Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2053

Experiment: Chlorate 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2052 and Psest_2053 are separated by 131 nucleotidesPsest_2053 and Psest_2054 are separated by 165 nucleotides Psest_2052: Psest_2052 - PAS domain S-box, at 2,175,909 to 2,177,225 _2052 Psest_2053: Psest_2053 - Uncharacterized low-complexity proteins, at 2,177,357 to 2,178,001 _2053 Psest_2054: Psest_2054 - PQQ-dependent dehydrogenase, methanol/ethanol family, at 2,178,167 to 2,180,038 _2054 Position (kb) 2177 2178 2179Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2176.492 kb on + strand, within Psest_2052at 2176.493 kb on - strand, within Psest_2052at 2176.525 kb on + strand, within Psest_2052at 2176.526 kb on - strand, within Psest_2052at 2176.526 kb on - strand, within Psest_2052at 2176.526 kb on - strand, within Psest_2052at 2176.588 kb on + strand, within Psest_2052at 2176.588 kb on + strand, within Psest_2052at 2176.624 kb on + strand, within Psest_2052at 2176.661 kb on + strand, within Psest_2052at 2176.661 kb on + strand, within Psest_2052at 2176.661 kb on + strand, within Psest_2052at 2176.661 kb on + strand, within Psest_2052at 2176.662 kb on - strand, within Psest_2052at 2176.662 kb on - strand, within Psest_2052at 2176.662 kb on - strand, within Psest_2052at 2176.662 kb on - strand, within Psest_2052at 2176.776 kb on + strand, within Psest_2052at 2176.776 kb on + strand, within Psest_2052at 2176.991 kb on - strand, within Psest_2052at 2177.082 kb on + strand, within Psest_2052at 2177.143 kb on + strandat 2177.143 kb on + strandat 2177.143 kb on + strandat 2177.229 kb on + strandat 2177.230 kb on - strandat 2177.230 kb on - strandat 2177.230 kb on - strandat 2177.279 kb on - strandat 2177.305 kb on + strandat 2177.305 kb on + strandat 2177.347 kb on + strandat 2177.348 kb on - strandat 2177.348 kb on - strandat 2177.421 kb on + strandat 2177.422 kb on - strand, within Psest_2053at 2177.899 kb on + strand, within Psest_2053at 2177.914 kb on + strand, within Psest_2053at 2178.116 kb on + strandat 2178.309 kb on + strandat 2178.309 kb on + strandat 2178.309 kb on + strandat 2178.309 kb on + strandat 2178.309 kb on + strandat 2178.309 kb on + strandat 2178.309 kb on + strandat 2178.309 kb on + strandat 2178.309 kb on + strandat 2178.310 kb on - strandat 2178.414 kb on + strand, within Psest_2054at 2178.414 kb on + strand, within Psest_2054at 2178.414 kb on + strand, within Psest_2054at 2178.414 kb on + strand, within Psest_2054at 2178.414 kb on + strand, within Psest_2054at 2178.461 kb on + strand, within Psest_2054at 2178.555 kb on + strand, within Psest_2054at 2178.555 kb on + strand, within Psest_2054at 2178.556 kb on - strand, within Psest_2054at 2178.556 kb on - strand, within Psest_2054at 2178.556 kb on - strand, within Psest_2054at 2178.607 kb on - strand, within Psest_2054at 2178.627 kb on + strand, within Psest_2054at 2178.627 kb on + strand, within Psest_2054at 2178.628 kb on - strand, within Psest_2054at 2178.657 kb on + strand, within Psest_2054at 2178.657 kb on + strand, within Psest_2054at 2178.658 kb on - strand, within Psest_2054at 2178.681 kb on + strand, within Psest_2054at 2178.791 kb on + strand, within Psest_2054at 2178.891 kb on + strand, within Psest_2054at 2178.891 kb on + strand, within Psest_2054at 2178.891 kb on + strand, within Psest_2054at 2178.891 kb on + strand, within Psest_2054at 2178.891 kb on + strand, within Psest_2054at 2178.954 kb on + strand, within Psest_2054

