Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1827

Experiment: Chlorate 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1825 and Psest_1826 are separated by 213 nucleotidesPsest_1826 and Psest_1827 are separated by 283 nucleotidesPsest_1827 and Psest_1828 are separated by 285 nucleotides Psest_1825: Psest_1825 - Predicted nucleoside-diphosphate sugar epimerases, at 1,923,758 to 1,925,773 _1825 Psest_1826: Psest_1826 - hypothetical protein, at 1,925,987 to 1,926,394 _1826 Psest_1827: Psest_1827 - Phosphopantetheinyl transferase component of siderophore synthetase, at 1,926,678 to 1,927,415 _1827 Psest_1828: Psest_1828 - polyphosphate:AMP phosphotransferase, at 1,927,701 to 1,929,200 _1828 Position (kb) 1926 1927 1928Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1925.745 kb on - strandat 1925.772 kb on - strandat 1925.774 kb on + strandat 1925.774 kb on + strandat 1925.774 kb on + strandat 1925.774 kb on + strandat 1925.774 kb on + strandat 1925.775 kb on - strandat 1925.775 kb on - strandat 1925.775 kb on - strandat 1925.775 kb on - strandat 1925.775 kb on - strandat 1925.778 kb on + strandat 1925.778 kb on + strandat 1925.778 kb on + strandat 1925.778 kb on + strandat 1925.779 kb on - strandat 1925.784 kb on + strandat 1925.785 kb on - strandat 1925.785 kb on - strandat 1925.884 kb on + strandat 1925.953 kb on + strandat 1925.953 kb on + strandat 1925.953 kb on + strandat 1925.954 kb on - strandat 1926.155 kb on + strand, within Psest_1826at 1926.155 kb on + strand, within Psest_1826at 1926.156 kb on - strand, within Psest_1826at 1926.156 kb on - strand, within Psest_1826at 1926.156 kb on - strand, within Psest_1826at 1926.156 kb on - strand, within Psest_1826at 1926.430 kb on - strandat 1926.430 kb on - strandat 1926.432 kb on - strandat 1926.432 kb on - strandat 1926.432 kb on - strandat 1926.552 kb on + strandat 1926.552 kb on + strandat 1926.553 kb on - strandat 1926.614 kb on + strandat 1926.615 kb on - strandat 1926.615 kb on - strandat 1926.615 kb on - strandat 1926.646 kb on + strandat 1926.646 kb on + strandat 1926.679 kb on + strandat 1926.680 kb on - strandat 1927.464 kb on + strandat 1927.464 kb on + strandat 1927.465 kb on - strandat 1927.520 kb on - strandat 1927.561 kb on - strandat 1927.561 kb on - strandat 1927.627 kb on + strandat 1927.627 kb on + strandat 1927.627 kb on + strandat 1927.627 kb on + strandat 1927.746 kb on + strandat 1927.746 kb on + strandat 1927.746 kb on + strandat 1927.747 kb on - strandat 1927.747 kb on - strandat 1927.831 kb on + strandat 1928.025 kb on + strand, within Psest_1828at 1928.216 kb on + strand, within Psest_1828at 1928.216 kb on + strand, within Psest_1828at 1928.217 kb on - strand, within Psest_1828at 1928.217 kb on - strand, within Psest_1828at 1928.260 kb on - strand, within Psest_1828at 1928.325 kb on + strand, within Psest_1828at 1928.325 kb on + strand, within Psest_1828at 1928.325 kb on + strand, within Psest_1828at 1928.325 kb on + strand, within Psest_1828at 1928.326 kb on - strand, within Psest_1828at 1928.326 kb on - strand, within Psest_1828at 1928.326 kb on - strand, within Psest_1828at 1928.329 kb on + strand, within Psest_1828at 1928.329 kb on + strand, within Psest_1828at 1928.329 kb on + strand, within Psest_1828at 1928.329 kb on + strand, within Psest_1828at 1928.330 kb on - strand, within Psest_1828

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
remove
1,925,745 - -2.0
1,925,772 - +0.5
1,925,774 + -0.2
1,925,774 + +2.9
1,925,774 + +0.8
1,925,774 + -1.0
1,925,774 + +1.6
1,925,775 - -2.9
1,925,775 - +1.6
1,925,775 - -0.9
1,925,775 - -1.1
1,925,775 - -3.6
1,925,778 + -3.0
1,925,778 + -0.4
1,925,778 + -2.7
1,925,778 + -2.8
1,925,779 - -2.0
1,925,784 + +0.4
1,925,785 - -0.2
1,925,785 - -1.3
1,925,884 + -1.3
1,925,953 + -1.0
1,925,953 + -1.3
1,925,953 + -2.5
1,925,954 - -0.6
1,926,155 + Psest_1826 0.41 -2.1
1,926,155 + Psest_1826 0.41 +0.8
1,926,156 - Psest_1826 0.41 +0.2
1,926,156 - Psest_1826 0.41 +1.6
1,926,156 - Psest_1826 0.41 +0.7
1,926,156 - Psest_1826 0.41 -0.8
1,926,430 - -0.6
1,926,430 - +0.3
1,926,432 - +0.9
1,926,432 - +0.1
1,926,432 - +0.8
1,926,552 + -0.4
1,926,552 + +0.6
1,926,553 - -0.3
1,926,614 + +1.3
1,926,615 - -2.1
1,926,615 - -0.9
1,926,615 - +0.6
1,926,646 + -2.3
1,926,646 + -1.8
1,926,679 + +0.6
1,926,680 - -0.9
1,927,464 + +0.8
1,927,464 + -0.1
1,927,465 - -1.9
1,927,520 - +0.3
1,927,561 - -1.6
1,927,561 - +0.4
1,927,627 + +0.3
1,927,627 + -2.3
1,927,627 + -1.7
1,927,627 + +0.1
1,927,746 + -1.6
1,927,746 + -0.9
1,927,746 + -0.9
1,927,747 - +0.0
1,927,747 - -2.1
1,927,831 + -1.4
1,928,025 + Psest_1828 0.22 +0.1
1,928,216 + Psest_1828 0.34 -2.6
1,928,216 + Psest_1828 0.34 -2.4
1,928,217 - Psest_1828 0.34 +0.3
1,928,217 - Psest_1828 0.34 -2.6
1,928,260 - Psest_1828 0.37 -3.0
1,928,325 + Psest_1828 0.42 -0.4
1,928,325 + Psest_1828 0.42 +0.2
1,928,325 + Psest_1828 0.42 -0.8
1,928,325 + Psest_1828 0.42 -0.3
1,928,326 - Psest_1828 0.42 +0.2
1,928,326 - Psest_1828 0.42 -0.3
1,928,326 - Psest_1828 0.42 -0.4
1,928,329 + Psest_1828 0.42 -2.3
1,928,329 + Psest_1828 0.42 +1.0
1,928,329 + Psest_1828 0.42 -2.4
1,928,329 + Psest_1828 0.42 -0.9
1,928,330 - Psest_1828 0.42 -2.3

Or see this region's nucleotide sequence