Experiment: Anaerobic growth in rich media with perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1152 and Dsui_1153 overlap by 4 nucleotides Dsui_1153 and Dsui_1154 are separated by 139 nucleotides
Dsui_1152: Dsui_1152 - Ni,Fe-hydrogenase I large subunit, at 1,206,546 to 1,208,006
_1152
Dsui_1153: Dsui_1153 - Ni,Fe-hydrogenase I small subunit, at 1,208,003 to 1,208,998
_1153
Dsui_1154: Dsui_1154 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,209,138 to 1,210,613
_1154
Position (kb)
1208
1209 Strain fitness (log2 ratio)
-1
0
1 at 1207.031 kb on - strand, within Dsui_1152 at 1207.064 kb on - strand, within Dsui_1152 at 1207.089 kb on + strand, within Dsui_1152 at 1207.107 kb on + strand at 1207.156 kb on - strand, within Dsui_1152 at 1207.352 kb on + strand, within Dsui_1152 at 1207.447 kb on + strand, within Dsui_1152 at 1207.455 kb on - strand, within Dsui_1152 at 1207.455 kb on - strand, within Dsui_1152 at 1207.497 kb on - strand, within Dsui_1152 at 1207.575 kb on + strand at 1207.724 kb on + strand, within Dsui_1152 at 1207.728 kb on - strand at 1207.781 kb on - strand, within Dsui_1152 at 1207.904 kb on - strand at 1207.906 kb on + strand at 1207.943 kb on + strand at 1207.943 kb on + strand at 1207.943 kb on + strand at 1207.951 kb on - strand at 1207.957 kb on - strand at 1207.966 kb on + strand at 1207.985 kb on - strand at 1208.014 kb on - strand at 1208.046 kb on - strand at 1208.122 kb on - strand, within Dsui_1153 at 1208.133 kb on + strand, within Dsui_1153 at 1208.165 kb on - strand, within Dsui_1153 at 1208.216 kb on + strand, within Dsui_1153 at 1208.269 kb on - strand, within Dsui_1153 at 1208.335 kb on + strand, within Dsui_1153 at 1208.415 kb on - strand, within Dsui_1153 at 1208.562 kb on + strand, within Dsui_1153 at 1208.719 kb on - strand, within Dsui_1153 at 1209.019 kb on + strand at 1209.038 kb on - strand at 1209.066 kb on + strand at 1209.187 kb on - strand at 1209.195 kb on + strand at 1209.211 kb on + strand at 1209.219 kb on - strand at 1209.284 kb on + strand at 1209.303 kb on - strand, within Dsui_1154 at 1209.357 kb on - strand, within Dsui_1154 at 1209.394 kb on + strand, within Dsui_1154 at 1209.427 kb on - strand, within Dsui_1154 at 1209.505 kb on + strand, within Dsui_1154 at 1209.505 kb on + strand, within Dsui_1154 at 1209.596 kb on + strand, within Dsui_1154 at 1209.596 kb on + strand, within Dsui_1154 at 1209.604 kb on - strand, within Dsui_1154 at 1209.717 kb on + strand at 1209.724 kb on + strand, within Dsui_1154 at 1209.814 kb on + strand, within Dsui_1154
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor remove 1,207,031 - Dsui_1152 0.33 -0.1 1,207,064 - Dsui_1152 0.35 -0.4 1,207,089 + Dsui_1152 0.37 -0.3 1,207,107 + -0.6 1,207,156 - Dsui_1152 0.42 -0.3 1,207,352 + Dsui_1152 0.55 -0.1 1,207,447 + Dsui_1152 0.62 -0.1 1,207,455 - Dsui_1152 0.62 +0.0 1,207,455 - Dsui_1152 0.62 +0.3 1,207,497 - Dsui_1152 0.65 -0.5 1,207,575 + -1.4 1,207,724 + Dsui_1152 0.81 -0.1 1,207,728 - -0.1 1,207,781 - Dsui_1152 0.85 -0.2 1,207,904 - -0.8 1,207,906 + -0.4 1,207,943 + +1.0 1,207,943 + -0.5 1,207,943 + -0.9 1,207,951 - -0.3 1,207,957 - -0.2 1,207,966 + -0.0 1,207,985 - +0.4 1,208,014 - +0.0 1,208,046 - -0.5 1,208,122 - Dsui_1153 0.12 -0.5 1,208,133 + Dsui_1153 0.13 -1.1 1,208,165 - Dsui_1153 0.16 -0.0 1,208,216 + Dsui_1153 0.21 -0.6 1,208,269 - Dsui_1153 0.27 -0.7 1,208,335 + Dsui_1153 0.33 +0.1 1,208,415 - Dsui_1153 0.41 +1.3 1,208,562 + Dsui_1153 0.56 -0.5 1,208,719 - Dsui_1153 0.72 -0.3 1,209,019 + -1.4 1,209,038 - -0.9 1,209,066 + -0.2 1,209,187 - -0.2 1,209,195 + +0.2 1,209,211 + -0.7 1,209,219 - +0.1 1,209,284 + +0.5 1,209,303 - Dsui_1154 0.11 -0.4 1,209,357 - Dsui_1154 0.15 -1.0 1,209,394 + Dsui_1154 0.17 -0.3 1,209,427 - Dsui_1154 0.20 -0.6 1,209,505 + Dsui_1154 0.25 +1.0 1,209,505 + Dsui_1154 0.25 -0.3 1,209,596 + Dsui_1154 0.31 -0.1 1,209,596 + Dsui_1154 0.31 -0.3 1,209,604 - Dsui_1154 0.32 -0.3 1,209,717 + +1.0 1,209,724 + Dsui_1154 0.40 +0.4 1,209,814 + Dsui_1154 0.46 -0.8
Or see this region's nucleotide sequence