Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2182

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2181 and Psest_2182 are separated by 175 nucleotidesPsest_2182 and Psest_2183 are separated by 217 nucleotides Psest_2181: Psest_2181 - Protein of unknown function (DUF1615)., at 2,338,175 to 2,339,341 _2181 Psest_2182: Psest_2182 - Protein of unknown function (DUF2790)., at 2,339,517 to 2,339,819 _2182 Psest_2183: Psest_2183 - Transcriptional regulator, at 2,340,037 to 2,340,972 _2183 Position (kb) 2339 2340Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2338.529 kb on + strand, within Psest_2181at 2338.530 kb on - strand, within Psest_2181at 2338.647 kb on + strand, within Psest_2181at 2338.647 kb on + strand, within Psest_2181at 2338.647 kb on + strand, within Psest_2181at 2338.647 kb on + strand, within Psest_2181at 2338.647 kb on + strand, within Psest_2181at 2338.647 kb on + strand, within Psest_2181at 2338.647 kb on + strand, within Psest_2181at 2338.648 kb on - strand, within Psest_2181at 2338.648 kb on - strand, within Psest_2181at 2338.648 kb on - strand, within Psest_2181at 2338.648 kb on - strand, within Psest_2181at 2338.648 kb on - strand, within Psest_2181at 2338.648 kb on - strand, within Psest_2181at 2338.648 kb on - strand, within Psest_2181at 2338.648 kb on - strand, within Psest_2181at 2338.702 kb on - strand, within Psest_2181at 2338.707 kb on + strand, within Psest_2181at 2338.838 kb on + strand, within Psest_2181at 2338.838 kb on + strand, within Psest_2181at 2338.838 kb on + strand, within Psest_2181at 2338.838 kb on + strand, within Psest_2181at 2338.838 kb on + strand, within Psest_2181at 2338.839 kb on - strand, within Psest_2181at 2338.839 kb on - strand, within Psest_2181at 2338.839 kb on - strand, within Psest_2181at 2338.839 kb on - strand, within Psest_2181at 2338.839 kb on - strand, within Psest_2181at 2338.878 kb on + strand, within Psest_2181at 2338.878 kb on + strand, within Psest_2181at 2338.878 kb on + strand, within Psest_2181at 2338.879 kb on - strand, within Psest_2181at 2338.879 kb on - strand, within Psest_2181at 2338.960 kb on - strand, within Psest_2181at 2339.097 kb on + strand, within Psest_2181at 2339.097 kb on + strand, within Psest_2181at 2339.097 kb on + strand, within Psest_2181at 2339.097 kb on + strand, within Psest_2181at 2339.098 kb on - strand, within Psest_2181at 2339.098 kb on - strand, within Psest_2181at 2339.098 kb on - strand, within Psest_2181at 2339.098 kb on - strand, within Psest_2181at 2339.380 kb on + strandat 2339.380 kb on + strandat 2339.381 kb on - strandat 2339.551 kb on + strand, within Psest_2182at 2339.552 kb on - strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strandat 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.628 kb on + strand, within Psest_2182at 2339.628 kb on + strand, within Psest_2182at 2339.628 kb on + strand, within Psest_2182at 2339.628 kb on + strand, within Psest_2182at 2339.628 kb on + strand, within Psest_2182at 2339.629 kb on - strand, within Psest_2182at 2339.629 kb on - strand, within Psest_2182at 2339.671 kb on + strand, within Psest_2182at 2339.672 kb on - strand, within Psest_2182at 2339.677 kb on + strand, within Psest_2182at 2339.702 kb on - strand, within Psest_2182at 2339.757 kb on + strand, within Psest_2182at 2339.757 kb on + strand, within Psest_2182at 2339.758 kb on - strand, within Psest_2182at 2339.852 kb on + strandat 2339.852 kb on + strandat 2339.852 kb on + strandat 2339.943 kb on - strandat 2340.245 kb on + strand, within Psest_2183at 2340.245 kb on + strand, within Psest_2183at 2340.245 kb on + strand, within Psest_2183at 2340.245 kb on + strand, within Psest_2183at 2340.245 kb on + strand, within Psest_2183at 2340.245 kb on + strand, within Psest_2183at 2340.632 kb on + strand, within Psest_2183at 2340.633 kb on - strand, within Psest_2183at 2340.633 kb on - strand, within Psest_2183at 2340.678 kb on + strand, within Psest_2183at 2340.679 kb on - strand, within Psest_2183

