Experiment: Chlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2228 and Psest_2229 are separated by 400 nucleotides Psest_2229 and Psest_2230 are separated by 42 nucleotides Psest_2230 and Psest_2231 are separated by 70 nucleotides Psest_2231 and Psest_2232 are separated by 34 nucleotides
Psest_2228: Psest_2228 - hypothetical protein, at 2,377,663 to 2,378,958
_2228
Psest_2229: Psest_2229 - Uncharacterized protein conserved in bacteria, at 2,379,359 to 2,379,862
_2229
Psest_2230: Psest_2230 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes, at 2,379,905 to 2,381,263
_2230
Psest_2231: Psest_2231 - Lactoylglutathione lyase and related lyases, at 2,381,334 to 2,381,756
_2231
Psest_2232: Psest_2232 - UTP-glucose-1-phosphate uridylyltransferase, at 2,381,791 to 2,382,630
_2232
Position (kb)
2379
2380
2381
2382 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2378.929 kb on + strand at 2378.930 kb on - strand at 2378.930 kb on - strand at 2378.958 kb on + strand at 2378.958 kb on + strand at 2378.958 kb on + strand at 2378.973 kb on + strand at 2378.974 kb on - strand at 2378.975 kb on + strand at 2378.975 kb on + strand at 2378.975 kb on + strand at 2378.975 kb on + strand at 2378.975 kb on + strand at 2378.975 kb on + strand at 2379.066 kb on + strand at 2379.067 kb on - strand at 2379.086 kb on + strand at 2379.086 kb on + strand at 2379.200 kb on + strand at 2379.200 kb on + strand at 2379.201 kb on - strand at 2379.201 kb on - strand at 2379.202 kb on + strand at 2379.202 kb on + strand at 2379.202 kb on + strand at 2379.202 kb on + strand at 2379.202 kb on + strand at 2379.202 kb on + strand at 2379.202 kb on + strand at 2379.202 kb on + strand at 2379.202 kb on + strand at 2379.202 kb on + strand at 2379.202 kb on + strand at 2379.202 kb on + strand at 2379.203 kb on - strand at 2379.203 kb on - strand at 2379.203 kb on - strand at 2379.203 kb on - strand at 2379.203 kb on - strand at 2379.203 kb on - strand at 2379.203 kb on - strand at 2379.203 kb on - strand at 2379.287 kb on + strand at 2379.288 kb on - strand at 2379.323 kb on - strand at 2379.326 kb on - strand at 2379.326 kb on - strand at 2379.527 kb on + strand, within Psest_2229 at 2379.711 kb on + strand, within Psest_2229 at 2379.711 kb on + strand, within Psest_2229 at 2379.712 kb on - strand, within Psest_2229 at 2379.712 kb on - strand, within Psest_2229 at 2379.712 kb on - strand, within Psest_2229 at 2379.907 kb on - strand at 2379.992 kb on - strand at 2380.025 kb on + strand at 2380.025 kb on + strand at 2380.026 kb on - strand at 2380.026 kb on - strand at 2380.026 kb on - strand at 2380.055 kb on - strand, within Psest_2230 at 2380.176 kb on + strand, within Psest_2230 at 2380.261 kb on - strand, within Psest_2230 at 2380.737 kb on + strand, within Psest_2230 at 2380.737 kb on + strand, within Psest_2230 at 2380.782 kb on + strand, within Psest_2230 at 2380.783 kb on - strand, within Psest_2230 at 2380.783 kb on - strand, within Psest_2230 at 2380.801 kb on + strand, within Psest_2230 at 2380.801 kb on + strand, within Psest_2230 at 2380.879 kb on - strand, within Psest_2230 at 2380.971 kb on + strand, within Psest_2230 at 2380.972 kb on - strand, within Psest_2230 at 2380.972 kb on - strand, within Psest_2230 at 2381.021 kb on - strand, within Psest_2230 at 2381.021 kb on - strand, within Psest_2230 at 2381.021 kb on - strand, within Psest_2230 at 2381.088 kb on + strand, within Psest_2230 at 2381.101 kb on - strand, within Psest_2230 at 2381.243 kb on + strand at 2381.244 kb on - strand at 2381.256 kb on + strand at 2381.265 kb on + strand at 2381.265 kb on + strand at 2381.265 kb on + strand at 2381.265 kb on + strand at 2381.265 kb on + strand at 2381.265 kb on + strand at 2381.265 kb on + strand at 2381.265 kb on + strand at 2381.265 kb on + strand at 2381.265 kb on + strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.266 kb on - strand at 2381.397 kb on + strand, within Psest_2231 at 2381.397 kb on + strand, within Psest_2231 at 2381.397 kb on + strand, within Psest_2231 at 2381.397 kb on + strand, within Psest_2231 at 2381.397 kb on + strand, within Psest_2231 at 2381.397 kb on + strand, within Psest_2231 at 2381.397 kb on + strand, within Psest_2231 at 2381.398 kb on - strand, within Psest_2231 at 2381.398 kb on - strand, within Psest_2231 at 2381.398 kb on - strand, within Psest_2231 at 2381.398 kb on - strand, within Psest_2231 at 2381.398 kb on - strand, within Psest_2231 at 2381.545 kb on - strand, within Psest_2231 at 2381.627 kb on - strand, within Psest_2231 at 2381.662 kb on - strand, within Psest_2231 at 2381.664 kb on + strand, within Psest_2231 at 2381.664 kb on + strand, within Psest_2231 at 2381.664 kb on + strand, within Psest_2231 at 2381.665 kb on - strand, within Psest_2231 at 2381.665 kb on - strand, within Psest_2231 at 2381.665 kb on - strand, within Psest_2231 at 2381.665 kb on - strand, within Psest_2231 at 2381.694 kb on + strand, within Psest_2231 at 2381.694 kb on + strand, within Psest_2231 at 2381.694 kb on + strand, within Psest_2231 at 2381.694 kb on + strand, within Psest_2231 at 2381.694 kb on + strand, within Psest_2231 at 2381.694 kb on + strand, within Psest_2231 at 2381.694 kb on + strand, within Psest_2231 at 2381.694 kb on + strand, within Psest_2231 at 2381.694 kb on + strand, within Psest_2231 at 2381.694 kb on + strand, within Psest_2231 at 2381.694 kb on + strand, within Psest_2231 at 2381.695 kb on - strand, within Psest_2231 at 2381.695 kb on - strand, within Psest_2231 at 2381.695 kb on - strand, within Psest_2231 at 2381.695 kb on - strand, within Psest_2231 at 2381.695 kb on - strand, within Psest_2231 at 2381.695 kb on - strand, within Psest_2231 at 2381.813 kb on + strand at 2381.813 kb on + strand at 2381.814 kb on - strand at 2381.825 kb on + strand at 2381.849 kb on + strand at 2381.849 kb on + strand at 2381.849 kb on + strand at 2381.850 kb on - strand at 2381.850 kb on - strand at 2381.850 kb on - strand at 2381.850 kb on - strand at 2381.850 kb on - strand at 2381.894 kb on + strand, within Psest_2232 at 2381.894 kb on + strand, within Psest_2232 at 2381.894 kb on + strand, within Psest_2232 at 2381.894 kb on + strand, within Psest_2232 at 2381.894 kb on + strand, within Psest_2232 at 2381.895 kb on - strand, within Psest_2232 at 2381.895 kb on - strand, within Psest_2232 at 2381.903 kb on - strand, within Psest_2232 at 2382.011 kb on + strand, within Psest_2232 at 2382.011 kb on + strand, within Psest_2232 at 2382.012 kb on - strand, within Psest_2232 at 2382.083 kb