240,082 - +0.4 240,082 - -0.1 240,082 - -0.6 240,082 - -0.0 240,082 - +0.5 240,082 - -1.3 240,082 - +0.2 240,082 - -0.3 240,117 - -1.0 240,154 + +0.6 240,164 + -0.6 240,196 - PGA1_c02550 0.10 +0.4 240,196 - PGA1_c02550 0.10 +0.6 240,197 - PGA1_c02550 0.10 -0.6 240,219 + PGA1_c02550 0.14 +1.0 240,237 - PGA1_c02550 0.16 -0.5 240,241 + PGA1_c02550 0.17 -1.6 240,244 - PGA1_c02550 0.18 +1.1 240,246 + PGA1_c02550 0.18 +1.2 240,254 - PGA1_c02550 0.19 -0.3 240,296 - PGA1_c02550 0.26 -0.9 240,320 + PGA1_c02550 0.29 +0.6 240,337 + PGA1_c02550 0.32 +0.4 240,337 + PGA1_c02550 0.32 -0.0 240,343 + PGA1_c02550 0.33 -1.2 240,343 + PGA1_c02550 0.33 -0.6 240,345 - PGA1_c02550 0.33 +0.3 240,351 - PGA1_c02550 0.34 -0.2 240,351 - PGA1_c02550 0.34 -0.5 240,363 + PGA1_c02550 0.36 +1.2 240,363 + PGA1_c02550 0.36 +0.8 240,565 + PGA1_c02550 0.67 -0.4 240,605 - PGA1_c02550 0.73 -0.0 240,613 + PGA1_c02550 0.75 +0.4 240,613 - PGA1_c02550 0.75 +0.6 240,643 - PGA1_c02550 0.79 +1.4 240,650 - PGA1_c02550 0.80 -0.8 240,665 + PGA1_c02550 0.83 -0.7 240,700 - PGA1_c02550 0.88 +0.8 240,720 - +1.2 240,736 + +0.3 240,736 + -0.0 240,737 - -0.4 240,744 - +0.4 240,786 - -0.4 240,812 - +0.8 240,892 + PGA1_c02560 0.16 -0.8 240,897 + PGA1_c02560 0.17 -0.4 240,903 - PGA1_c02560 0.18 -0.5 240,938 - PGA1_c02560 0.22 -0.9 240,973 - PGA1_c02560 0.27 +0.2 240,975 + PGA1_c02560 0.28 +0.9 240,983 - PGA1_c02560 0.29 +0.0 240,990 + PGA1_c02560 0.30 +0.5 240,998 - PGA1_c02560 0.31 -1.5 240,998 - PGA1_c02560 0.31 +0.7 241,036 - PGA1_c02560 0.36 +1.4 241,042 + PGA1_c02560 0.37 +0.4 241,061 + PGA1_c02560 0.39 +1.0 241,061 + PGA1_c02560 0.39 +1.0 241,061 + PGA1_c02560 0.39 +0.7 241,067 + PGA1_c02560 0.40 +0.4 241,067 + PGA1_c02560 0.40 +0.1 241,069 - PGA1_c02560 0.40 +0.8 241,069 - PGA1_c02560 0.40 +1.8 241,069 - PGA1_c02560 0.40 +0.4 241,069 - PGA1_c02560 0.40 +1.1 241,069 - PGA1_c02560 0.40 +1.4 241,075 - PGA1_c02560 0.41 +1.9 241,082 - PGA1_c02560 0.42 +0.7 241,082 - PGA1_c02560 0.42 +0.8 241,112 + PGA1_c02560 0.46 +0.1 241,112 + PGA1_c02560 0.46 +0.2 241,119 + PGA1_c02560 0.47 +0.8
Or see this region's nucleotide sequence