Strain Fitness in Dechlorosoma suillum PS around Dsui_2063

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2062 and Dsui_2063 are separated by 91 nucleotidesDsui_2063 and Dsui_2064 are separated by 135 nucleotidesDsui_2064 and Dsui_2065 are separated by 46 nucleotides Dsui_2062: Dsui_2062 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 2,181,624 to 2,182,031 _2062 Dsui_2063: Dsui_2063 - protein chain release factor B, at 2,182,123 to 2,182,521 _2063 Dsui_2064: Dsui_2064 - ABC-type metal ion transport system, periplasmic component/surface antigen, at 2,182,657 to 2,183,466 _2064 Dsui_2065: Dsui_2065 - hypothetical protein, contains double-stranded beta-helix domain, at 2,183,513 to 2,184,088 _2065 Position (kb) 2182 2183Strain fitness (log2 ratio) -3 -2 -1 0 1at 2181.239 kb on + strandat 2181.247 kb on - strandat 2181.271 kb on + strandat 2181.281 kb on + strandat 2181.303 kb on + strandat 2181.479 kb on + strandat 2181.479 kb on + strandat 2181.487 kb on - strandat 2181.501 kb on - strandat 2181.569 kb on - strandat 2181.709 kb on + strand, within Dsui_2062at 2181.709 kb on + strand, within Dsui_2062at 2181.782 kb on - strand, within Dsui_2062at 2181.785 kb on + strand, within Dsui_2062at 2181.826 kb on + strand, within Dsui_2062at 2181.850 kb on + strand, within Dsui_2062at 2181.875 kb on + strand, within Dsui_2062at 2181.921 kb on + strand, within Dsui_2062at 2181.921 kb on + strand, within Dsui_2062at 2181.983 kb on - strand, within Dsui_2062at 2182.011 kb on - strandat 2182.013 kb on + strandat 2182.021 kb on - strandat 2182.021 kb on - strandat 2182.163 kb on + strand, within Dsui_2063at 2182.293 kb on + strand, within Dsui_2063at 2182.376 kb on + strand, within Dsui_2063at 2182.384 kb on - strand, within Dsui_2063at 2182.428 kb on - strand, within Dsui_2063at 2182.503 kb on + strandat 2182.511 kb on - strandat 2182.516 kb on + strandat 2182.516 kb on + strandat 2182.523 kb on + strandat 2182.567 kb on - strandat 2182.636 kb on - strandat 2182.759 kb on - strand, within Dsui_2064at 2182.792 kb on - strand, within Dsui_2064at 2182.847 kb on - strand, within Dsui_2064at 2182.847 kb on - strand, within Dsui_2064at 2182.901 kb on - strand, within Dsui_2064at 2182.909 kb on - strand, within Dsui_2064at 2182.976 kb on + strand, within Dsui_2064at 2183.011 kb on - strand, within Dsui_2064at 2183.060 kb on + strandat 2183.070 kb on + strand, within Dsui_2064at 2183.166 kb on + strandat 2183.167 kb on + strandat 2183.175 kb on + strandat 2183.255 kb on - strand, within Dsui_2064at 2183.255 kb on - strand, within Dsui_2064at 2183.339 kb on - strand, within Dsui_2064at 2183.411 kb on + strandat 2183.421 kb on + strandat 2183.488 kb on + strandat 2183.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor
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2,181,239 + +0.3
2,181,247 - +0.1
2,181,271 + -0.9
2,181,281 + +0.0
2,181,303 + -0.1
2,181,479 + +0.8
2,181,479 + -1.0
2,181,487 - -2.2
2,181,501 - -0.7
2,181,569 - +1.1
2,181,709 + Dsui_2062 0.21 -0.3
2,181,709 + Dsui_2062 0.21 -0.4
2,181,782 - Dsui_2062 0.39 -0.0
2,181,785 + Dsui_2062 0.39 +0.4
2,181,826 + Dsui_2062 0.50 +0.3
2,181,850 + Dsui_2062 0.55 -0.6
2,181,875 + Dsui_2062 0.62 +0.6
2,181,921 + Dsui_2062 0.73 +0.8
2,181,921 + Dsui_2062 0.73 +0.2
2,181,983 - Dsui_2062 0.88 +0.0
2,182,011 - -0.5
2,182,013 + +0.1
2,182,021 - -0.2
2,182,021 - -1.3
2,182,163 + Dsui_2063 0.10 -1.3
2,182,293 + Dsui_2063 0.43 -0.4
2,182,376 + Dsui_2063 0.63 +0.5
2,182,384 - Dsui_2063 0.65 -0.7
2,182,428 - Dsui_2063 0.76 -0.2
2,182,503 + -0.0
2,182,511 - -1.9
2,182,516 + -1.4
2,182,516 + -0.1
2,182,523 + -0.3
2,182,567 - -1.0
2,182,636 - -0.4
2,182,759 - Dsui_2064 0.13 -0.4
2,182,792 - Dsui_2064 0.17 +0.3
2,182,847 - Dsui_2064 0.23 +0.8
2,182,847 - Dsui_2064 0.23 -0.6
2,182,901 - Dsui_2064 0.30 +0.0
2,182,909 - Dsui_2064 0.31 -0.1
2,182,976 + Dsui_2064 0.39 -2.6
2,183,011 - Dsui_2064 0.44 +0.4
2,183,060 + -0.2
2,183,070 + Dsui_2064 0.51 -0.3
2,183,166 + -0.6
2,183,167 + +0.1
2,183,175 + -0.2
2,183,255 - Dsui_2064 0.74 -0.5
2,183,255 - Dsui_2064 0.74 +0.1
2,183,339 - Dsui_2064 0.84 -0.8
2,183,411 + +0.1
2,183,421 + -0.4
2,183,488 + -0.1
2,183,506 - -3.1

Or see this region's nucleotide sequence