on + strand, within Psest_2232 at 2382.083 kb on + strand, within Psest_2232 at 2382.083 kb on + strand, within Psest_2232 at 2382.084 kb on - strand, within Psest_2232 at 2382.084 kb on - strand, within Psest_2232 at 2382.084 kb on - strand, within Psest_2232 at 2382.122 kb on + strand, within Psest_2232 at 2382.122 kb on + strand, within Psest_2232 at 2382.122 kb on + strand, within Psest_2232 at 2382.122 kb on + strand, within Psest_2232 at 2382.122 kb on + strand, within Psest_2232 at 2382.122 kb on + strand, within Psest_2232 at 2382.123 kb on - strand, within Psest_2232 at 2382.145 kb on + strand, within Psest_2232 at 2382.145 kb on + strand, within Psest_2232 at 2382.145 kb on + strand, within Psest_2232 at 2382.185 kb on + strand, within Psest_2232 at 2382.185 kb on + strand, within Psest_2232 at 2382.185 kb on + strand, within Psest_2232 at 2382.185 kb on + strand, within Psest_2232 at 2382.185 kb on + strand, within Psest_2232 at 2382.185 kb on + strand, within Psest_2232 at 2382.185 kb on + strand, within Psest_2232 at 2382.186 kb on - strand, within Psest_2232 at 2382.186 kb on - strand, within Psest_2232 at 2382.186 kb on - strand, within Psest_2232 at 2382.186 kb on - strand, within Psest_2232 at 2382.186 kb on - strand, within Psest_2232
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 75 mM remove 2,378,929 + -0.4 2,378,930 - -2.4 2,378,930 - +2.6 2,378,958 + +0.3 2,378,958 + -0.6 2,378,958 + -2.1 2,378,973 + +0.5 2,378,974 - -0.7 2,378,975 + +0.6 2,378,975 + +0.7 2,378,975 + +1.3 2,378,975 + -0.9 2,378,975 + -1.2 2,378,975 + -1.8 2,379,066 + +1.0 2,379,067 - -0.6 2,379,086 + -0.8 2,379,086 + -2.1 2,379,200 + +1.3 2,379,200 + -3.0 2,379,201 - +0.2 2,379,201 - -1.0 2,379,202 + -0.6 2,379,202 + +0.2 2,379,202 + +0.5 2,379,202 + -0.8 2,379,202 + +0.2 2,379,202 + -1.7 2,379,202 + -2.3 2,379,202 + -1.3 2,379,202 + -1.5 2,379,202 + -1.0 2,379,202 + +0.8 2,379,202 + -1.1 2,379,203 - -3.0 2,379,203 - -1.0 2,379,203 - -0.9 2,379,203 - -1.9 2,379,203 - +1.0 2,379,203 - -0.0 2,379,203 - +0.8 2,379,203 - +0.6 2,379,287 + -1.3 2,379,288 - -1.3 2,379,323 - -0.2 2,379,326 - -1.4 2,379,326 - -0.6 2,379,527 + Psest_2229 0.33 -1.0 2,379,711 + Psest_2229 0.70 -1.7 2,379,711 + Psest_2229 0.70 -0.2 2,379,712 - Psest_2229 0.70 -1.4 2,379,712 - Psest_2229 0.70 -1.4 2,379,712 - Psest_2229 0.70 +0.2 2,379,907 - +1.2 2,379,992 - -1.6 2,380,025 + +1.6 2,380,025 + -0.4 2,380,026 - -1.3 2,380,026 - +1.6 2,380,026 - -0.4 2,380,055 - Psest_2230 0.11 -0.7 2,380,176 + Psest_2230 0.20 +0.8 2,380,261 - Psest_2230 0.26 -0.0 2,380,737 + Psest_2230 0.61 -0.0 2,380,737 + Psest_2230 0.61 +0.7 2,380,782 + Psest_2230 0.65 -1.0 2,380,783 - Psest_2230 0.65 +0.8 2,380,783 - Psest_2230 0.65 -0.9 2,380,801 + Psest_2230 0.66 -2.1 2,380,801 + Psest_2230 0.66 -0.9 2,380,879 - Psest_2230 0.72 -1.2 2,380,971 + Psest_2230 0.78 -1.4 2,380,972 - Psest_2230 0.79 -2.6 2,380,972 - Psest_2230 0.79 -2.0 2,381,021 - Psest_2230 0.82 +0.2 2,381,021 - Psest_2230 0.82 -1.7 2,381,021 - Psest_2230 0.82 -2.2 2,381,088 + Psest_2230 0.87 -0.0 2,381,101 - Psest_2230 0.88 -0.6 2,381,243 + +0.8 2,381,244 - +0.1 2,381,256 + +0.2 2,381,265 + +0.4 2,381,265 + -0.0 2,381,265 + -1.3 2,381,265 + -0.2 2,381,265 + +0.2 2,381,265 + -1.0 2,381,265 + +0.1 2,381,265 + +0.2 