Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1238

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1237 and Psest_1238 are separated by 68 nucleotidesPsest_1238 and Psest_1239 are separated by 97 nucleotidesPsest_1239 and Psest_1240 are separated by 496 nucleotides Psest_1237: Psest_1237 - Predicted permeases, at 1,346,403 to 1,347,464 _1237 Psest_1238: Psest_1238 - Predicted membrane protein/domain, at 1,347,533 to 1,348,030 _1238 Psest_1239: Psest_1239 - Cold shock proteins, at 1,348,128 to 1,348,340 _1239 Psest_1240: Psest_1240 - tRNA_Leu_CAA, at 1,348,837 to 1,348,923 _1240 Position (kb) 1347 1348 1349Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1347.481 kb on + strandat 1347.481 kb on + strandat 1347.481 kb on + strandat 1347.481 kb on + strandat 1347.481 kb on + strandat 1347.481 kb on + strandat 1347.481 kb on + strandat 1347.482 kb on - strandat 1347.535 kb on - strandat 1347.631 kb on - strand, within Psest_1238at 1347.692 kb on + strand, within Psest_1238at 1347.879 kb on + strand, within Psest_1238at 1347.879 kb on + strand, within Psest_1238at 1347.879 kb on + strand, within Psest_1238at 1347.880 kb on - strand, within Psest_1238at 1347.880 kb on - strand, within Psest_1238at 1347.880 kb on - strand, within Psest_1238at 1347.880 kb on - strand, within Psest_1238at 1347.880 kb on - strand, within Psest_1238at 1347.893 kb on + strand, within Psest_1238at 1347.893 kb on + strand, within Psest_1238at 1347.894 kb on - strand, within Psest_1238at 1347.954 kb on + strand, within Psest_1238at 1347.954 kb on + strand, within Psest_1238at 1347.954 kb on + strand, within Psest_1238at 1347.954 kb on + strand, within Psest_1238at 1347.955 kb on - strand, within Psest_1238at 1347.955 kb on - strand, within Psest_1238at 1347.955 kb on - strand, within Psest_1238at 1347.955 kb on - strand, within Psest_1238at 1348.046 kb on - strandat 1348.046 kb on - strandat 1348.065 kb on + strandat 1348.348 kb on + strandat 1348.349 kb on - strandat 1348.349 kb on - strandat 1348.367 kb on + strandat 1348.367 kb on + strandat 1348.367 kb on + strandat 1348.368 kb on - strandat 1348.383 kb on + strandat 1348.414 kb on - strandat 1348.448 kb on + strandat 1348.449 kb on - strandat 1348.449 kb on - strandat 1348.449 kb on - strandat 1348.449 kb on - strandat 1348.449 kb on - strandat 1348.449 kb on - strandat 1348.449 kb on - strandat 1348.503 kb on + strandat 1348.503 kb on + strandat 1348.503 kb on + strandat 1348.503 kb on + strandat 1348.694 kb on - strandat 1348.694 kb on - strandat 1348.814 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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1,347,481 + -2.1
1,347,481 + -2.7
1,347,481 + -0.5
1,347,481 + -0.4
1,347,481 + -2.0
1,347,481 + -0.7
1,347,481 + -0.3
1,347,482 - -1.2
1,347,535 - -1.1
1,347,631 - Psest_1238 0.20 -3.1
1,347,692 + Psest_1238 0.32 -2.1
1,347,879 + Psest_1238 0.69 -0.4
1,347,879 + Psest_1238 0.69 -3.3
1,347,879 + Psest_1238 0.69 -1.1
1,347,880 - Psest_1238 0.70 +0.5
1,347,880 - Psest_1238 0.70 -2.4
1,347,880 - Psest_1238 0.70 -1.9
1,347,880 - Psest_1238 0.70 -2.3
1,347,880 - Psest_1238 0.70 -1.5
1,347,893 + Psest_1238 0.72 +1.5
1,347,893 + Psest_1238 0.72 -2.0
1,347,894 - Psest_1238 0.72 -3.4
1,347,954 + Psest_1238 0.85 -1.4
1,347,954 + Psest_1238 0.85 -1.7
1,347,954 + Psest_1238 0.85 -0.4
1,347,954 + Psest_1238 0.85 -2.7
1,347,955 - Psest_1238 0.85 -0.6
1,347,955 - Psest_1238 0.85 -3.1
1,347,955 - Psest_1238 0.85 -2.3
1,347,955 - Psest_1238 0.85 -2.6
1,348,046 - -0.7
1,348,046 - -2.7
1,348,065 + -0.5
1,348,348 + -3.4
1,348,349 - -2.2
1,348,349 - -0.7
1,348,367 + -2.0
1,348,367 + -0.5
1,348,367 + -0.5
1,348,368 - +1.5
1,348,383 + -2.8
1,348,414 - -1.2
1,348,448 + -1.7
1,348,449 - +2.5
1,348,449 - -0.4
1,348,449 - -1.9
1,348,449 - -1.1
1,348,449 - -2.2
1,348,449 - -3.1
1,348,449 - +0.5
1,348,503 + -1.3
1,348,503 + -1.4
1,348,503 + -1.2
1,348,503 + +0.6
1,348,694 - -0.5
1,348,694 - +0.9
1,348,814 - -1.8

Or see this region's nucleotide sequence