Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0108

Experiment: Chlorate 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0106 and Psest_0107 are separated by 72 nucleotidesPsest_0107 and Psest_0108 overlap by 4 nucleotidesPsest_0108 and Psest_0109 are separated by 124 nucleotidesPsest_0109 and Psest_0110 are separated by 5 nucleotides Psest_0106: Psest_0106 - malonate decarboxylase, gamma subunit, at 105,053 to 105,838 _0106 Psest_0107: Psest_0107 - malonate decarboxylase holo-[acyl-carrier-protein] synthase, at 105,911 to 106,528 _0107 Psest_0108: Psest_0108 - malonate decarboxylase, epsilon subunit, at 106,525 to 107,451 _0108 Psest_0109: Psest_0109 - malonate transporter, MadL subunit, at 107,576 to 107,998 _0109 Psest_0110: Psest_0110 - malonate transporter, MadM subunit, at 108,004 to 108,768 _0110 Position (kb) 106 107 108Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 105.621 kb on - strand, within Psest_0106at 105.635 kb on + strand, within Psest_0106at 105.635 kb on + strand, within Psest_0106at 105.636 kb on - strand, within Psest_0106at 105.636 kb on - strand, within Psest_0106at 105.636 kb on - strand, within Psest_0106at 105.636 kb on - strand, within Psest_0106at 105.636 kb on - strand, within Psest_0106at 105.908 kb on + strandat 105.908 kb on + strandat 105.908 kb on + strandat 105.909 kb on - strandat 105.909 kb on - strandat 105.909 kb on - strandat 105.909 kb on - strandat 106.230 kb on - strand, within Psest_0107at 106.765 kb on + strand, within Psest_0108at 106.765 kb on + strand, within Psest_0108at 106.765 kb on + strand, within Psest_0108at 106.765 kb on + strand, within Psest_0108at 106.765 kb on + strand, within Psest_0108at 106.765 kb on + strand, within Psest_0108at 106.765 kb on + strand, within Psest_0108at 106.765 kb on + strand, within Psest_0108at 106.766 kb on - strand, within Psest_0108at 106.766 kb on - strand, within Psest_0108at 106.766 kb on - strand, within Psest_0108at 106.766 kb on - strand, within Psest_0108at 106.766 kb on - strand, within Psest_0108at 106.792 kb on + strand, within Psest_0108at 106.792 kb on + strand, within Psest_0108at 106.792 kb on + strand, within Psest_0108at 106.826 kb on - strand, within Psest_0108at 106.826 kb on - strand, within Psest_0108at 106.826 kb on - strand, within Psest_0108at 106.879 kb on + strand, within Psest_0108at 106.966 kb on + strand, within Psest_0108at 106.977 kb on + strand, within Psest_0108at 106.977 kb on + strand, within Psest_0108at 107.180 kb on - strand, within Psest_0108at 107.309 kb on + strand, within Psest_0108at 107.373 kb on + strandat 107.449 kb on + strandat 107.514 kb on + strandat 107.514 kb on + strandat 107.514 kb on + strandat 107.514 kb on + strandat 107.515 kb on - strandat 107.515 kb on - strandat 107.515 kb on - strandat 107.515 kb on - strandat 107.515 kb on - strandat 107.515 kb on - strandat 107.720 kb on + strand, within Psest_0109at 107.720 kb on + strand, within Psest_0109at 107.720 kb on + strand, within Psest_0109at 107.720 kb on + strand, within Psest_0109at 