2,381,265 + -3.0 2,381,265 + -0.4 2,381,266 - -0.4 2,381,266 - -1.9 2,381,266 - -0.2 2,381,266 - -0.8 2,381,266 - -0.4 2,381,266 - -1.5 2,381,266 - -0.8 2,381,266 - +1.6 2,381,266 - +3.4 2,381,266 - -0.2 2,381,266 - -2.1 2,381,266 - -2.6 2,381,266 - -0.3 2,381,266 - +0.7 2,381,266 - +0.8 2,381,266 - -1.8 2,381,266 - +1.0 2,381,266 - -1.9 2,381,266 - -1.1 2,381,266 - +1.4 2,381,266 - +2.9 2,381,266 - -0.2 2,381,266 - -0.3 2,381,266 - -2.5 2,381,266 - -0.7 2,381,397 + Psest_2231 0.15 -1.2 2,381,397 + Psest_2231 0.15 +0.6 2,381,397 + Psest_2231 0.15 -0.8 2,381,397 + Psest_2231 0.15 -1.1 2,381,397 + Psest_2231 0.15 +0.3 2,381,397 + Psest_2231 0.15 -1.6 2,381,397 + Psest_2231 0.15 +0.2 2,381,398 - Psest_2231 0.15 -2.3 2,381,398 - Psest_2231 0.15 -1.0 2,381,398 - Psest_2231 0.15 -1.0 2,381,398 - Psest_2231 0.15 -0.8 2,381,398 - Psest_2231 0.15 -0.5 2,381,545 - Psest_2231 0.50 -1.9 2,381,627 - Psest_2231 0.69 +1.0 2,381,662 - Psest_2231 0.78 -1.6 2,381,664 + Psest_2231 0.78 -0.6 2,381,664 + Psest_2231 0.78 -2.2 2,381,664 + Psest_2231 0.78 -1.5 2,381,665 - Psest_2231 0.78 -2.2 2,381,665 - Psest_2231 0.78 -1.6 2,381,665 - Psest_2231 0.78 -2.5 2,381,665 - Psest_2231 0.78 -1.7 2,381,694 + Psest_2231 0.85 -0.6 2,381,694 + Psest_2231 0.85 -0.2 2,381,694 + Psest_2231 0.85 -1.6 2,381,694 + Psest_2231 0.85 -0.4 2,381,694 + Psest_2231 0.85 +1.9 2,381,694 + Psest_2231 0.85 +0.7 2,381,694 + Psest_2231 0.85 -1.6 2,381,694 + Psest_2231 0.85 +1.5 2,381,694 + Psest_2231 0.85 -0.1 2,381,694 + Psest_2231 0.85 -0.6 2,381,694 + Psest_2231 0.85 +1.8 2,381,695 - Psest_2231 0.85 -0.9 2,381,695 - Psest_2231 0.85 -1.3 2,381,695 - Psest_2231 0.85 +0.1 2,381,695 - Psest_2231 0.85 -1.3 2,381,695 - Psest_2231 0.85 +0.2 2,381,695 - Psest_2231 0.85 -0.6 2,381,813 + -0.2 2,381,813 + +1.0 2,381,814 - -1.7 2,381,825 + +0.9 2,381,849 + +2.2 2,381,849 + +1.0 2,381,849 + -0.9 2,381,850 - -1.3 2,381,850 - +0.9 2,381,850 - -0.1 2,381,850 - -3.0 2,381,850 - +1.6 2,381,894 + Psest_2232 0.12 -0.1 2,381,894 + Psest_2232 0.12 -0.4 2,381,894 + Psest_2232 0.12 +2.5 2,381,894 + Psest_2232 0.12 +0.4 2,381,894 + Psest_2232 0.12 +1.0 2,381,895 - Psest_2232 0.12 -0.5 2,381,895 - Psest_2232 0.12 +0.2 2,381,903 - Psest_2232 0.13 -1.0 2,382,011 + Psest_2232 0.26 +0.4 2,382,011 + Psest_2232 0.26 +0.6 2,382,012 - Psest_2232 0.26 +1.2 2,382,083 + Psest_2232 0.35 -0.6 2,382,083 + Psest_2232 0.35 +1.0 2,382,083 + Psest_2232 0.35 +1.1 2,382,084 - Psest_2232 0.35 +0.3 2,382,084 - Psest_2232 0.35 -0.2 2,382,084 - Psest_2232 0.35 -0.4 2,382,122 + Psest_2232 0.39 +3.0 2,382,122 + Psest_2232 0.39 +2.0 2,382,122 + Psest_2232 0.39 +2.6 2,382,122 + Psest_2232 0.39 -1.8 2,382,122 + Psest_2232 0.39 -0.1 2,382,122 + Psest_2232 0.39 -0.2 2,382,123 - Psest_2232 0.40 -2.8 2,382,145 + Psest_2232 0.42 -0.5 2,382,145 + Psest_2232 0.42 -0.8 2,382,145 + Psest_2232 0.42 +0.0 2,382,185 + Psest_2232 0.47 +1.4 2,382,185 + Psest_2232 0.47 +1.6 2,382,185 + Psest_2232 0.47 -0.8 2,382,185 + Psest_2232 0.47 +0.7 2,382,185 + Psest_2232 0.47 +1.5 2,382,185 + Psest_2232 0.47 +2.0 2,382,185 + Psest_2232 0.47 +0.7 2,382,186 - Psest_2232 0.47 +1.1 2,382,186 - Psest_2232 0.47 +0.6 2,382,186 - Psest_2232 0.47 -1.9 2,382,186 - Psest_2232 0.47 +1.2 2,382,186 - Psest_2232 0.47 +0.2
Or see this region's nucleotide sequence