Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1119

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1117 and Psest_1118 are separated by 57 nucleotidesPsest_1118 and Psest_1119 are separated by 83 nucleotidesPsest_1119 and Psest_1120 are separated by 2 nucleotidesPsest_1120 and Psest_1121 are separated by 249 nucleotides Psest_1117: Psest_1117 - Lipid A 3-O-deacylase (PagL)., at 1,211,410 to 1,211,928 _1117 Psest_1118: Psest_1118 - Predicted Fe-S-cluster oxidoreductase, at 1,211,986 to 1,212,297 _1118 Psest_1119: Psest_1119 - uracil-xanthine permease, at 1,212,381 to 1,213,640 _1119 Psest_1120: Psest_1120 - uracil phosphoribosyltransferase, at 1,213,643 to 1,214,281 _1120 Psest_1121: Psest_1121 - Hypoxanthine-guanine phosphoribosyltransferase, at 1,214,531 to 1,215,088 _1121 Position (kb) 1212 1213 1214Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1211.395 kb on + strandat 1211.395 kb on + strandat 1211.397 kb on + strandat 1211.397 kb on + strandat 1211.397 kb on + strandat 1211.398 kb on - strandat 1211.398 kb on - strandat 1211.617 kb on + strand, within Psest_1117at 1211.618 kb on - strand, within Psest_1117at 1211.677 kb on + strand, within Psest_1117at 1211.677 kb on + strand, within Psest_1117at 1211.678 kb on - strand, within Psest_1117at 1211.707 kb on + strand, within Psest_1117at 1211.707 kb on + strand, within Psest_1117at 1211.707 kb on + strand, within Psest_1117at 1211.745 kb on + strand, within Psest_1117at 1211.855 kb on - strand, within Psest_1117at 1211.926 kb on + strandat 1211.926 kb on + strandat 1211.926 kb on + strandat 1212.077 kb on + strand, within Psest_1118at 1212.078 kb on - strand, within Psest_1118at 1212.078 kb on - strand, within Psest_1118at 1212.315 kb on + strandat 1212.315 kb on + strandat 1212.378 kb on + strandat 1212.378 kb on + strandat 1212.379 kb on - strandat 1212.379 kb on - strandat 1212.379 kb on - strandat 1212.379 kb on - strandat 1212.379 kb on - strandat 1212.379 kb on - strandat 1212.379 kb on - strandat 1212.745 kb on + strand, within Psest_1119at 1212.745 kb on + strand, within Psest_1119at 1212.745 kb on + strand, within Psest_1119at 1212.745 kb on + strand, within Psest_1119at 1212.746 kb on - strand, within Psest_1119at 1212.746 kb on - strand, within Psest_1119at 1212.746 kb on - strand, within Psest_1119at 1212.746 kb on - strand, within Psest_1119at 1212.746 kb on - strand, within Psest_1119at 1212.746 kb on - strand, within Psest_1119at 1212.746 kb on - strand, within Psest_1119at 1212.877 kb on + strand, within Psest_1119at 1212.877 kb on + strand, within Psest_1119at 1212.877 kb on + strand, within Psest_1119at 1212.877 kb on + strand, within Psest_1119at 1212.878 kb on - strand, within Psest_1119at 1212.878 kb on - strand, within Psest_1119at 1212.878 kb on - strand, within Psest_1119at 1212.878 kb on - strand, within Psest_1119at 1212.878 kb on - strand, within Psest_1119at 1212.998 kb on + strand, within Psest_1119at 1213.142 kb on + strand, within Psest_1119at 1213.143 kb on - strand, within Psest_1119at 1213.354 kb on + strand, within Psest_1119at 1213.354 kb on + strand, within Psest_1119at 1213.354 kb on + strand, within Psest_1119at 1213.354 kb on + strand, within Psest_1119at 1213.354 kb on + strand, within Psest_1119at 1213.355 kb on - strand, within Psest_1119at 1213.355 kb on - strand, within Psest_1119at 1213.355 kb on - strand, within Psest_1119at 1213.355 kb on - strand, within Psest_1119at 1213.355 kb on - strand, within Psest_1119at 1213.355 kb on - strand, within Psest_1119at 1213.355 kb on - strand, within Psest_1119at 1213.355 kb on - strand, within Psest_1119at 1213.355 kb on - strand, within Psest_1119at 1213.355 kb on - strand, within Psest_1119at 1213.355 kb on - strand, within Psest_1119at 1213.355 kb on - strand, within Psest_1119at 1213.478 kb on + strand, within Psest_1119at 1213.478 kb on + strand, within Psest_1119at 1213.479 kb on - strand, within Psest_1119at 1213.479 kb on - strand, within Psest_1119at 1213.479 kb on - strand, within Psest_1119at 1213.584 kb on + strandat 1213.707 kb on + strand, within Psest_1120at 1213.850 kb on - strand, within Psest_1120at 1213.944 kb on + strand, within Psest_1120at 1213.945 kb on - strand, within Psest_1120at 1213.945 kb on - strand, within Psest_1120at 1214.128 kb on - strand, within Psest_1120at 1214.160 kb on + strand, within Psest_1120at 1214.160 kb on + strand, within Psest_1120at 1214.161 kb on - strand, within Psest_1120at 1214.161 kb on - strand, within Psest_1120at 1214.161 kb on - strand, within Psest_1120at 1214.161 kb on - strand, within Psest_1120at 1214.161 kb on - strand, within Psest_1120at 1214.161 kb on - strand, within Psest_1120at 1214.302 kb on + strandat 1214.313 kb on - strandat 1214.391 kb on - strandat 1214.391 kb on - strandat 1214.501 kb on - strandat 1214.585 kb on + strandat 1214.585 kb on + strandat 1214.601 kb on + strand, within Psest_1121at 1214.601 kb on + strand, within Psest_1121at 1214.601 kb on + strand, within Psest_1121at 1214.601 kb on + strand, within Psest_1121at 1214.602 kb on - strand, within Psest_1121at 1214.602 kb on - strand, within Psest_1121at 1214.602 kb on - strand, within Psest_1121at 1214.602 kb on - strand, within Psest_1121

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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1,211,395 + -0.9
1,211,395 + +0.8
1,211,397 + +0.7
1,211,397 + +0.7
1,211,397 + -2.4
1,211,398 - +0.7
1,211,398 - +1.4
1,211,617 + Psest_1117 0.40 +2.4
1,211,618 - Psest_1117 0.40 +0.4
1,211,677 + Psest_1117 0.51 +2.4
1,211,677 + Psest_1117 0.51 -0.9
1,211,678 - Psest_1117 0.52 +0.6
1,211,707 + Psest_1117 0.57 -0.3
1,211,707 + Psest_1117 0.57 -1.5
