Experiment: Chlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1509 and Psest_1510 are separated by 41 nucleotides Psest_1510 and Psest_1511 are separated by 110 nucleotides Psest_1511 and Psest_1512 are separated by 21 nucleotides
Psest_1509: Psest_1509 - quinolinate synthetase complex, A subunit, at 1,608,737 to 1,609,795
_1509
Psest_1510: Psest_1510 - Putative Zn-dependent protease, contains TPR repeats, at 1,609,837 to 1,611,267
_1510
Psest_1511: Psest_1511 - Predicted redox protein, regulator of disulfide bond formation, at 1,611,378 to 1,611,629
_1511
Psest_1512: Psest_1512 - Predicted permease, at 1,611,651 to 1,612,727
_1512
Position (kb)
1609
1610
1611
1612 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 1608.882 kb on - strand, within Psest_1509 at 1608.882 kb on - strand, within Psest_1509 at 1608.882 kb on - strand, within Psest_1509 at 1608.882 kb on - strand, within Psest_1509 at 1608.884 kb on + strand, within Psest_1509 at 1608.885 kb on - strand, within Psest_1509 at 1608.885 kb on - strand, within Psest_1509 at 1608.885 kb on - strand, within Psest_1509 at 1609.154 kb on + strand, within Psest_1509 at 1609.155 kb on - strand, within Psest_1509 at 1609.155 kb on - strand, within Psest_1509 at 1609.155 kb on - strand, within Psest_1509 at 1609.289 kb on + strand, within Psest_1509 at 1609.289 kb on + strand, within Psest_1509 at 1609.289 kb on + strand, within Psest_1509 at 1609.290 kb on - strand, within Psest_1509 at 1609.290 kb on - strand, within Psest_1509 at 1609.290 kb on - strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.542 kb on - strand, within Psest_1509 at 1609.542 kb on - strand, within Psest_1509 at 1609.967 kb on + strand at 1609.989 kb on - strand, within Psest_1510 at 1609.989 kb on - strand, within Psest_1510 at 1610.140 kb on + strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.169 kb on - strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.265 kb on - strand, within Psest_1510 at 1610.265 kb on - strand, within Psest_1510 at 1611.072 kb on - strand, within Psest_1510 at 1611.072 kb on - strand, within Psest_1510 at 1611.072 kb on - strand, within Psest_1510 at 1611.142 kb on + strand at 1611.142 kb on + strand at 1611.143 kb on - strand at 1611.143 kb on - strand at 1611.288 kb on + strand at 1611.302 kb on + strand at 1611.302 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.343 kb on - strand at 1611.343 kb on - strand at 1611.343 kb on - strand at 1611.343 kb on - strand at 1611.343 kb on - strand at 1611.343 kb on - strand at 1611.346 kb on + strand at 1611.347 kb on - strand at 1611.347 kb on - strand at 1611.347 kb on - strand at 1611.406 kb on + strand, within Psest_1511 at 1611.407 kb on - strand, within Psest_1511 at 1611.407 kb on - strand, within Psest_1511 at 1611.421 kb on + strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.604 kb on - strand at 1611.609 kb on + strand at 1611.648 kb on + strand at 1611.648 kb on + strand at 1611.648 kb on + strand at 1611.648 kb on + strand at 1611.649 kb on - strand at 1611.649 kb on - strand at 1611.649 kb on - strand at 1611.661 kb on + strand at 1611.661 kb on + strand at 1611.661 kb on + strand at 1611.661 kb on + strand at 1611.684 kb on + strand at 1611.685 kb on - strand at 1612.039 kb on + strand, within Psest_1512 at 1612.039 kb on + strand, within Psest_1512 at 1612.040 kb on - strand, within Psest_1512 at 1612.143 kb on + strand, within Psest_1512 at 1612.143 kb on + strand, within Psest_1512 at 1612.143 kb on + strand, within Psest_1512 at 1612.144 kb on - strand, within Psest_1512 at 1612.144 kb on - strand, within Psest_1512 at 1612.144 kb on - strand, within Psest_1512
