Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1510

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1509 and Psest_1510 are separated by 41 nucleotidesPsest_1510 and Psest_1511 are separated by 110 nucleotidesPsest_1511 and Psest_1512 are separated by 21 nucleotides Psest_1509: Psest_1509 - quinolinate synthetase complex, A subunit, at 1,608,737 to 1,609,795 _1509 Psest_1510: Psest_1510 - Putative Zn-dependent protease, contains TPR repeats, at 1,609,837 to 1,611,267 _1510 Psest_1511: Psest_1511 - Predicted redox protein, regulator of disulfide bond formation, at 1,611,378 to 1,611,629 _1511 Psest_1512: Psest_1512 - Predicted permease, at 1,611,651 to 1,612,727 _1512 Position (kb) 1609 1610 1611 1612Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 1608.882 kb on - strand, within Psest_1509at 1608.882 kb on - strand, within Psest_1509at 1608.882 kb on - strand, within Psest_1509at 1608.882 kb on - strand, within Psest_1509at 1608.884 kb on + strand, within Psest_1509at 1608.885 kb on - strand, within Psest_1509at 1608.885 kb on - strand, within Psest_1509at 1608.885 kb on - strand, within Psest_1509at 1609.154 kb on + strand, within Psest_1509at 1609.155 kb on - strand, within Psest_1509at 1609.155 kb on - strand, within Psest_1509at 1609.155 kb on - strand, within Psest_1509at 1609.289 kb on + strand, within Psest_1509at 1609.289 kb on + strand, within Psest_1509at 1609.289 kb on + strand, within Psest_1509at 1609.290 kb on - strand, within Psest_1509at 1609.290 kb on - strand, within Psest_1509at 1609.290 kb on - strand, within Psest_1509at 1609.541 kb on + strand, within Psest_1509at 1609.541 kb on + strand, within Psest_1509at 1609.541 kb on + strand, within Psest_1509at 1609.541 kb on + strand, within Psest_1509at 1609.542 kb on - strand, within Psest_1509at 1609.542 kb on - strand, within Psest_1509at 1609.967 kb on + strandat 1609.989 kb on - strand, within Psest_1510at 1609.989 kb on - strand, within Psest_1510at 1610.140 kb on + strand, within Psest_1510at 1610.141 kb on - strand, within Psest_1510at 1610.141 kb on - strand, within Psest_1510at 1610.141 kb on - strand, within Psest_1510at 1610.141 kb on - strand, within Psest_1510at 1610.169 kb on - strand, within Psest_1510at 1610.264 kb on + strand, within Psest_1510at 1610.264 kb on + strand, within Psest_1510at 1610.264 kb on + strand, within Psest_1510at 1610.264 kb on + strand, within Psest_1510at 1610.265 kb on - strand, within Psest_1510at 1610.265 kb on - strand, within Psest_1510at 1611.072 kb on - strand, within Psest_1510at 1611.072 kb on - strand, within Psest_1510at 1611.072 kb on - strand, within Psest_1510at 1611.142 kb on + strandat 1611.142 kb on + strandat 1611.143 kb on - strandat 1611.143 kb on - strandat 1611.288 kb on + strandat 1611.302 kb on + strandat 1611.302 kb on + strandat 1611.342 kb on + strandat 1611.342 kb on + strandat 1611.342 kb on + strandat 1611.342 kb on + strandat 1611.342 kb on + strandat 1611.342 kb on + strandat 1611.342 kb on + strandat 1611.342 kb on + strandat 1611.342 kb on + strandat 1611.342 kb on + strandat 1611.342 kb on + strandat 1611.342 kb on + strandat 1611.342 kb on + strandat 1611.342 kb on + strandat 1611.343 kb on - strandat 1611.343 kb on - strandat 1611.343 kb on - strandat 1611.343 kb on - strandat 1611.343 kb on - strandat 1611.343 kb on - strandat 1611.346 kb on + strandat 1611.347 kb on - strandat 1611.347 kb on - strandat 1611.347 kb on - strandat 1611.406 kb on + strand, within Psest_1511at 1611.407 kb on - strand, within Psest_1511at 1611.407 kb on - strand, within Psest_1511at 1611.421 kb on + strand, within Psest_1511at 1611.422 kb on - strand, within Psest_1511at 1611.422 kb on - strand, within Psest_1511at 1611.422 kb on - strand, within Psest_1511at 1611.422 kb on - strand, within Psest_1511at 1611.422 kb on - strand, within Psest_1511at 1611.422 kb on - strand, within Psest_1511at 1611.422 kb on - strand, within Psest_1511at 1611.422 kb on - strand, within Psest_1511at 1611.604 kb on - strandat 1611.609 kb on + strandat 1611.648 kb on + strandat 1611.648 kb on + strandat 1611.648 kb on + strandat 1611.648 kb on + strandat 1611.649 kb on - strandat 1611.649 kb on - strandat 1611.649 kb on - strandat 1611.661 kb on + strandat 1611.661 kb on + strandat 1611.661 kb on + strandat 1611.661 kb on + strandat 1611.684 kb on + strandat 1611.685 kb on - strandat 1612.039 kb on + strand, within Psest_1512at 1612.039 kb on + strand, within Psest_1512at 1612.040 kb on - strand, within Psest_1512at 1612.143 kb on + strand, within Psest_1512at 1612.143 kb on + strand, within Psest_1512at 1612.143 kb on + strand, within Psest_1512at 1612.144 kb on - strand, within Psest_1512at 1612.144 kb on - strand, within Psest_1512at 1612.144 kb on - strand, within Psest_1512

