Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1060

Experiment: Chlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1059 and Psest_1060 are separated by 180 nucleotidesPsest_1060 and Psest_1061 are separated by 16 nucleotides Psest_1059: Psest_1059 - hypothetical protein, at 1,148,663 to 1,149,205 _1059 Psest_1060: Psest_1060 - trehalose-phosphatase, at 1,149,386 to 1,150,162 _1060 Psest_1061: Psest_1061 - alpha,alpha-trehalose-phosphate synthase [UDP-forming], at 1,150,179 to 1,151,594 _1061 Position (kb) 1149 1150 1151Strain fitness (log2 ratio) -2 -1 0 1 2at 1148.409 kb on - strandat 1148.561 kb on + strandat 1148.561 kb on + strandat 1148.562 kb on - strandat 1148.562 kb on - strandat 1148.562 kb on - strandat 1148.580 kb on + strandat 1148.580 kb on + strandat 1148.580 kb on + strandat 1148.580 kb on + strandat 1148.581 kb on - strandat 1148.581 kb on - strandat 1148.581 kb on - strandat 1148.581 kb on - strandat 1148.587 kb on - strandat 1148.610 kb on + strandat 1148.610 kb on + strandat 1148.611 kb on - strandat 1148.611 kb on - strandat 1148.611 kb on - strandat 1148.612 kb on + strandat 1148.612 kb on + strandat 1148.612 kb on + strandat 1148.612 kb on + strandat 1148.613 kb on - strandat 1148.613 kb on - strandat 1148.613 kb on - strandat 1148.613 kb on - strandat 1148.613 kb on - strandat 1148.664 kb on + strandat 1148.664 kb on + strandat 1148.665 kb on - strandat 1149.378 kb on + strandat 1149.379 kb on - strandat 1149.379 kb on - strandat 1150.161 kb on - strandat 1150.172 kb on + strandat 1150.172 kb on + strandat 1150.173 kb on - strandat 1150.189 kb on + strandat 1150.190 kb on - strandat 1150.190 kb on - strandat 1150.190 kb on - strandat 1150.192 kb on + strandat 1150.193 kb on - strandat 1150.263 kb on + strandat 1150.264 kb on - strandat 1150.362 kb on + strand, within Psest_1061at 1150.362 kb on + strand, within Psest_1061at 1150.362 kb on + strand, within Psest_1061at 1150.362 kb on + strand, within Psest_1061at 1150.362 kb on + strand, within Psest_1061at 1150.362 kb on + strand, within Psest_1061at 1150.363 kb on - strand, within Psest_1061at 1150.363 kb on - strand, within Psest_1061at 1150.363 kb on - strand, within Psest_1061at 1150.363 kb on - strand, within Psest_1061at 1150.363 kb on - strand, within Psest_1061at 1150.363 kb on - strand, within Psest_1061at 1150.363 kb on - strand, within Psest_1061at 1150.363 kb on - strand, within Psest_1061at 1150.363 kb on - strand, within Psest_1061at 1150.392 kb on + strand, within Psest_1061at 1150.393 kb on - strand, within Psest_1061at 1150.401 kb on + strand, within Psest_1061at 1150.405 kb on - strand, within Psest_1061at 1150.710 kb on + strand, within Psest_1061at 1150.711 kb on - strand, within Psest_1061at 1150.711 kb on - strand, within Psest_1061at 1150.714 kb on - strand, within Psest_1061at 1150.764 kb on + strand, within Psest_1061at 1150.764 kb on + strand, within Psest_1061at 1150.764 kb on + strand, within Psest_1061at 1150.764 kb on + strand, within Psest_1061at 1150.765 kb on - strand, within Psest_1061at 1150.765 kb on - strand, within Psest_1061at 1150.765 kb on - strand, within Psest_1061at 1150.765 kb on - strand, within Psest_1061at 1150.765 kb on - strand, within Psest_1061at 1150.765 kb on - strand, within Psest_1061at 1150.765 kb on - strand, within Psest_1061at 1150.765 kb on - strand, within Psest_1061at 1150.893 kb on + strand, within Psest_1061at 1150.894 kb on - strand, within Psest_1061at 1151.094 kb on + strand, within Psest_1061at 1151.094 kb on + strand, within Psest_1061at 1151.094 kb on + strand, within Psest_1061at 1151.094 kb on + strand, within Psest_1061at 1151.094 kb on + strand, within Psest_1061

