Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1477

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1476 and Psest_1477 overlap by 4 nucleotidesPsest_1477 and Psest_1478 are separated by 50 nucleotidesPsest_1478 and Psest_1479 overlap by 8 nucleotides Psest_1476: Psest_1476 - Predicted permease, at 1,581,244 to 1,582,341 _1476 Psest_1477: Psest_1477 - DnaA regulatory inactivator Hda, at 1,582,338 to 1,583,042 _1477 Psest_1478: Psest_1478 - Predicted membrane protein, at 1,583,093 to 1,583,503 _1478 Psest_1479: Psest_1479 - NAD(P)H:quinone oxidoreductase, type IV, at 1,583,496 to 1,584,101 _1479 Position (kb) 1582 1583 1584Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1581.361 kb on + strand, within Psest_1476at 1581.362 kb on - strand, within Psest_1476at 1581.512 kb on - strand, within Psest_1476at 1581.645 kb on + strand, within Psest_1476at 1581.646 kb on - strand, within Psest_1476at 1581.665 kb on + strand, within Psest_1476at 1581.681 kb on + strand, within Psest_1476at 1581.682 kb on - strand, within Psest_1476at 1581.748 kb on + strand, within Psest_1476at 1581.748 kb on + strand, within Psest_1476at 1581.748 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.908 kb on - strand, within Psest_1476at 1581.908 kb on - strand, within Psest_1476at 1581.908 kb on - strand, within Psest_1476at 1581.908 kb on - strand, within Psest_1476at 1581.921 kb on + strand, within Psest_1476at 1581.921 kb on + strand, within Psest_1476at 1581.921 kb on + strand, within Psest_1476at 1581.921 kb on + strand, within Psest_1476at 1581.922 kb on - strand, within Psest_1476at 1581.922 kb on - strand, within Psest_1476at 1581.922 kb on - strand, within Psest_1476at 1581.922 kb on - strand, within Psest_1476at 1581.988 kb on + strand, within Psest_1476at 1581.988 kb on + strand, within Psest_1476at 1581.988 kb on + strand, within Psest_1476at 1581.988 kb on + strand, within Psest_1476at 1581.988 kb on + strand, within Psest_1476at 1581.989 kb on - strand, within Psest_1476at 1582.082 kb on + strand, within Psest_1476at 1582.082 kb on + strand, within Psest_1476at 1582.083 kb on - strand, within Psest_1476at 1582.083 kb on - strand, within Psest_1476at 1582.083 kb on - strand, within Psest_1476at 1582.086 kb on + strand, within Psest_1476at 1582.276 kb on + strandat 1582.277 kb on - strandat 1583.142 kb on + strand, within Psest_1478at 1583.142 kb on + strand, within Psest_1478at 1583.142 kb on + strand, within Psest_1478at 1583.142 kb on + strand, within Psest_1478at 1583.142 kb on + strand, within Psest_1478at 1583.142 kb on + strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.196 kb on + strand, within Psest_1478at 1583.196 kb on + strand, within Psest_1478at 1583.196 kb on + strand, within Psest_1478at 1583.196 kb on + strand, within Psest_1478at 1583.197 kb on - strand, within Psest_1478at 1583.244 kb on + strand, within Psest_1478at 1583.244 kb on + strand, within Psest_1478at 1583.244 kb on + strand, within Psest_1478at 1583.244 kb on + strand, within Psest_1478at 1583.257 kb on + strand, within Psest_1478at 1583.378 kb on + strand, within Psest_1478at 1583.488 kb on + strandat 1583.489 kb on - strandat 1583.667 kb on - strand, within Psest_1479at 1583.667 kb on - strand, within Psest_1479at 1583.669 kb on - strand, within Psest_1479at 1583.833 kb on + strand, within Psest_1479at 1583.833 kb on + strand, within Psest_1479at 1583.833 kb on + strand, within Psest_1479at 1583.834 kb on - strand, within Psest_1479at 1583.834 kb on - strand, within Psest_1479at 1583.834 kb on - strand, within Psest_1479at 1583.921 kb on - strand, within Psest_1479