107.786 kb on + strand, within Psest_0109at 107.786 kb on + strand, within Psest_0109at 107.786 kb on + strand, within Psest_0109at 107.786 kb on + strand, within Psest_0109at 107.786 kb on + strand, within Psest_0109at 107.786 kb on + strand, within Psest_0109at 107.786 kb on + strand, within Psest_0109at 107.786 kb on + strand, within Psest_0109at 107.786 kb on + strand, within Psest_0109at 107.786 kb on + strand, within Psest_0109at 107.786 kb on + strand, within Psest_0109at 107.787 kb on - strand, within Psest_0109at 107.787 kb on - strand, within Psest_0109at 107.787 kb on - strand, within Psest_0109at 107.787 kb on - strand, within Psest_0109at 107.787 kb on - strand, within Psest_0109at 107.787 kb on - strand, within Psest_0109at 107.787 kb on - strand, within Psest_0109at 107.787 kb on - strand, within Psest_0109at 107.828 kb on + strand, within Psest_0109at 108.007 kb on + strandat 108.007 kb on + strandat 108.007 kb on + strandat 108.007 kb on + strandat 108.007 kb on + strandat 108.007 kb on + strandat 108.007 kb on + strandat 108.008 kb on - strandat 108.008 kb on - strandat 108.008 kb on - strandat 108.008 kb on - strandat 108.038 kb on - strandat 108.089 kb on - strand, within Psest_0110at 108.089 kb on - strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.166 kb on + strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.167 kb on - strand, within Psest_0110at 108.398 kb on - strand, within Psest_0110at 108.445 kb on + strand, within Psest_0110at 108.445 kb on + strand, within Psest_0110at 108.445 kb on + strand, within Psest_0110at 108.445 kb on + strand, within Psest_0110at 108.445 kb on + strand, within Psest_0110at 108.445 kb on + strand, within Psest_0110at 108.445 kb on + strand, within Psest_0110at 108.445 kb on + strand, within Psest_0110at 108.445 kb on + strand, within Psest_0110at 108.446 kb on - strand, within Psest_0110at 108.446 kb on - strand, within Psest_0110at 108.446 kb on - strand, within Psest_0110at 108.446 kb on - strand, within Psest_0110at 108.446 kb on - strand, within Psest_0110at 108.446 kb on - strand, within Psest_0110

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
remove
105,621 - Psest_0106 0.72 +1.1
105,635 + Psest_0106 0.74 -0.6
105,635 + Psest_0106 0.74 +0.7
105,636 - Psest_0106 0.74 +0.6
105,636 - Psest_0106 0.74 -0.7
105,636 - Psest_0106 0.74 +0.8
105,636 - Psest_0106 0.74 +2.3
105,636 - Psest_0106 0.74 +1.7
105,908 + +2.3
105,908 + +0.3
105,908 + +1.3
105,909 - +1.3
105,909 - +1.3
105,909 - +1.0
105,909 - +2.3
106,230 - Psest_0107 0.52 +2.3
106,765 + Psest_0108 0.26 -0.8
106,765 + Psest_0108 0.26 +1.2
106,765 + Psest_0108 0.26 +2.3
106,765 + Psest_0108 0.26 -0.4
106,765 + Psest_0108 0.26 +0.3
106,765 + Psest_0108 0.26 -0.7
106,765 + Psest_0108 0.26 +1.3
106,765 + Psest_0108 0.26 -0.9
106,766 - Psest_0108 0.26 -0.7
106,766 - Psest_0108 0.26 +1.0
106,766 - Psest_0108 0.26 -0.5
106,766 - Psest_0108 0.26 +1.8
106,766 - Psest_0108 0.26 -0.3
106,792 + Psest_0108 0.29 +2.3
106,792 + Psest_0108 0.29 -1.1
106,792 + Psest_0108 0.29 +1.3
