Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2130

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2129 and Psest_2130 are separated by 94 nucleotidesPsest_2130 and Psest_2131 are separated by 202 nucleotidesPsest_2131 and Psest_2132 are separated by 63 nucleotides Psest_2129: Psest_2129 - ABC-type phosphate transport system, periplasmic component, at 2,261,066 to 2,262,424 _2129 Psest_2130: Psest_2130 - exodeoxyribonuclease III, at 2,262,519 to 2,263,331 _2130 Psest_2131: Psest_2131 - Acetyltransferases, at 2,263,534 to 2,264,169 _2131 Psest_2132: Psest_2132 - Outer membrane protein, at 2,264,233 to 2,266,047 _2132 Position (kb) 2262 2263 2264Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2261.535 kb on + strand, within Psest_2129at 2261.535 kb on + strand, within Psest_2129at 2261.535 kb on + strand, within Psest_2129at 2261.535 kb on + strand, within Psest_2129at 2261.536 kb on - strand, within Psest_2129at 2261.536 kb on - strand, within Psest_2129at 2261.536 kb on - strand, within Psest_2129at 2261.536 kb on - strand, within Psest_2129at 2261.536 kb on - strand, within Psest_2129at 2261.574 kb on + strand, within Psest_2129at 2261.574 kb on + strand, within Psest_2129at 2261.574 kb on + strand, within Psest_2129at 2261.574 kb on + strand, within Psest_2129at 2261.826 kb on + strand, within Psest_2129at 2261.826 kb on + strand, within Psest_2129at 2261.826 kb on + strand, within Psest_2129at 2261.826 kb on + strand, within Psest_2129at 2261.826 kb on + strand, within Psest_2129at 2261.827 kb on - strand, within Psest_2129at 2261.827 kb on - strand, within Psest_2129at 2261.827 kb on - strand, within Psest_2129at 2261.827 kb on - strand, within Psest_2129at 2261.827 kb on - strand, within Psest_2129at 2261.827 kb on - strand, within Psest_2129at 2261.827 kb on - strand, within Psest_2129at 2261.827 kb on - strand, within Psest_2129at 2261.827 kb on - strand, within Psest_2129at 2261.827 kb on - strand, within Psest_2129at 2262.150 kb on + strand, within Psest_2129at 2262.151 kb on - strand, within Psest_2129at 2262.440 kb on + strandat 2262.440 kb on + strandat 2262.440 kb on + strandat 2262.441 kb on - strandat 2262.441 kb on - strandat 2262.441 kb on - strandat 2262.441 kb on - strandat 2262.457 kb on - strandat 2262.501 kb on + strandat 2262.502 kb on - strandat 2262.634 kb on + strand, within Psest_2130at 2262.635 kb on - strand, within Psest_2130at 2262.635 kb on - strand, within Psest_2130at 2262.943 kb on + strand, within Psest_2130at 2262.944 kb on - strand, within Psest_2130at 2263.145 kb on - strand, within Psest_2130at 2263.165 kb on + strand, within Psest_2130at 2263.350 kb on + strandat 2263.445 kb on - strandat 2263.445 kb on - strandat 2263.445 kb on - strandat 2263.455 kb on - strandat 2263.492 kb on + strandat 2263.493 kb on - strandat 2263.601 kb on - strand, within Psest_2131at 2263.601 kb on - strand, within Psest_2131at 2263.633 kb on + strand, within Psest_2131at 2263.713 kb on - strand, within Psest_2131at 2263.937 kb on + strand, within Psest_2131at 2263.937 kb on + strand, within Psest_2131at 2263.937 kb on + strand, within Psest_2131at 2263.937 kb on + strand, within Psest_2131at 2263.938 kb on - strand, within Psest_2131at 2263.938 kb on - strand, within Psest_2131at 2264.065 kb on + strand, within Psest_2131at 2264.168 kb on - strandat 2264.260 kb on - strandat 2264.270 kb on + strandat 2264.306 kb on + strandat 2264.307 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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2,261,535 + Psest_2129 0.35 +1.0
2,261,535 + Psest_2129 0.35 -2.0
2,261,535 + Psest_2129 0.35 -0.4
2,261,535 + Psest_2129 0.35 +1.9
2,261,536 - Psest_2129 0.35 +0.4
2,261,536 - Psest_2129 0.35 +0.4
2,261,536 - Psest_2129 0.35 +0.4
2,261,536 - Psest_2129 0.35 -1.6
2,261,536 - Psest_2129 0.35 -1.4
2,261,574 + Psest_2129 0.37 -1.5
2,261,574 + Psest_2129 0.37 -0.6
2,261,574 + Psest_2129 0.37 +0.7
2,261,574 + Psest_2129 0.37 -0.9
2,261,826 + Psest_2129 0.56 -1.4
2,261,826 + Psest_2129 0.56 -0.5
2,261,826 + Psest_2129 0.56 +0.1
2,261,826 + Psest_2129 0.56 +0.7
2,261,826 + Psest_2129 0.56 -1.1
2,261,827 - Psest_2129 0.56 -1.6
2,261,827 - Psest_2129 0.56 -1.2
2,261,827 - Psest_2129 0.56 -1.1
2,261,827 - Psest_2129 0.56 +1.4
2,261,827 - Psest_2129 0.56 +0.4
2,261,827 - Psest_2129 0.56 -0.3
2,261,827 - Psest_2129 0.56 -1.9
2,261,827 - Psest_2129 0.56 -0.2
2,261,827 - Psest_2129 0.56 -0.9
2,261,827 - Psest_2129 0.56 -0.6
2,262,150 + Psest_2129 0.80 +0.4
2,262,151 - Psest_2129 0.80 -2.1
2,262,440 + +2.8
2,262,440 + +0.0
2,262,440 + -0.3
2,262,441 - +0.1
2,262,441 - +2.4
2,262,441 - -2.1
2,262,441 - -1.5
2,262,457 - +3.5
2,262,501 + -2.6
2,262,502 - +1.2
2,262,634 + Psest_2130 0.14 -1.1
2,262,635 - Psest_2130 0.14 +0.4
2,262,635 - Psest_2130 0.14 -0.6
2,262,943 + Psest_2130 0.52 -0.7
2,262,944 - Psest_2130 0.52 -0.9
2,263,145 - Psest_2130 0.77 +0.0
2,263,165 + Psest_2130 0.79 -2.9
2,263,350 + +0.3
2,263,445 - +0.2
2,263,445 - -2.7
2,263,445 - -0.3
2,263,455 - -1.6
2,263,492 + -1.0
2,263,493 - -0.5
2,263,601 - Psest_2131 0.11 -0.1
2,263,601 - Psest_2131 0.11 +0.4
2,263,633 + Psest_2131 0.16 -2.1
2,263,713 - Psest_2131 0.28 -1.6
2,263,937 + Psest_2131 0.63 +1.8
2,263,937 + Psest_2131 0.63 -1.3
2,263,937 + Psest_2131 0.63 -1.3
2,263,937 + Psest_2131 0.63 +1.0
2,263,938 - Psest_2131 0.64 -1.4
2,263,938 - Psest_2131 0.64 +2.0
2,264,065 + Psest_2131 0.83 -0.1
2,264,168 - -0.1
2,264,260 - -0.6
2,264,270 + -0.8
2,264,306 + -2.2
2,264,307 - +2.0

Or see this region's nucleotide sequence