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
remove
2,176,492 + Psest_2052 0.44 -0.1
2,176,493 - Psest_2052 0.44 -1.4
2,176,525 + Psest_2052 0.47 +0.2
2,176,526 - Psest_2052 0.47 -3.1
2,176,526 - Psest_2052 0.47 -0.4
2,176,526 - Psest_2052 0.47 -0.4
2,176,588 + Psest_2052 0.52 -1.6
2,176,588 + Psest_2052 0.52 -0.2
2,176,624 + Psest_2052 0.54 +0.4
2,176,661 + Psest_2052 0.57 +0.6
2,176,661 + Psest_2052 0.57 -0.8
2,176,661 + Psest_2052 0.57 -1.1
2,176,661 + Psest_2052 0.57 +1.0
2,176,662 - Psest_2052 0.57 -1.6
2,176,662 - Psest_2052 0.57 -1.3
2,176,662 - Psest_2052 0.57 -1.8
2,176,662 - Psest_2052 0.57 -1.7
2,176,776 + Psest_2052 0.66 -0.6
2,176,776 + Psest_2052 0.66 +0.8
2,176,991 - Psest_2052 0.82 +2.3
2,177,082 + Psest_2052 0.89 +1.8
2,177,143 + -1.8
2,177,143 + -2.5
2,177,143 + -1.3
2,177,229 + +1.0
2,177,230 - +0.2
2,177,230 - +0.1
2,177,230 - -0.4
2,177,279 - -1.2
2,177,305 + -0.0
2,177,305 + -0.7
2,177,347 + -1.8
2,177,348 - -0.7
2,177,348 - +2.6
2,177,421 + -0.1
2,177,422 - Psest_2053 0.10 -0.9
2,177,899 + Psest_2053 0.84 -1.8
2,177,914 + Psest_2053 0.86 -1.3
2,178,116 + -1.9
2,178,309 + +0.5
2,178,309 + -2.5
2,178,309 + -2.3
2,178,309 + +0.6
2,178,309 + -0.9
2,178,309 + -0.2
2,178,309 + -0.4
2,178,309 + -0.6
2,178,309 + -1.5
2,178,310 - -0.0
2,178,414 + Psest_2054 0.13 +0.2
2,178,414 + Psest_2054 0.13 +0.5
2,178,414 + Psest_2054 0.13 -2.3
2,178,414 + Psest_2054 0.13 +2.6
2,178,414 + Psest_2054 0.13 -0.1
2,178,461 + Psest_2054 0.16 +0.1
2,178,555 + Psest_2054 0.21 -2.7
2,178,555 + Psest_2054 0.21 -0.7
2,178,556 - Psest_2054 0.21 -0.1
2,178,556 - Psest_2054 0.21 -2.1
2,178,556 - Psest_2054 0.21 -0.8
2,178,607 - Psest_2054 0.24 -1.3
2,178,627 + Psest_2054 0.25 -1.6
2,178,627 + Psest_2054 0.25 -0.2
2,178,628 - Psest_2054 0.25 +1.1
2,178,657 + Psest_2054 0.26 -2.0
2,178,657 + Psest_2054 0.26 +0.2
2,178,658 - Psest_2054 0.26 -0.6
2,178,681 + Psest_2054 0.27 -0.4
2,178,791 + Psest_2054 0.33 +2.1
2,178,891 + Psest_2054 0.39 +0.8
2,178,891 + Psest_2054 0.39 +1.0
2,178,891 + Psest_2054 0.39 -1.8
2,178,891 + Psest_2054 0.39 -2.0
2,178,891 + Psest_2054 0.39 +2.3
2,178,954 + Psest_2054 0.42 -0.8

Or see this region's nucleotide sequence