Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1505

Experiment: Chlorate 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1503 and Psest_1504 are separated by 6 nucleotidesPsest_1504 and Psest_1505 are separated by 89 nucleotidesPsest_1505 and Psest_1506 are separated by 51 nucleotidesPsest_1506 and Psest_1507 are separated by 96 nucleotides Psest_1503: Psest_1503 - peptidoglycan-associated lipoprotein, at 1,603,808 to 1,604,311 _1503 Psest_1504: Psest_1504 - tol-pal system protein YbgF, at 1,604,318 to 1,605,133 _1504 Psest_1505: Psest_1505 - Organic radical activating enzymes, at 1,605,223 to 1,605,897 _1505 Psest_1506: Psest_1506 - queuosine biosynthesis protein QueC, at 1,605,949 to 1,606,623 _1506 Psest_1507: Psest_1507 - tRNA_Lys_TTT, at 1,606,720 to 1,606,795 _1507 Position (kb) 1605 1606Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1604.728 kb on + strand, within Psest_1504at 1604.780 kb on + strand, within Psest_1504at 1604.781 kb on - strand, within Psest_1504at 1604.861 kb on + strand, within Psest_1504at 1605.005 kb on + strand, within Psest_1504at 1605.005 kb on + strand, within Psest_1504at 1605.007 kb on + strand, within Psest_1504at 1605.007 kb on + strand, within Psest_1504at 1605.007 kb on + strand, within Psest_1504at 1605.007 kb on + strand, within Psest_1504at 1605.008 kb on - strand, within Psest_1504at 1605.158 kb on - strandat 1605.256 kb on - strandat 1605.321 kb on + strand, within Psest_1505at 1605.380 kb on - strand, within Psest_1505at 1605.439 kb on + strand, within Psest_1505at 1605.440 kb on - strand, within Psest_1505at 1605.440 kb on - strand, within Psest_1505at 1605.974 kb on + strandat 1605.974 kb on + strandat 1606.039 kb on + strand, within Psest_1506at 1606.040 kb on - strand, within Psest_1506at 1606.041 kb on + strand, within Psest_1506at 1606.041 kb on + strand, within Psest_1506at 1606.041 kb on + strand, within Psest_1506at 1606.041 kb on + strand, within Psest_1506at 1606.112 kb on + strand, within Psest_1506at 1606.112 kb on + strand, within Psest_1506at 1606.113 kb on - strand, within Psest_1506at 1606.113 kb on - strand, within Psest_1506at 1606.228 kb on + strand, within Psest_1506at 1606.228 kb on + strand, within Psest_1506at 1606.228 kb on + strand, within Psest_1506at 1606.228 kb on + strand, within Psest_1506at 1606.228 kb on + strand, within Psest_1506at 1606.228 kb on + strand, within Psest_1506at 1606.229 kb on - strand, within Psest_1506at 1606.229 kb on - strand, within Psest_1506at 1606.229 kb on - strand, within Psest_1506at 1606.229 kb on - strand, within Psest_1506at 1606.300 kb on - strand, within Psest_1506at 1606.327 kb on + strand, within Psest_1506at 1606.377 kb on + strand, within Psest_1506at 1606.885 kb on + strandat 1606.885 kb on + strandat 1606.886 kb on - strandat 1606.897 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
remove
1,604,728 + Psest_1504 0.50 -1.1
1,604,780 + Psest_1504 0.57 -2.2
1,604,781 - Psest_1504 0.57 -0.7
1,604,861 + Psest_1504 0.67 +1.4
1,605,005 + Psest_1504 0.84 +0.4
1,605,005 + Psest_1504 0.84 +4.0
1,605,007 + Psest_1504 0.84 -0.9
1,605,007 + Psest_1504 0.84 -2.1
1,605,007 + Psest_1504 0.84 -1.3
1,605,007 + Psest_1504 0.84 -1.1
1,605,008 - Psest_1504 0.85 +0.6
1,605,158 - -1.7
1,605,256 - -0.4
1,605,321 + Psest_1505 0.15 -0.6
1,605,380 - Psest_1505 0.23 -1.8
1,605,439 + Psest_1505 0.32 -1.2
1,605,440 - Psest_1505 0.32 -0.7
1,605,440 - Psest_1505 0.32 -0.7
1,605,974 + -1.6
1,605,974 + -1.7
1,606,039 + Psest_1506 0.13 -0.7
1,606,040 - Psest_1506 0.13 -1.9
1,606,041 + Psest_1506 0.14 -1.1
1,606,041 + Psest_1506 0.14 +0.4
1,606,041 + Psest_1506 0.14 +0.1
1,606,041 + Psest_1506 0.14 -0.9
1,606,112 + Psest_1506 0.24 -2.3
1,606,112 + Psest_1506 0.24 -0.4
1,606,113 - Psest_1506 0.24 -3.4
1,606,113 - Psest_1506 0.24 +1.4
1,606,228 + Psest_1506 0.41 -0.6
1,606,228 + Psest_1506 0.41 +2.4
1,606,228 + Psest_1506 0.41 -1.1
1,606,228 + Psest_1506 0.41 +0.1
1,606,228 + Psest_1506 0.41 -0.7
1,606,228 + Psest_1506 0.41 +1.4
1,606,229 - Psest_1506 0.41 -0.7
1,606,229 - Psest_1506 0.41 +0.9
1,606,229 - Psest_1506 0.41 -1.6
1,606,229 - Psest_1506 0.41 +0.4
1,606,300 - Psest_1506 0.52 +0.9
1,606,327 + Psest_1506 0.56 +0.9
1,606,377 + Psest_1506 0.63 -0.1
1,606,885 + -1.0
1,606,885 + +0.0
1,606,886 - -1.7
1,606,897 + -0.9

Or see this region's nucleotide sequence