Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1968

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1966 and Psest_1967 are separated by 168 nucleotidesPsest_1967 and Psest_1968 are separated by 230 nucleotidesPsest_1968 and Psest_1969 overlap by 1 nucleotidesPsest_1969 and Psest_1971 are separated by 284 nucleotides Psest_1966: Psest_1966 - Glycine/D-amino acid oxidases (deaminating), at 2,079,899 to 2,081,182 _1966 Psest_1967: Psest_1967 - tRNA_Val_GAC, at 2,081,351 to 2,081,427 _1967 Psest_1968: Psest_1968 - threonyl-tRNA synthetase, at 2,081,658 to 2,083,580 _1968 Psest_1969: Psest_1969 - translation initiation factor IF-3, at 2,083,580 to 2,084,131 _1969 Psest_1971: Psest_1971 - ribosomal protein L20, at 2,084,416 to 2,084,772 _1971 Position (kb) 2081 2082 2083 2084Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2080.697 kb on + strand, within Psest_1966at 2080.705 kb on + strand, within Psest_1966at 2080.706 kb on - strand, within Psest_1966at 2080.802 kb on + strand, within Psest_1966at 2080.802 kb on + strand, within Psest_1966at 2080.803 kb on - strand, within Psest_1966at 2080.831 kb on + strand, within Psest_1966at 2080.836 kb on + strand, within Psest_1966at 2080.837 kb on - strand, within Psest_1966at 2080.945 kb on + strand, within Psest_1966at 2080.947 kb on + strand, within Psest_1966at 2080.947 kb on + strand, within Psest_1966at 2080.947 kb on + strand, within Psest_1966at 2080.948 kb on - strand, within Psest_1966at 2080.948 kb on - strand, within Psest_1966at 2080.948 kb on - strand, within Psest_1966at 2080.948 kb on - strand, within Psest_1966at 2080.951 kb on + strand, within Psest_1966at 2080.951 kb on + strand, within Psest_1966at 2080.951 kb on + strand, within Psest_1966at 2080.951 kb on + strand, within Psest_1966at 2080.952 kb on - strand, within Psest_1966at 2081.067 kb on + strandat 2081.151 kb on + strandat 2081.151 kb on + strandat 2081.154 kb on + strandat 2081.154 kb on + strandat 2081.154 kb on + strandat 2081.154 kb on + strandat 2081.155 kb on - strandat 2081.155 kb on - strandat 2081.155 kb on - strandat 2081.155 kb on - strandat 2081.155 kb on - strandat 2081.182 kb on + strandat 2081.183 kb on - strandat 2081.189 kb on + strandat 2081.261 kb on - strandat 2081.261 kb on - strandat 2081.261 kb on - strandat 2081.264 kb on + strandat 2081.264 kb on + strandat 2081.283 kb on + strandat 2081.295 kb on - strandat 2081.629 kb on + strandat 2081.642 kb on + strandat 2084.166 kb on + strandat 2084.166 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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2,080,697 + Psest_1966 0.62 -0.7
2,080,705 + Psest_1966 0.63 -1.6
2,080,706 - Psest_1966 0.63 -0.1
2,080,802 + Psest_1966 0.70 -0.6
2,080,802 + Psest_1966 0.70 +0.0
2,080,803 - Psest_1966 0.70 -1.6
2,080,831 + Psest_1966 0.73 -1.4
2,080,836 + Psest_1966 0.73 -0.8
2,080,837 - Psest_1966 0.73 +0.2
2,080,945 + Psest_1966 0.81 +0.6
2,080,947 + Psest_1966 0.82 +0.4
2,080,947 + Psest_1966 0.82 -1.4
2,080,947 + Psest_1966 0.82 +0.0
2,080,948 - Psest_1966 0.82 +1.3
2,080,948 - Psest_1966 0.82 -1.1
2,080,948 - Psest_1966 0.82 +2.3
2,080,948 - Psest_1966 0.82 +0.6
2,080,951 + Psest_1966 0.82 +1.1
2,080,951 + Psest_1966 0.82 -2.7
2,080,951 + Psest_1966 0.82 -0.3
2,080,951 + Psest_1966 0.82 -0.9
2,080,952 - Psest_1966 0.82 -0.3
2,081,067 + +2.0
2,081,151 + -1.4
2,081,151 + -1.6
2,081,154 + -2.6
2,081,154 + -1.8
2,081,154 + -3.9
2,081,154 + +1.2
2,081,155 - -0.2
2,081,155 - +0.3
2,081,155 - -0.1
2,081,155 - -0.3
2,081,155 - -1.7
2,081,182 + -1.7
2,081,183 - -0.2
2,081,189 + +0.8
2,081,261 - -0.8
2,081,261 - -0.2
2,081,261 - -1.1
2,081,264 + +0.6
2,081,264 + -0.7
2,081,283 + -0.9
2,081,295 - +1.5
2,081,629 + +1.3
2,081,642 + +2.6
2,084,166 + +2.4
2,084,166 + -0.3

Or see this region's nucleotide sequence