Strain Fitness in Dechlorosoma suillum PS around Dsui_1153

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1152 and Dsui_1153 overlap by 4 nucleotidesDsui_1153 and Dsui_1154 are separated by 139 nucleotides Dsui_1152: Dsui_1152 - Ni,Fe-hydrogenase I large subunit, at 1,206,546 to 1,208,006 _1152 Dsui_1153: Dsui_1153 - Ni,Fe-hydrogenase I small subunit, at 1,208,003 to 1,208,998 _1153 Dsui_1154: Dsui_1154 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,209,138 to 1,210,613 _1154 Position (kb) 1208 1209Strain fitness (log2 ratio) -1 0 1at 1207.031 kb on - strand, within Dsui_1152at 1207.064 kb on - strand, within Dsui_1152at 1207.089 kb on + strand, within Dsui_1152at 1207.107 kb on + strandat 1207.156 kb on - strand, within Dsui_1152at 1207.352 kb on + strand, within Dsui_1152at 1207.447 kb on + strand, within Dsui_1152at 1207.455 kb on - strand, within Dsui_1152at 1207.455 kb on - strand, within Dsui_1152at 1207.497 kb on - strand, within Dsui_1152at 1207.575 kb on + strandat 1207.724 kb on + strand, within Dsui_1152at 1207.728 kb on - strandat 1207.781 kb on - strand, within Dsui_1152at 1207.904 kb on - strandat 1207.906 kb on + strandat 1207.943 kb on + strandat 1207.943 kb on + strandat 1207.943 kb on + strandat 1207.951 kb on - strandat 1207.957 kb on - strandat 1207.966 kb on + strandat 1207.985 kb on - strandat 1208.014 kb on - strandat 1208.046 kb on - strandat 1208.122 kb on - strand, within Dsui_1153at 1208.133 kb on + strand, within Dsui_1153at 1208.165 kb on - strand, within Dsui_1153at 1208.216 kb on + strand, within Dsui_1153at 1208.269 kb on - strand, within Dsui_1153at 1208.335 kb on + strand, within Dsui_1153at 1208.415 kb on - strand, within Dsui_1153at 1208.562 kb on + strand, within Dsui_1153at 1208.719 kb on - strand, within Dsui_1153at 1209.019 kb on + strandat 1209.038 kb on - strandat 1209.066 kb on + strandat 1209.187 kb on - strandat 1209.195 kb on + strandat 1209.211 kb on + strandat 1209.219 kb on - strandat 1209.284 kb on + strandat 1209.303 kb on - strand, within Dsui_1154at 1209.357 kb on - strand, within Dsui_1154at 1209.394 kb on + strand, within Dsui_1154at 1209.427 kb on - strand, within Dsui_1154at 1209.505 kb on + strand, within Dsui_1154at 1209.505 kb on + strand, within Dsui_1154at 1209.596 kb on + strand, within Dsui_1154at 1209.596 kb on + strand, within Dsui_1154at 1209.604 kb on - strand, within Dsui_1154at 1209.717 kb on + strandat 1209.724 kb on + strand, within Dsui_1154at 1209.814 kb on + strand, within Dsui_1154

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor
remove
1,207,031 - Dsui_1152 0.33 -0.1
1,207,064 - Dsui_1152 0.35 -0.4
1,207,089 + Dsui_1152 0.37 -0.3
1,207,107 + -0.6
1,207,156 - Dsui_1152 0.42 -0.3
1,207,352 + Dsui_1152 0.55 -0.1
1,207,447 + Dsui_1152 0.62 -0.1
1,207,455 - Dsui_1152 0.62 +0.0
1,207,455 - Dsui_1152 0.62 +0.3
1,207,497 - Dsui_1152 0.65 -0.5
1,207,575 + -1.4
1,207,724 + Dsui_1152 0.81 -0.1
1,207,728 - -0.1
1,207,781 - Dsui_1152 0.85 -0.2
1,207,904 - -0.8
1,207,906 + -0.4
1,207,943 + +1.0
1,207,943 + -0.5
1,207,943 + -0.9
1,207,951 - -0.3
1,207,957 - -0.2
1,207,966 + -0.0
1,207,985 - +0.4
1,208,014 - +0.0
1,208,046 - -0.5
1,208,122 - Dsui_1153 0.12 -0.5
1,208,133 + Dsui_1153 0.13 -1.1
1,208,165 - Dsui_1153 0.16 -0.0
1,208,216 + Dsui_1153 0.21 -0.6
1,208,269 - Dsui_1153 0.27 -0.7
1,208,335 + Dsui_1153 0.33 +0.1
1,208,415 - Dsui_1153 0.41 +1.3
1,208,562 + Dsui_1153 0.56 -0.5
1,208,719 - Dsui_1153 0.72 -0.3
1,209,019 + -1.4
1,209,038 - -0.9
1,209,066 + -0.2
1,209,187 - -0.2
1,209,195 + +0.2
1,209,211 + -0.7
1,209,219 - +0.1
1,209,284 + +0.5
1,209,303 - Dsui_1154 0.11 -0.4
1,209,357 - Dsui_1154 0.15 -1.0
1,209,394 + Dsui_1154 0.17 -0.3
1,209,427 - Dsui_1154 0.20 -0.6
1,209,505 + Dsui_1154 0.25 +1.0
1,209,505 + Dsui_1154 0.25 -0.3
1,209,596 + Dsui_1154 0.31 -0.1
1,209,596 + Dsui_1154 0.31 -0.3
1,209,604 - Dsui_1154 0.32 -0.3
1,209,717 + +1.0
1,209,724 + Dsui_1154 0.40 +0.4
1,209,814 + Dsui_1154 0.46 -0.8

Or see this region's nucleotide sequence