1,211,707 + Psest_1117 0.57 -1.9
1,211,745 + Psest_1117 0.65 +2.7
1,211,855 - Psest_1117 0.86 -1.2
1,211,926 + +0.1
1,211,926 + +0.7
1,211,926 + +1.1
1,212,077 + Psest_1118 0.29 -0.7
1,212,078 - Psest_1118 0.29 -2.6
1,212,078 - Psest_1118 0.29 +1.2
1,212,315 + +5.7
1,212,315 + +0.3
1,212,378 + +1.7
1,212,378 + -2.0
1,212,379 - +1.7
1,212,379 - -1.7
1,212,379 - +0.3
1,212,379 - -0.3
1,212,379 - +1.9
1,212,379 - -3.5
1,212,379 - -0.2
1,212,745 + Psest_1119 0.29 +2.0
1,212,745 + Psest_1119 0.29 +1.7
1,212,745 + Psest_1119 0.29 -2.0
1,212,745 + Psest_1119 0.29 -1.2
1,212,746 - Psest_1119 0.29 +1.1
1,212,746 - Psest_1119 0.29 -0.1
1,212,746 - Psest_1119 0.29 +2.1
1,212,746 - Psest_1119 0.29 +1.8
1,212,746 - Psest_1119 0.29 +2.2
1,212,746 - Psest_1119 0.29 -0.1
1,212,746 - Psest_1119 0.29 +0.3
1,212,877 + Psest_1119 0.39 +1.0
1,212,877 + Psest_1119 0.39 +1.0
1,212,877 + Psest_1119 0.39 +1.9
1,212,877 + Psest_1119 0.39 +2.2
1,212,878 - Psest_1119 0.39 +0.1
1,212,878 - Psest_1119 0.39 +0.5
1,212,878 - Psest_1119 0.39 +0.2
1,212,878 - Psest_1119 0.39 +2.2
1,212,878 - Psest_1119 0.39 -1.6
1,212,998 + Psest_1119 0.49 +0.0
1,213,142 + Psest_1119 0.60 +1.0
1,213,143 - Psest_1119 0.60 +1.2
1,213,354 + Psest_1119 0.77 -1.0
1,213,354 + Psest_1119 0.77 +0.5
1,213,354 + Psest_1119 0.77 +0.9
1,213,354 + Psest_1119 0.77 -1.6
1,213,354 + Psest_1119 0.77 -0.6
1,213,355 - Psest_1119 0.77 +0.8
1,213,355 - Psest_1119 0.77 +1.1
1,213,355 - Psest_1119 0.77 +0.7
1,213,355 - Psest_1119 0.77 +0.5
1,213,355 - Psest_1119 0.77 +1.8
1,213,355 - Psest_1119 0.77 -3.6
1,213,355 - Psest_1119 0.77 -0.7
1,213,355 - Psest_1119 0.77 +1.6
1,213,355 - Psest_1119 0.77 +0.7
1,213,355 - Psest_1119 0.77 +1.0
1,213,355 - Psest_1119 0.77 -1.7
1,213,355 - Psest_1119 0.77 +0.3
1,213,478 + Psest_1119 0.87 +0.8
1,213,478 + Psest_1119 0.87 -1.2
1,213,479 - Psest_1119 0.87 +0.9
1,213,479 - Psest_1119 0.87 +0.3
1,213,479 - Psest_1119 0.87 -2.0
1,213,584 + +2.7
1,213,707 + Psest_1120 0.10 -0.3
1,213,850 - Psest_1120 0.32 -0.6
1,213,944 + Psest_1120 0.47 +0.8
1,213,945 - Psest_1120 0.47 +1.1
1,213,945 - Psest_1120 0.47 -0.1
1,214,128 - Psest_1120 0.76 +1.7
1,214,160 + Psest_1120 0.81 -1.9
1,214,160 + Psest_1120 0.81 -0.8
1,214,161 - Psest_1120 0.81 -0.7
1,214,161 - Psest_1120 0.81 +0.5
1,214,161 - Psest_1120 0.81 +0.1
1,214,161 - Psest_1120 0.81 -3.4
1,214,161 - Psest_1120 0.81 -3.0
1,214,161 - Psest_1120 0.81 -2.1
1,214,302 + -0.0
1,214,313 - -1.0
1,214,391 - +0.3
1,214,391 - -3.1
1,214,501 - +0.2
1,214,585 + -1.7
1,214,585 + +0.9
1,214,601 + Psest_1121 0.13 -2.6
1,214,601 + Psest_1121 0.13 -1.7
1,214,601 + Psest_1121 0.13 +4.2
1,214,601 + Psest_1121 0.13 +1.7
1,214,602 - Psest_1121 0.13 -1.0
1,214,602 - Psest_1121 0.13 +0.3
1,214,602 - Psest_1121 0.13 +0.5
1,214,602 - Psest_1121 0.13 +0.1

Or see this region's nucleotide sequence