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorate 75 mM
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1,148,409 - +1.1
1,148,561 + -0.5
1,148,561 + -1.9
1,148,562 - -1.1
1,148,562 - +1.1
1,148,562 - +1.9
1,148,580 + -1.2
1,148,580 + +0.3
1,148,580 + +2.7
1,148,580 + +0.1
1,148,581 - -0.3
1,148,581 - +0.3
1,148,581 - -0.5
1,148,581 - +0.3
1,148,587 - +2.1
1,148,610 + -0.3
1,148,610 + -0.2
1,148,611 - -0.1
1,148,611 - -0.3
1,148,611 - +0.3
1,148,612 + -0.2
1,148,612 + +0.7
1,148,612 + +0.3
1,148,612 + -2.0
1,148,613 - -0.3
1,148,613 - +1.1
1,148,613 - -0.3
1,148,613 - +0.7
1,148,613 - +1.7
1,148,664 + +1.7
1,148,664 + -1.7
1,148,665 - +0.1
1,149,378 + +0.7
1,149,379 - -0.9
1,149,379 - -0.4
1,150,161 - +0.6
1,150,172 + +1.4
1,150,172 + +0.7
1,150,173 - +0.7
1,150,189 + -2.7
1,150,190 - -1.9
1,150,190 - -1.0
1,150,190 - +0.9
1,150,192 + -0.8
1,150,193 - -1.2
1,150,263 + -0.3
1,150,264 - +1.1
1,150,362 + Psest_1061 0.13 -1.4
1,150,362 + Psest_1061 0.13 +0.1
1,150,362 + Psest_1061 0.13 -0.1
1,150,362 + Psest_1061 0.13 +1.1
1,150,362 + Psest_1061 0.13 +1.8
1,150,362 + Psest_1061 0.13 -0.7
1,150,363 - Psest_1061 0.13 -0.4
1,150,363 - Psest_1061 0.13 +0.0
1,150,363 - Psest_1061 0.13 +0.4
1,150,363 - Psest_1061 0.13 -0.3
1,150,363 - Psest_1061 0.13 +1.9
1,150,363 - Psest_1061 0.13 -1.1
1,150,363 - Psest_1061 0.13 -0.7
1,150,363 - Psest_1061 0.13 +2.7
1,150,363 - Psest_1061 0.13 +0.1
1,150,392 + Psest_1061 0.15 -1.5
1,150,393 - Psest_1061 0.15 +0.2
1,150,401 + Psest_1061 0.16 -1.0
1,150,405 - Psest_1061 0.16 +2.7
1,150,710 + Psest_1061 0.38 +2.1
1,150,711 - Psest_1061 0.38 -0.1
1,150,711 - Psest_1061 0.38 -0.3
1,150,714 - Psest_1061 0.38 -0.3
1,150,764 + Psest_1061 0.41 +0.3
1,150,764 + Psest_1061 0.41 -1.9
1,150,764 + Psest_1061 0.41 +1.1
1,150,764 + Psest_1061 0.41 +0.3
1,150,765 - Psest_1061 0.41 -0.2
1,150,765 - Psest_1061 0.41 +0.1
1,150,765 - Psest_1061 0.41 +0.1
1,150,765 - Psest_1061 0.41 +0.3
1,150,765 - Psest_1061 0.41 -0.1
1,150,765 - Psest_1061 0.41 +0.4
1,150,765 - Psest_1061 0.41 -1.7
1,150,765 - Psest_1061 0.41 +1.1
1,150,893 + Psest_1061 0.50 -0.3
1,150,894 - Psest_1061 0.50 +0.3
1,151,094 + Psest_1061 0.65 +0.1
1,151,094 + Psest_1061 0.65 +2.0
1,151,094 + Psest_1061 0.65 +0.1
1,151,094 + Psest_1061 0.65 +0.9
1,151,094 + Psest_1061 0.65 +0.7

Or see this region's nucleotide sequence