Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1063

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1061 and Psest_1062 are separated by 80 nucleotidesPsest_1062 and Psest_1063 overlap by 1 nucleotidesPsest_1063 and Psest_1064 are separated by 176 nucleotidesPsest_1064 and Psest_1065 are separated by 91 nucleotidesPsest_1065 and Psest_1066 are separated by 226 nucleotides Psest_1061: Psest_1061 - alpha,alpha-trehalose-phosphate synthase [UDP-forming], at 1,150,179 to 1,151,594 _1061 Psest_1062: Psest_1062 - Carbonic anhydrase, at 1,151,675 to 1,152,319 _1062 Psest_1063: Psest_1063 - Predicted permease, DMT superfamily, at 1,152,319 to 1,153,218 _1063 Psest_1064: Psest_1064 - tRNA_Met_CAT, at 1,153,395 to 1,153,471 _1064 Psest_1065: Psest_1065 - hypothetical protein, at 1,153,563 to 1,153,844 _1065 Psest_1066: Psest_1066 - hypothetical protein, at 1,154,071 to 1,154,280 _1066 Position (kb) 1152 1153 1154Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1151.641 kb on + strandat 1151.642 kb on - strandat 1151.672 kb on + strandat 1151.672 kb on + strandat 1151.672 kb on + strandat 1151.672 kb on + strandat 1151.672 kb on + strandat 1151.672 kb on + strandat 1151.672 kb on + strandat 1151.672 kb on + strandat 1151.672 kb on + strandat 1151.672 kb on + strandat 1151.672 kb on + strandat 1151.672 kb on + strandat 1151.673 kb on - strandat 1151.673 kb on - strandat 1151.673 kb on - strandat 1151.673 kb on - strandat 1151.673 kb on - strandat 1151.673 kb on - strandat 1151.673 kb on - strandat 1151.673 kb on - strandat 1151.783 kb on + strand, within Psest_1062at 1152.053 kb on + strand, within Psest_1062at 1152.053 kb on + strand, within Psest_1062at 1152.054 kb on - strand, within Psest_1062at 1152.054 kb on - strand, within Psest_1062at 1152.054 kb on - strand, within Psest_1062at 1152.054 kb on - strand, within Psest_1062at 1152.054 kb on - strand, within Psest_1062at 1152.057 kb on - strand, within Psest_1062at 1152.218 kb on + strand, within Psest_1062at 1152.219 kb on - strand, within Psest_1062at 1152.219 kb on - strand, within Psest_1062at 1152.219 kb on - strand, within Psest_1062at 1152.219 kb on - strand, within Psest_1062at 1152.406 kb on + strandat 1152.406 kb on + strandat 1152.406 kb on + strandat 1152.406 kb on + strandat 1152.406 kb on + strandat 1152.406 kb on + strandat 1152.406 kb on + strandat 1152.407 kb on - strandat 1152.407 kb on - strandat 1152.407 kb on - strandat 1152.407 kb on - strandat 1152.407 kb on - strandat 1152.407 kb on - strandat 1152.407 kb on - strandat 1152.407 kb on - strandat 1152.565 kb on + strand, within Psest_1063at 1152.565 kb on + strand, within Psest_1063at 1152.565 kb on + strand, within Psest_1063at 1152.566 kb on - strand, within Psest_1063at 1152.566 kb on - strand, within Psest_1063at 1152.566 kb on - strand, within Psest_1063at 1152.580 kb on + strand, within Psest_1063at 1152.581 kb on - strand, within Psest_1063at 1152.581 kb on - strand, within Psest_1063at 1152.733 kb on + strand, within Psest_1063at 1152.931 kb on + strand, within Psest_1063at 1152.931 kb on + strand, within Psest_1063at 1152.932 kb on - strand, within Psest_1063at 1152.932 kb on - strand, within Psest_1063at 1152.932 kb on - strand, within Psest_1063at 1152.932 kb on - strand, within Psest_1063at 1152.932 kb on - strand, within Psest_1063at 1152.932 kb on - strand, within Psest_1063at 1152.932 kb on - strand, within Psest_1063at 1152.938 kb on - strand, within Psest_1063at 1153.050 kb on - strand, within Psest_1063at 1153.088 kb on - strand, within Psest_1063at 1153.088 kb on - strand, within Psest_1063at 1153.088 kb on - strand, within Psest_1063at 1153.127 kb on + strand, within Psest_1063at 1153.127 kb on + strand, within Psest_1063at 1153.252 kb on + strandat 1153.279 kb on + strandat 1153.312 kb on + strandat 1153.563 kb on - strandat 1153.606 kb on + strand, within Psest_1065at 1153.607 kb on - strand, within Psest_1065at 1153.713 kb on + strand, within Psest_1065at 1153.882 kb on + strandat 1153.883 kb on - strandat 1153.977 kb on + strandat 1153.977 kb on + strandat 1153.977 kb on + strandat 1153.978 kb on - strandat 1153.991 kb on + strandat 1153.992 kb on - strandat 1154.042 kb on - strandat 1154.042 kb on - strandat 1154.135 kb on - strand, within Psest_1066