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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1,608,882 - Psest_1509 0.14 -0.7
1,608,882 - Psest_1509 0.14 -2.0
1,608,882 - Psest_1509 0.14 -3.0
1,608,882 - Psest_1509 0.14 -0.7
1,608,884 + Psest_1509 0.14 -1.3
1,608,885 - Psest_1509 0.14 -3.4
1,608,885 - Psest_1509 0.14 -1.4
1,608,885 - Psest_1509 0.14 -1.1
1,609,154 + Psest_1509 0.39 +0.1
1,609,155 - Psest_1509 0.39 -2.4
1,609,155 - Psest_1509 0.39 -3.5
1,609,155 - Psest_1509 0.39 +1.3
1,609,289 + Psest_1509 0.52 -1.5
1,609,289 + Psest_1509 0.52 -2.5
1,609,289 + Psest_1509 0.52 -2.5
1,609,290 - Psest_1509 0.52 -2.2
1,609,290 - Psest_1509 0.52 -1.6
1,609,290 - Psest_1509 0.52 -1.8
1,609,541 + Psest_1509 0.76 -0.1
1,609,541 + Psest_1509 0.76 -1.5
1,609,541 + Psest_1509 0.76 -1.0
1,609,541 + Psest_1509 0.76 -0.5
1,609,542 - Psest_1509 0.76 -1.8
1,609,542 - Psest_1509 0.76 -1.8
1,609,967 + -0.5
1,609,989 - Psest_1510 0.11 -1.1
1,609,989 - Psest_1510 0.11 -0.5
1,610,140 + Psest_1510 0.21 -0.5
1,610,141 - Psest_1510 0.21 -1.1
1,610,141 - Psest_1510 0.21 -2.1
1,610,141 - Psest_1510 0.21 +0.9
1,610,141 - Psest_1510 0.21 +0.5
1,610,169 - Psest_1510 0.23 -1.5
1,610,264 + Psest_1510 0.30 -0.7
1,610,264 + Psest_1510 0.30 -1.0
1,610,264 + Psest_1510 0.30 +0.5
1,610,264 + Psest_1510 0.30 -0.4
1,610,265 - Psest_1510 0.30 -2.5
1,610,265 - Psest_1510 0.30 -0.5
1,611,072 - Psest_1510 0.86 -1.7
1,611,072 - Psest_1510 0.86 -0.7
1,611,072 - Psest_1510 0.86 -1.0
1,611,142 + -1.7
1,611,142 + -2.6
1,611,143 - -1.1
1,611,143 - -0.4
1,611,288 + -1.9
1,611,302 + -1.4
1,611,302 + +0.1
1,611,342 + -1.9
1,611,342 + -0.0
1,611,342 + +0.5
1,611,342 + -1.2
1,611,342 + -0.7
1,611,342 + -1.5
1,611,342 + -1.0
1,611,342 + -3.3
1,611,342 + +1.6
1,611,342 + +0.1
1,611,342 + -1.2
1,611,342 + -1.4
1,611,342 + +1.4
1,611,342 + -1.0
1,611,343 - -0.4
1,611,343 - -0.7
1,611,343 - -0.2
1,611,343 - +0.2
1,611,343 - -0.4
1,611,343 - -2.7
1,611,346 + +1.1
1,611,347 - -0.4
1,611,347 - -1.6
1,611,347 - -0.1
1,611,406 + Psest_1511 0.11 -1.0
1,611,407 - Psest_1511 0.12 -2.9
1,611,407 - Psest_1511 0.12 -2.2
1,611,421 + Psest_1511 0.17 +8.2
1,611,422 - Psest_1511 0.17 +7.6
1,611,422 - Psest_1511 0.17 +7.3
1,611,422 - Psest_1511 0.17 +5.5
1,611,422 - Psest_1511 0.17 +7.4
1,611,422 - Psest_1511 0.17 +7.4
1,611,422 - Psest_1511 0.17 +7.3
1,611,422 - Psest_1511 0.17 +6.9
1,611,422 - Psest_1511 0.17 +9.1
1,611,604 - +8.0
1,611,609 + +8.6
1,611,648 + -2.2
1,611,648 + +0.6
1,611,648 + -2.6
1,611,648 + -2.4
1,611,649 - -0.9
1,611,649 - -2.6
1,611,649 - -1.0
1,611,661 + -1.0
1,611,661 + -1.1
1,611,661 + +0.2
1,611,661 + +0.5
1,611,684 + -0.1
1,611,685 - -0.3
1,612,039 + Psest_1512 0.36 -0.4
1,612,039 + Psest_1512 0.36 -1.6
1,612,040 - Psest_1512 0.36 -0.5
1,612,143 + Psest_1512 0.46 -1.0
1,612,143 + Psest_1512 0.46 +1.6
1,612,143 + Psest_1512 0.46 -1.5
1,612,144 - Psest_1512 0.46 -0.8
1,612,144 - Psest_1512 0.46 +3.5
1,612,144 - Psest_1512 0.46 +1.2

Or see this region's nucleotide sequence