Experiment: Anaerobic growth in rich media with perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1105 and Dsui_1106 are separated by 357 nucleotides Dsui_1106 and Dsui_1107 are separated by 38 nucleotides Dsui_1107 and Dsui_1108 are separated by 254 nucleotides
Dsui_1105: Dsui_1105 - methylmalonyl-CoA mutase family protein, at 1,148,651 to 1,151,932
_1105
Dsui_1106: Dsui_1106 - nitroreductase, at 1,152,290 to 1,152,982
_1106
Dsui_1107: Dsui_1107 - cAMP-binding protein, at 1,153,021 to 1,153,695
_1107
Dsui_1108: Dsui_1108 - AMP-forming long-chain acyl-CoA synthetase, at 1,153,950 to 1,155,929
_1108
Position (kb)
1152
1153 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1151.442 kb on - strand, within Dsui_1105 at 1151.484 kb on + strand, within Dsui_1105 at 1151.584 kb on - strand, within Dsui_1105 at 1151.611 kb on - strand at 1151.700 kb on - strand at 1151.724 kb on + strand at 1151.856 kb on - strand at 1151.871 kb on + strand at 1151.879 kb on - strand at 1151.910 kb on + strand at 1152.030 kb on + strand at 1152.032 kb on - strand at 1152.043 kb on - strand at 1152.058 kb on + strand at 1152.142 kb on + strand at 1152.173 kb on - strand at 1152.179 kb on - strand at 1152.212 kb on + strand at 1152.371 kb on + strand, within Dsui_1106 at 1152.371 kb on + strand at 1152.376 kb on + strand, within Dsui_1106 at 1152.379 kb on - strand, within Dsui_1106 at 1152.379 kb on - strand, within Dsui_1106 at 1152.379 kb on - strand, within Dsui_1106 at 1152.379 kb on - strand, within Dsui_1106 at 1152.496 kb on + strand, within Dsui_1106 at 1152.496 kb on + strand, within Dsui_1106 at 1152.566 kb on + strand, within Dsui_1106 at 1152.754 kb on + strand, within Dsui_1106 at 1152.838 kb on + strand, within Dsui_1106 at 1152.883 kb on + strand, within Dsui_1106 at 1153.088 kb on + strand at 1153.122 kb on - strand, within Dsui_1107 at 1153.234 kb on + strand, within Dsui_1107 at 1153.290 kb on + strand, within Dsui_1107 at 1153.335 kb on - strand, within Dsui_1107 at 1153.553 kb on + strand, within Dsui_1107 at 1153.674 kb on - strand at 1153.803 kb on + strand at 1153.807 kb on - strand at 1153.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor remove 1,151,442 - Dsui_1105 0.85 +0.1 1,151,484 + Dsui_1105 0.86 -0.2 1,151,584 - Dsui_1105 0.89 +0.5 1,151,611 - +0.6 1,151,700 - +0.1 1,151,724 + -0.2 1,151,856 - -0.1 1,151,871 + -0.0 1,151,879 - -0.7 1,151,910 + +0.2 1,152,030 + -0.1 1,152,032 - +0.0 1,152,043 - +0.1 1,152,058 + +0.3 1,152,142 + -1.2 1,152,173 - +0.1 1,152,179 - -0.1 1,152,212 + -1.4 1,152,371 + Dsui_1106 0.12 +0.7 1,152,371 + -0.7 1,152,376 + Dsui_1106 0.12 +0.3 1,152,379 - Dsui_1106 0.13 -0.5 1,152,379 - Dsui_1106 0.13 +0.1 1,152,379 - Dsui_1106 0.13 +0.3 1,152,379 - Dsui_1106 0.13 -0.0 1,152,496 + Dsui_1106 0.30 +0.6 1,152,496 + Dsui_1106 0.30 +2.4 1,152,566 + Dsui_1106 0.40 +0.3 1,152,754 + Dsui_1106 0.67 +2.1 1,152,838 + Dsui_1106 0.79 +0.9 1,152,883 + Dsui_1106 0.86 -1.1 1,153,088 + +0.6 1,153,122 - Dsui_1107 0.15 -2.0 1,153,234 + Dsui_1107 0.32 -0.2 1,153,290 + Dsui_1107 0.40 -0.5 1,153,335 - Dsui_1107 0.47 +0.5 1,153,553 + Dsui_1107 0.79 -1.0 1,153,674 - +0.7 1,153,803 + +0.0 1,153,807 - -0.4 1,153,807 - +0.4
Or see this region's nucleotide sequence