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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1,151,641 + -0.1
1,151,642 - +3.1
1,151,672 + +0.8
1,151,672 + +0.3
1,151,672 + -1.2
1,151,672 + -1.0
1,151,672 + -1.7
1,151,672 + -1.1
1,151,672 + -2.4
1,151,672 + +1.1
1,151,672 + +2.5
1,151,672 + +2.7
1,151,672 + +0.1
1,151,672 + -0.5
1,151,673 - -0.5
1,151,673 - +1.1
1,151,673 - +3.0
1,151,673 - -1.0
1,151,673 - +1.1
1,151,673 - +0.2
1,151,673 - +0.3
1,151,673 - -0.3
1,151,783 + Psest_1062 0.17 -2.1
1,152,053 + Psest_1062 0.59 +0.5
1,152,053 + Psest_1062 0.59 +0.4
1,152,054 - Psest_1062 0.59 +1.3
1,152,054 - Psest_1062 0.59 +0.8
1,152,054 - Psest_1062 0.59 +0.3
1,152,054 - Psest_1062 0.59 +0.3
1,152,054 - Psest_1062 0.59 -1.1
1,152,057 - Psest_1062 0.59 +1.7
1,152,218 + Psest_1062 0.84 -1.2
1,152,219 - Psest_1062 0.84 -0.5
1,152,219 - Psest_1062 0.84 -0.7
1,152,219 - Psest_1062 0.84 -0.1
1,152,219 - Psest_1062 0.84 +2.7
1,152,406 + -0.1
1,152,406 + +1.1
1,152,406 + -1.2
1,152,406 + +1.7
1,152,406 + -0.4
1,152,406 + +1.1
1,152,406 + -1.2
1,152,407 - -0.8
1,152,407 - -0.8
1,152,407 - +0.7
1,152,407 - +0.5
1,152,407 - -1.6
1,152,407 - -0.1
1,152,407 - +0.3
1,152,407 - +2.1
1,152,565 + Psest_1063 0.27 -0.4
1,152,565 + Psest_1063 0.27 -0.9
1,152,565 + Psest_1063 0.27 +1.7
1,152,566 - Psest_1063 0.27 +0.3
1,152,566 - Psest_1063 0.27 +0.3
1,152,566 - Psest_1063 0.27 +1.5
1,152,580 + Psest_1063 0.29 -1.1
1,152,581 - Psest_1063 0.29 +1.6
1,152,581 - Psest_1063 0.29 +2.2
1,152,733 + Psest_1063 0.46 -0.4
1,152,931 + Psest_1063 0.68 -0.1
1,152,931 + Psest_1063 0.68 +0.5
1,152,932 - Psest_1063 0.68 +1.8
1,152,932 - Psest_1063 0.68 -1.9
1,152,932 - Psest_1063 0.68 +2.7
1,152,932 - Psest_1063 0.68 -0.1
1,152,932 - Psest_1063 0.68 -0.3
1,152,932 - Psest_1063 0.68 -0.5
1,152,932 - Psest_1063 0.68 -0.6
1,152,938 - Psest_1063 0.69 +0.6
1,153,050 - Psest_1063 0.81 -0.9
1,153,088 - Psest_1063 0.85 -0.1
1,153,088 - Psest_1063 0.85 -0.8
1,153,088 - Psest_1063 0.85 +0.7
1,153,127 + Psest_1063 0.90 -0.8
1,153,127 + Psest_1063 0.90 +2.5
1,153,252 + -0.7
1,153,279 + +0.2
1,153,312 + +1.3
1,153,563 - -0.1
1,153,606 + Psest_1065 0.15 -1.9
1,153,607 - Psest_1065 0.16 -0.5
1,153,713 + Psest_1065 0.53 -2.1
1,153,882 + +2.3
1,153,883 - -1.9
1,153,977 + +0.7
1,153,977 + +1.7
1,153,977 + +1.1
1,153,978 - +1.1
1,153,991 + +0.3
1,153,992 - +0.4
1,154,042 - -0.8
1,154,042 - +1.1
1,154,135 - Psest_1066 0.30 +0.1

Or see this region's nucleotide sequence