Experiment: Chlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1508 and Psest_1509 are separated by 244 nucleotides Psest_1509 and Psest_1510 are separated by 41 nucleotides
Psest_1508: Psest_1508 - succinate CoA transferases, at 1,606,996 to 1,608,492
_1508
Psest_1509: Psest_1509 - quinolinate synthetase complex, A subunit, at 1,608,737 to 1,609,795
_1509
Psest_1510: Psest_1510 - Putative Zn-dependent protease, contains TPR repeats, at 1,609,837 to 1,611,267
_1510
Position (kb)
1608
1609
1610 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1607.851 kb on + strand, within Psest_1508 at 1607.851 kb on + strand, within Psest_1508 at 1607.851 kb on + strand, within Psest_1508 at 1607.851 kb on + strand, within Psest_1508 at 1607.852 kb on - strand, within Psest_1508 at 1607.957 kb on + strand, within Psest_1508 at 1607.977 kb on + strand, within Psest_1508 at 1607.977 kb on + strand, within Psest_1508 at 1607.977 kb on + strand, within Psest_1508 at 1607.977 kb on + strand, within Psest_1508 at 1607.977 kb on + strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1608.082 kb on + strand, within Psest_1508 at 1608.082 kb on + strand, within Psest_1508 at 1608.082 kb on + strand, within Psest_1508 at 1608.082 kb on + strand, within Psest_1508 at 1608.083 kb on - strand, within Psest_1508 at 1608.083 kb on - strand, within Psest_1508 at 1608.083 kb on - strand, within Psest_1508 at 1608.382 kb on + strand at 1608.382 kb on + strand at 1608.382 kb on + strand at 1608.383 kb on - strand at 1608.532 kb on + strand at 1608.598 kb on - strand at 1608.600 kb on + strand at 1608.600 kb on + strand at 1608.691 kb on + strand at 1608.748 kb on - strand at 1608.882 kb on - strand, within Psest_1509 at 1608.882 kb on - strand, within Psest_1509 at 1608.882 kb on - strand, within Psest_1509 at 1608.882 kb on - strand, within Psest_1509 at 1608.884 kb on + strand, within Psest_1509 at 1608.885 kb on - strand, within Psest_1509 at 1608.885 kb on - strand, within Psest_1509 at 1608.885 kb on - strand, within Psest_1509 at 1609.154 kb on + strand, within Psest_1509 at 1609.155 kb on - strand, within Psest_1509 at 1609.155 kb on - strand, within Psest_1509 at 1609.155 kb on - strand, within Psest_1509 at 1609.289 kb on + strand, within Psest_1509 at 1609.289 kb on + strand, within Psest_1509 at 1609.289 kb on + strand, within Psest_1509 at 1609.290 kb on - strand, within Psest_1509 at 1609.290 kb on - strand, within Psest_1509 at 1609.290 kb on - strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.542 kb on - strand, within Psest_1509 at 1609.542 kb on - strand, within Psest_1509 at 1609.967 kb on + strand at 1609.989 kb on - strand, within Psest_1510 at 1609.989 kb on - strand, within Psest_1510 at 1610.140 kb on + strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.169 kb on - strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.265 kb on - strand, within Psest_1510 at 1610.265 kb on - strand, within Psest_1510
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 75 mM remove 1,607,851 + Psest_1508 0.57 -3.3 1,607,851 + Psest_1508 0.57 +0.4 1,607,851 + Psest_1508 0.57 +1.0 1,607,851 + Psest_1508 0.57 -2.3 1,607,852 - Psest_1508 0.57 -0.3 1,607,957 + Psest_1508 0.64 -2.3 1,607,977 + Psest_1508 0.66 -0.4 1,607,977 + Psest_1508 0.66 -0.1 1,607,977 + Psest_1508 0.66 -1.6 1,607,977 + Psest_1508 0.66 +1.4 1,607,977 + Psest_1508 0.66 -0.6 1,607,978 - Psest_1508 0.66 -0.9 1,607,978 - Psest_1508 0.66 -2.3 1,607,978 - Psest_1508 0.66 +2.9 1,607,978 - Psest_1508 0.66 -1.8 1,607,978 - Psest_1508 0.66 -0.8 1,607,978 - Psest_1508 0.66 -0.0 1,607,978 - Psest_1508 0.66 -1.9 1,607,978 - Psest_1508 0.66 +0.7 1,608,082 + Psest_1508 0.73 +1.7 1,608,082 + Psest_1508 0.73 -3.0 1,608,082 + Psest_1508 0.73 -1.0 1,608,082 + Psest_1508 0.73 -2.3 1,608,083 - Psest_1508 0.73 -1.9 1,608,083 - Psest_1508 0.73 -2.8 1,608,083 - Psest_1508 0.73 -1.6 1,608,382 + +1.6 1,608,382 + -0.5 1,608,382 + -3.1 1,608,383 - +1.0 1,608,532 + -0.4 1,608,598 - -2.5 1,608,600 + -0.9 1,608,600 + -1.2 1,608,691 + -1.0 1,608,748 - +0.5 1,608,882 - Psest_1509 0.14 -0.7 1,608,882 - Psest_1509 0.14 -2.0 1,608,882 - Psest_1509 0.14 -3.0 1,608,882 - Psest_1509 0.14 -0.7 1,608,884 + Psest_1509 0.14 -1.3 1,608,885 - Psest_1509 0.14 -3.4 1,608,885 - Psest_1509 0.14 -1.4 1,608,885 - Psest_1509 0.14 -1.1 1,609,154 + Psest_1509 0.39 +0.1 1,609,155 - Psest_1509 0.39 -2.4 1,609,155 - Psest_1509 0.39 -3.5 1,609,155 - Psest_1509 0.39 +1.3 1,609,289 + Psest_1509 0.52 -1.5 1,609,289 + Psest_1509 0.52 -2.5 1,609,289 + Psest_1509 0.52 -2.5 1,609,290 - Psest_1509 0.52 -2.2 1,609,290 - Psest_1509 0.52 -1.6 1,609,290 - Psest_1509 0.52 -1.8 1,609,541 + Psest_1509 0.76 -0.1 1,609,541 + Psest_1509 0.76 -1.5 1,609,541 + Psest_1509 0.76 -1.0 1,609,541 + Psest_1509 0.76 -0.5 1,609,542 - Psest_1509 0.76 -1.8 1,609,542 - Psest_1509 0.76 -1.8 1,609,967 + -0.5 1,609,989 - Psest_1510 0.11 -1.1 1,609,989 - Psest_1510 0.11 -0.5 1,610,140 + Psest_1510 0.21 -0.5 1,610,141 - Psest_1510 0.21 -1.1 1,610,141 - Psest_1510 0.21 -2.1 1,610,141 - Psest_1510 0.21 +0.9 1,610,141 - Psest_1510 0.21 +0.5 1,610,169 - Psest_1510 0.23 -1.5 1,610,264 + Psest_1510 0.30 -0.7 1,610,264 + Psest_1510 0.30 -1.0 1,610,264 + Psest_1510 0.30 +0.5 1,610,264 + Psest_1510 0.30 -0.4 1,610,265 - Psest_1510 0.30 -2.5 1,610,265 - Psest_1510 0.30 -0.5
Or see this region's nucleotide sequence