Experiment: Chlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1061 and Psest_1062 are separated by 80 nucleotides Psest_1062 and Psest_1063 overlap by 1 nucleotides Psest_1063 and Psest_1064 are separated by 176 nucleotides Psest_1064 and Psest_1065 are separated by 91 nucleotides Psest_1065 and Psest_1066 are separated by 226 nucleotides
Psest_1061: Psest_1061 - alpha,alpha-trehalose-phosphate synthase [UDP-forming], at 1,150,179 to 1,151,594
_1061
Psest_1062: Psest_1062 - Carbonic anhydrase, at 1,151,675 to 1,152,319
_1062
Psest_1063: Psest_1063 - Predicted permease, DMT superfamily, at 1,152,319 to 1,153,218
_1063
Psest_1064: Psest_1064 - tRNA_Met_CAT, at 1,153,395 to 1,153,471
_1064
Psest_1065: Psest_1065 - hypothetical protein, at 1,153,563 to 1,153,844
_1065
Psest_1066: Psest_1066 - hypothetical protein, at 1,154,071 to 1,154,280
_1066
Position (kb)
1152
1153
1154 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1151.641 kb on + strand at 1151.642 kb on - strand at 1151.672 kb on + strand at 1151.672 kb on + strand at 1151.672 kb on + strand at 1151.672 kb on + strand at 1151.672 kb on + strand at 1151.672 kb on + strand at 1151.672 kb on + strand at 1151.672 kb on + strand at 1151.672 kb on + strand at 1151.672 kb on + strand at 1151.672 kb on + strand at 1151.672 kb on + strand at 1151.673 kb on - strand at 1151.673 kb on - strand at 1151.673 kb on - strand at 1151.673 kb on - strand at 1151.673 kb on - strand at 1151.673 kb on - strand at 1151.673 kb on - strand at 1151.673 kb on - strand at 1151.783 kb on + strand, within Psest_1062 at 1152.053 kb on + strand, within Psest_1062 at 1152.053 kb on + strand, within Psest_1062 at 1152.054 kb on - strand, within Psest_1062 at 1152.054 kb on - strand, within Psest_1062 at 1152.054 kb on - strand, within Psest_1062 at 1152.054 kb on - strand, within Psest_1062 at 1152.054 kb on - strand, within Psest_1062 at 1152.057 kb on - strand, within Psest_1062 at 1152.218 kb on + strand, within Psest_1062 at 1152.219 kb on - strand, within Psest_1062 at 1152.219 kb on - strand, within Psest_1062 at 1152.219 kb on - strand, within Psest_1062 at 1152.219 kb on - strand, within Psest_1062 at 1152.406 kb on + strand at 1152.406 kb on + strand at 1152.406 kb on + strand at 1152.406 kb on + strand at 1152.406 kb on + strand at 1152.406 kb on + strand at 1152.406 kb on + strand at 1152.407 kb on - strand at 1152.407 kb on - strand at 1152.407 kb on - strand at 1152.407 kb on - strand at 1152.407 kb on - strand at 1152.407 kb on - strand at 1152.407 kb on - strand at 1152.407 kb on - strand at 1152.565 kb on + strand, within Psest_1063 at 1152.565 kb on + strand, within Psest_1063 at 1152.565 kb on + strand, within Psest_1063 at 1152.566 kb on - strand, within Psest_1063 at 1152.566 kb on - strand, within Psest_1063 at 1152.566 kb on - strand, within Psest_1063 at 1152.580 kb on + strand, within Psest_1063 at 1152.581 kb on - strand, within Psest_1063 at 1152.581 kb on - strand, within Psest_1063 at 1152.733 kb on + strand, within Psest_1063 at 1152.931 kb on + strand, within Psest_1063 at 1152.931 kb on + strand, within Psest_1063 at 1152.932 kb on - strand, within Psest_1063 at 1152.932 kb on - strand, within Psest_1063 at 1152.932 kb on - strand, within Psest_1063 at 1152.932 kb on - strand, within Psest_1063 at 1152.932 kb on - strand, within Psest_1063 at 1152.932 kb on - strand, within Psest_1063 at 1152.932 kb on - strand, within Psest_1063 at 1152.938 kb on - strand, within Psest_1063 at 1153.050 kb on - strand, within Psest_1063 at 1153.088 kb on - strand, within Psest_1063 at 1153.088 kb on - strand, within Psest_1063 at 1153.088 kb on - strand, within Psest_1063 at 1153.127 kb on + strand, within Psest_1063 at 1153.127 kb on + strand, within Psest_1063 at 1153.252 kb on + strand at 1153.279 kb on + strand at 1153.312 kb on + strand at 1153.563 kb on - strand at 1153.606 kb on + strand, within Psest_1065 at 1153.607 kb on - strand, within Psest_1065 at 1153.713 kb on + strand, within Psest_1065 at 1153.882 kb on + strand at 1153.883 kb on - strand at 1153.977 kb on + strand at 1153.977 kb on + strand at 1153.977 kb on + strand at 1153.978 kb on - strand at 1153.991 kb on + strand at 1153.992 kb on - strand at 1154.042 kb on - strand at 1154.042 kb on - strand at 1154.135 kb on - strand, within Psest_1066
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 75 mM remove 1,151,641 + -0.1 1,151,642 - +3.1 1,151,672 + +0.8 1,151,672 + +0.3 1,151,672 + -1.2 1,151,672 + -1.0 1,151,672 + -1.7 1,151,672 + -1.1 1,151,672 + -2.4 1,151,672 + +1.1 1,151,672 + +2.5 1,151,672 + +2.7 1,151,672 + +0.1 1,151,672 + -0.5 1,151,673 - -0.5 1,151,673 - +1.1 1,151,673 - +3.0 1,151,673 - -1.0 1,151,673 - +1.1 1,151,673 - +0.2 1,151,673 - +0.3 1,151,673 - -0.3 1,151,783 + Psest_1062 0.17 -2.1 1,152,053 + Psest_1062 0.59 +0.5 1,152,053 + Psest_1062 0.59 +0.4 1,152,054 - Psest_1062 0.59 +1.3 1,152,054 - Psest_1062 0.59 +0.8 1,152,054 - Psest_1062 0.59 +0.3 1,152,054 - Psest_1062 0.59 +0.3 1,152,054 - Psest_1062 0.59 -1.1 1,152,057 - Psest_1062 0.59 +1.7 1,152,218 + Psest_1062 0.84 -1.2 1,152,219 - Psest_1062 0.84 -0.5 1,152,219 - Psest_1062 0.84 -0.7 1,152,219 - Psest_1062 0.84 -0.1 1,152,219 - Psest_1062 0.84 +2.7 1,152,406 + -0.1 1,152,406 + +1.1 1,152,406 + -1.2 1,152,406 + +1.7 1,152,406 + -0.4 1,152,406 + +1.1 1,152,406 + -1.2 1,152,407 - -0.8 1,152,407 - -0.8 1,152,407 - +0.7 1,152,407 - +0.5 1,152,407 - -1.6 1,152,407 - -0.1 1,152,407 - +0.3 1,152,407 - +2.1 1,152,565 + Psest_1063 0.27 -0.4 1,152,565 + Psest_1063 0.27 -0.9 1,152,565 + Psest_1063 0.27 +1.7 1,152,566 - Psest_1063 0.27 +0.3 1,152,566 - Psest_1063 0.27 +0.3 1,152,566 - Psest_1063 0.27 +1.5 1,152,580 + Psest_1063 0.29 -1.1 1,152,581 - Psest_1063 0.29 +1.6 1,152,581 - Psest_1063 0.29 +2.2 1,152,733 + Psest_1063 0.46 -0.4 1,152,931 + Psest_1063 0.68 -0.1 1,152,931 + Psest_1063 0.68 +0.5 1,152,932 - Psest_1063 0.68 +1.8 1,152,932 - Psest_1063 0.68 -1.9 1,152,932 - Psest_1063 0.68 +2.7 1,152,932 - Psest_1063 0.68 -0.1 1,152,932 - Psest_1063 0.68 -0.3 1,152,932 - Psest_1063 0.68 -0.5 1,152,932 - Psest_1063 0.68 -0.6 1,152,938 - Psest_1063 0.69 +0.6 1,153,050 - Psest_1063 0.81 -0.9 1,153,088 - Psest_1063 0.85 -0.1 1,153,088 - Psest_1063 0.85 -0.8 1,153,088 - Psest_1063 0.85 +0.7 1,153,127 + Psest_1063 0.90 -0.8 1,153,127 + Psest_1063 0.90 +2.5 1,153,252 + -0.7 1,153,279 + +0.2 1,153,312 + +1.3 1,153,563 - -0.1 1,153,606 + Psest_1065 0.15 -1.9 1,153,607 - Psest_1065 0.16 -0.5 1,153,713 + Psest_1065 0.53 -2.1 1,153,882 + +2.3 1,153,883 - -1.9 1,153,977 + +0.7 1,153,977 + +1.7 1,153,977 + +1.1 1,153,978 - +1.1 1,153,991 + +0.3 1,153,992 - +0.4 1,154,042 - -0.8 1,154,042 - +1.1 1,154,135 - Psest_1066 0.30 +0.1
Or see this region's nucleotide sequence