106,826 - Psest_0108 0.32 +2.3
106,826 - Psest_0108 0.32 -1.1
106,826 - Psest_0108 0.32 -1.3
106,879 + Psest_0108 0.38 +0.9
106,966 + Psest_0108 0.48 +1.3
106,977 + Psest_0108 0.49 +2.3
106,977 + Psest_0108 0.49 +1.3
107,180 - Psest_0108 0.71 +2.3
107,309 + Psest_0108 0.85 -1.3
107,373 + -1.8
107,449 + -0.7
107,514 + -0.8
107,514 + +1.2
107,514 + +0.1
107,514 + +0.7
107,515 - -1.7
107,515 - +2.3
107,515 - +1.3
107,515 - -0.3
107,515 - +0.7
107,515 - +0.0
107,720 + Psest_0109 0.34 +0.3
107,720 + Psest_0109 0.34 +2.3
107,720 + Psest_0109 0.34 -0.8
107,720 + Psest_0109 0.34 -0.7
107,786 + Psest_0109 0.50 +3.7
107,786 + Psest_0109 0.50 -0.7
107,786 + Psest_0109 0.50 -0.5
107,786 + Psest_0109 0.50 -0.0
107,786 + Psest_0109 0.50 +0.0
107,786 + Psest_0109 0.50 +1.5
107,786 + Psest_0109 0.50 -0.3
107,786 + Psest_0109 0.50 -1.1
107,786 + Psest_0109 0.50 -0.6
107,786 + Psest_0109 0.50 -1.1
107,786 + Psest_0109 0.50 +1.3
107,787 - Psest_0109 0.50 +0.0
107,787 - Psest_0109 0.50 +0.7
107,787 - Psest_0109 0.50 -1.6
107,787 - Psest_0109 0.50 -1.2
107,787 - Psest_0109 0.50 +0.7
107,787 - Psest_0109 0.50 +0.1
107,787 - Psest_0109 0.50 +1.3
107,787 - Psest_0109 0.50 -1.0
107,828 + Psest_0109 0.60 +1.0
108,007 + +0.5
108,007 + -0.9
108,007 + +0.7
108,007 + +3.7
108,007 + +0.3
108,007 + -0.7
108,007 + +1.3
108,008 - -1.3
108,008 - +0.2
108,008 - +0.7
108,008 - -0.8
108,038 - +1.4
108,089 - Psest_0110 0.11 -1.8
108,089 - Psest_0110 0.11 -1.1
108,166 + Psest_0110 0.21 +0.5
108,166 + Psest_0110 0.21 -0.3
108,166 + Psest_0110 0.21 +0.3
108,166 + Psest_0110 0.21 +0.3
108,166 + Psest_0110 0.21 +1.3
108,166 + Psest_0110 0.21 +1.9
108,166 + Psest_0110 0.21 -1.1
108,166 + Psest_0110 0.21 -0.7
108,166 + Psest_0110 0.21 +0.3
108,166 + Psest_0110 0.21 +2.3
108,166 + Psest_0110 0.21 -0.5
108,166 + Psest_0110 0.21 +1.5
108,166 + Psest_0110 0.21 -0.8
108,166 + Psest_0110 0.21 +0.6
108,166 + Psest_0110 0.21 +0.7
108,166 + Psest_0110 0.21 -0.6
108,167 - Psest_0110 0.21 -0.1
108,167 - Psest_0110 0.21 +1.0
108,167 - Psest_0110 0.21 +0.7
108,167 - Psest_0110 0.21 +0.7
108,167 - Psest_0110 0.21 +2.8
108,167 - Psest_0110 0.21 +1.3
108,167 - Psest_0110 0.21 +1.6
108,167 - Psest_0110 0.21 +0.7
108,167 - Psest_0110 0.21 -2.4
108,167 - Psest_0110 0.21 +0.0
108,167 - Psest_0110 0.21 +0.7
108,167 - Psest_0110 0.21 +3.9
108,167 - Psest_0110 0.21 -0.3
108,167 - Psest_0110 0.21 +0.7
108,167 - Psest_0110 0.21 +0.3
108,167 - Psest_0110 0.21 -0.3
108,167 - Psest_0110 0.21 +0.0
108,167 - Psest_0110 0.21 +1.3
108,167 - Psest_0110 0.21 +0.7
108,398 - Psest_0110 0.52 +0.7
108,445 + Psest_0110 0.58 -2.1
108,445 + Psest_0110 0.58 +1.3
108,445 + Psest_0110 0.58 +1.0
108,445 + Psest_0110 0.58 +0.9
108,445 + Psest_0110 0.58 -0.3
108,445 + Psest_0110 0.58 -0.1
108,445 + Psest_0110 0.58 +0.2
108,445 + Psest_0110 0.58 -0.4
108,445 + Psest_0110 0.58 -0.9
108,446 - Psest_0110 0.58 +0.9
108,446 - Psest_0110 0.58 +1.3
108,446 - Psest_0110 0.58 +2.0
108,446 - Psest_0110 0.58 +0.7
108,446 - Psest_0110 0.58 +0.3
108,446 - Psest_0110 0.58 +0.1

Or see this region's nucleotide sequence