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 75 mM remove 1,608,882 - Psest_1509 0.14 -0.7 1,608,882 - Psest_1509 0.14 -2.0 1,608,882 - Psest_1509 0.14 -3.0 1,608,882 - Psest_1509 0.14 -0.7 1,608,884 + Psest_1509 0.14 -1.3 1,608,885 - Psest_1509 0.14 -3.4 1,608,885 - Psest_1509 0.14 -1.4 1,608,885 - Psest_1509 0.14 -1.1 1,609,154 + Psest_1509 0.39 +0.1 1,609,155 - Psest_1509 0.39 -2.4 1,609,155 - Psest_1509 0.39 -3.5 1,609,155 - Psest_1509 0.39 +1.3 1,609,289 + Psest_1509 0.52 -1.5 1,609,289 + Psest_1509 0.52 -2.5 1,609,289 + Psest_1509 0.52 -2.5 1,609,290 - Psest_1509 0.52 -2.2 1,609,290 - Psest_1509 0.52 -1.6 1,609,290 - Psest_1509 0.52 -1.8 1,609,541 + Psest_1509 0.76 -0.1 1,609,541 + Psest_1509 0.76 -1.5 1,609,541 + Psest_1509 0.76 -1.0 1,609,541 + Psest_1509 0.76 -0.5 1,609,542 - Psest_1509 0.76 -1.8 1,609,542 - Psest_1509 0.76 -1.8 1,609,967 + -0.5 1,609,989 - Psest_1510 0.11 -1.1 1,609,989 - Psest_1510 0.11 -0.5 1,610,140 + Psest_1510 0.21 -0.5 1,610,141 - Psest_1510 0.21 -1.1 1,610,141 - Psest_1510 0.21 -2.1 1,610,141 - Psest_1510 0.21 +0.9 1,610,141 - Psest_1510 0.21 +0.5 1,610,169 - Psest_1510 0.23 -1.5 1,610,264 + Psest_1510 0.30 -0.7 1,610,264 + Psest_1510 0.30 -1.0 1,610,264 + Psest_1510 0.30 +0.5 1,610,264 + Psest_1510 0.30 -0.4 1,610,265 - Psest_1510 0.30 -2.5 1,610,265 - Psest_1510 0.30 -0.5 1,611,072 - Psest_1510 0.86 -1.7 1,611,072 - Psest_1510 0.86 -0.7 1,611,072 - Psest_1510 0.86 -1.0 1,611,142 + -1.7 1,611,142 + -2.6 1,611,143 - -1.1 1,611,143 - -0.4 1,611,288 + -1.9 1,611,302 + -1.4 1,611,302 + +0.1 1,611,342 + -1.9 1,611,342 + -0.0 1,611,342 + +0.5 1,611,342 + -1.2 1,611,342 + -0.7 1,611,342 + -1.5 1,611,342 + -1.0 1,611,342 + -3.3 1,611,342 + +1.6 1,611,342 + +0.1 1,611,342 + -1.2 1,611,342 + -1.4 1,611,342 + +1.4 1,611,342 + -1.0 1,611,343 - -0.4 1,611,343 - -0.7 1,611,343 - -0.2 1,611,343 - +0.2 1,611,343 - -0.4 1,611,343 - -2.7 1,611,346 + +1.1 1,611,347 - -0.4 1,611,347 - -1.6 1,611,347 - -0.1 1,611,406 + Psest_1511 0.11 -1.0 1,611,407 - Psest_1511 0.12 -2.9 1,611,407 - Psest_1511 0.12 -2.2 1,611,421 + Psest_1511 0.17 +8.2 1,611,422 - Psest_1511 0.17 +7.6 1,611,422 - Psest_1511 0.17 +7.3 1,611,422 - Psest_1511 0.17 +5.5 1,611,422 - Psest_1511 0.17 +7.4 1,611,422 - Psest_1511 0.17 +7.4 1,611,422 - Psest_1511 0.17 +7.3 1,611,422 - Psest_1511 0.17 +6.9 1,611,422 - Psest_1511 0.17 +9.1 1,611,604 - +8.0 1,611,609 + +8.6 1,611,648 + -2.2 1,611,648 + +0.6 1,611,648 + -2.6 1,611,648 + -2.4 1,611,649 - -0.9 1,611,649 - -2.6 1,611,649 - -1.0 1,611,661 + -1.0 1,611,661 + -1.1 1,611,661 + +0.2 1,611,661 + +0.5 1,611,684 + -0.1 1,611,685 - -0.3 1,612,039 + Psest_1512 0.36 -0.4 1,612,039 + Psest_1512 0.36 -1.6 1,612,040 - Psest_1512 0.36 -0.5 1,612,143 + Psest_1512 0.46 -1.0 1,612,143 + Psest_1512 0.46 +1.6 1,612,143 + Psest_1512 0.46 -1.5 1,612,144 - Psest_1512 0.46 -0.8 1,612,144 - Psest_1512 0.46 +3.5 1,612,144 - Psest_1512 0.46 +1.2
Or see this region's nucleotide sequence