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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2,338,529 + Psest_2181 0.30 -0.5
2,338,530 - Psest_2181 0.30 +0.4
2,338,647 + Psest_2181 0.40 -0.2
2,338,647 + Psest_2181 0.40 -1.1
2,338,647 + Psest_2181 0.40 -0.7
2,338,647 + Psest_2181 0.40 +2.6
2,338,647 + Psest_2181 0.40 +1.9
2,338,647 + Psest_2181 0.40 -0.3
2,338,647 + Psest_2181 0.40 +0.5
2,338,648 - Psest_2181 0.41 -1.5
2,338,648 - Psest_2181 0.41 -1.6
2,338,648 - Psest_2181 0.41 +0.2
2,338,648 - Psest_2181 0.41 +0.0
2,338,648 - Psest_2181 0.41 +2.6
2,338,648 - Psest_2181 0.41 -2.7
2,338,648 - Psest_2181 0.41 -1.5
2,338,648 - Psest_2181 0.41 +2.6
2,338,702 - Psest_2181 0.45 -0.3
2,338,707 + Psest_2181 0.46 +0.3
2,338,838 + Psest_2181 0.57 -0.5
2,338,838 + Psest_2181 0.57 +1.3
2,338,838 + Psest_2181 0.57 -0.4
2,338,838 + Psest_2181 0.57 +2.6
2,338,838 + Psest_2181 0.57 -1.6
2,338,839 - Psest_2181 0.57 +1.6
2,338,839 - Psest_2181 0.57 -2.1
2,338,839 - Psest_2181 0.57 -1.7
2,338,839 - Psest_2181 0.57 -0.4
2,338,839 - Psest_2181 0.57 +0.0
2,338,878 + Psest_2181 0.60 +1.6
2,338,878 + Psest_2181 0.60 -1.4
2,338,878 + Psest_2181 0.60 -0.1
2,338,879 - Psest_2181 0.60 -2.3
2,338,879 - Psest_2181 0.60 -0.6
2,338,960 - Psest_2181 0.67 +0.6
2,339,097 + Psest_2181 0.79 +1.6
2,339,097 + Psest_2181 0.79 -2.6
2,339,097 + Psest_2181 0.79 -0.2
2,339,097 + Psest_2181 0.79 +0.2
2,339,098 - Psest_2181 0.79 -1.1
2,339,098 - Psest_2181 0.79 +0.3
2,339,098 - Psest_2181 0.79 +1.1
2,339,098 - Psest_2181 0.79 -0.1
2,339,380 + -1.7
2,339,380 + +0.6
2,339,381 - +4.1
2,339,551 + Psest_2182 0.11 +2.2
2,339,552 - Psest_2182 0.12 -0.2
2,339,587 + Psest_2182 0.23 +1.6
2,339,587 + Psest_2182 0.23 -1.3
2,339,587 + Psest_2182 0.23 -0.2
2,339,587 + Psest_2182 0.23 -0.2
2,339,587 + +3.4
2,339,587 + Psest_2182 0.23 +0.0
2,339,587 + Psest_2182 0.23 +0.4
2,339,587 + Psest_2182 0.23 +0.6
2,339,587 + Psest_2182 0.23 -0.1
2,339,587 + Psest_2182 0.23 -0.7
2,339,587 + Psest_2182 0.23 +0.7
2,339,587 + Psest_2182 0.23 -1.6
2,339,588 - Psest_2182 0.23 -0.9
2,339,588 - Psest_2182 0.23 -1.6
2,339,588 - Psest_2182 0.23 -0.7
2,339,588 - Psest_2182 0.23 -2.0
2,339,588 - Psest_2182 0.23 +1.4
2,339,588 - Psest_2182 0.23 +0.4
2,339,588 - Psest_2182 0.23 -1.6
2,339,588 - Psest_2182 0.23 -1.5
2,339,588 - Psest_2182 0.23 -2.6
2,339,588 - Psest_2182 0.23 +0.3
2,339,588 - Psest_2182 0.23 -1.3
2,339,628 + Psest_2182 0.37 -0.7
2,339,628 + Psest_2182 0.37 -0.3
2,339,628 + Psest_2182 0.37 -1.0
2,339,628 + Psest_2182 0.37 -3.1
2,339,628 + Psest_2182 0.37 -0.6
2,339,629 - Psest_2182 0.37 +3.0
2,339,629 - Psest_2182 0.37 -0.5
2,339,671 + Psest_2182 0.51 -1.3
2,339,672 - Psest_2182 0.51 +0.0
2,339,677 + Psest_2182 0.53 +0.4
2,339,702 - Psest_2182 0.61 -1.2
2,339,757 + Psest_2182 0.79 +0.0
2,339,757 + Psest_2182 0.79 -0.5
2,339,758 - Psest_2182 0.80 -0.4
2,339,852 + -0.2
2,339,852 + -1.2
2,339,852 + -0.7
2,339,943 - +1.5
2,340,245 + Psest_2183 0.22 -1.7
2,340,245 + Psest_2183 0.22 -0.4
2,340,245 + Psest_2183 0.22 -1.1
2,340,245 + Psest_2183 0.22 -2.2
2,340,245 + Psest_2183 0.22 +1.8
2,340,245 + Psest_2183 0.22 -2.1
2,340,632 + Psest_2183 0.64 +2.6
2,340,633 - Psest_2183 0.64 +1.1
2,340,633 - Psest_2183 0.64 -0.4
2,340,678 + Psest_2183 0.68 -0.2
2,340,679 - Psest_2183 0.69 -1.3

Or see this region's nucleotide sequence