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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1,581,361 + Psest_1476 0.11 -1.9
1,581,362 - Psest_1476 0.11 +2.0
1,581,512 - Psest_1476 0.24 -1.7
1,581,645 + Psest_1476 0.37 -0.9
1,581,646 - Psest_1476 0.37 +0.9
1,581,665 + Psest_1476 0.38 -2.2
1,581,681 + Psest_1476 0.40 -3.3
1,581,682 - Psest_1476 0.40 +1.0
1,581,748 + Psest_1476 0.46 -1.3
1,581,748 + Psest_1476 0.46 -1.0
1,581,748 + Psest_1476 0.46 -2.3
1,581,907 + Psest_1476 0.60 +0.1
1,581,907 + Psest_1476 0.60 -0.2
1,581,907 + Psest_1476 0.60 -1.4
1,581,907 + Psest_1476 0.60 +2.2
1,581,907 + Psest_1476 0.60 -4.1
1,581,907 + Psest_1476 0.60 -0.4
1,581,907 + Psest_1476 0.60 -0.2
1,581,907 + Psest_1476 0.60 +0.4
1,581,907 + Psest_1476 0.60 -1.4
1,581,907 + Psest_1476 0.60 -0.4
1,581,907 + Psest_1476 0.60 -0.7
1,581,907 + Psest_1476 0.60 -1.5
1,581,907 + Psest_1476 0.60 -0.2
1,581,907 + Psest_1476 0.60 +0.1
1,581,908 - Psest_1476 0.60 -0.5
1,581,908 - Psest_1476 0.60 +2.6
1,581,908 - Psest_1476 0.60 +0.1
1,581,908 - Psest_1476 0.60 -2.5
1,581,921 + Psest_1476 0.62 -1.6
1,581,921 + Psest_1476 0.62 +2.0
1,581,921 + Psest_1476 0.62 -0.1
1,581,921 + Psest_1476 0.62 -1.9
1,581,922 - Psest_1476 0.62 +0.4
1,581,922 - Psest_1476 0.62 -1.2
1,581,922 - Psest_1476 0.62 -1.0
1,581,922 - Psest_1476 0.62 -1.7
1,581,988 + Psest_1476 0.68 +0.5
1,581,988 + Psest_1476 0.68 +0.5
1,581,988 + Psest_1476 0.68 +0.8
1,581,988 + Psest_1476 0.68 -0.6
1,581,988 + Psest_1476 0.68 -1.3
1,581,989 - Psest_1476 0.68 -0.2
1,582,082 + Psest_1476 0.76 +1.2
1,582,082 + Psest_1476 0.76 -0.2
1,582,083 - Psest_1476 0.76 -1.3
1,582,083 - Psest_1476 0.76 -2.0
1,582,083 - Psest_1476 0.76 -1.7
1,582,086 + Psest_1476 0.77 -1.3
1,582,276 + -0.2
1,582,277 - -1.4
1,583,142 + Psest_1478 0.12 +0.4
1,583,142 + Psest_1478 0.12 +0.3
1,583,142 + Psest_1478 0.12 -1.2
1,583,142 + Psest_1478 0.12 +0.6
1,583,142 + Psest_1478 0.12 -0.2
1,583,142 + Psest_1478 0.12 -3.1
1,583,143 - Psest_1478 0.12 +1.3
1,583,143 - Psest_1478 0.12 +0.2
1,583,143 - Psest_1478 0.12 +0.1
1,583,143 - Psest_1478 0.12 -1.5
1,583,143 - Psest_1478 0.12 -0.9
1,583,143 - Psest_1478 0.12 -0.7
1,583,143 - Psest_1478 0.12 -1.7
1,583,143 - Psest_1478 0.12 +0.1
1,583,143 - Psest_1478 0.12 -3.0
1,583,196 + Psest_1478 0.25 -2.0
1,583,196 + Psest_1478 0.25 -1.7
1,583,196 + Psest_1478 0.25 -2.5
1,583,196 + Psest_1478 0.25 -2.2
1,583,197 - Psest_1478 0.25 -2.6
1,583,244 + Psest_1478 0.37 -2.9
1,583,244 + Psest_1478 0.37 -1.7
1,583,244 + Psest_1478 0.37 -1.4
1,583,244 + Psest_1478 0.37 -3.1
1,583,257 + Psest_1478 0.40 -3.2
1,583,378 + Psest_1478 0.69 -1.9
1,583,488 + -1.1
1,583,489 - -2.0
1,583,667 - Psest_1479 0.28 +0.3
1,583,667 - Psest_1479 0.28 -1.0
1,583,669 - Psest_1479 0.29 -2.2
1,583,833 + Psest_1479 0.56 -2.4
1,583,833 + Psest_1479 0.56 -1.7
1,583,833 + Psest_1479 0.56 -0.7
1,583,834 - Psest_1479 0.56 +1.4
1,583,834 - Psest_1479 0.56 +0.1
1,583,834 - Psest_1479 0.56 +1.7
1,583,921 - Psest_1479 0.70 +0.3

Or see this region's nucleotide sequence