Experiment: Anaerobic growth in rich media with perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0708 and Dsui_0709 are separated by 64 nucleotides Dsui_0709 and Dsui_0710 are separated by 54 nucleotides Dsui_0710 and Dsui_0711 overlap by 4 nucleotides
Dsui_0708: Dsui_0708 - PAS domain S-box, at 702,724 to 704,817
_0708
Dsui_0709: Dsui_0709 - bacterioferritin, at 704,882 to 705,361
_0709
Dsui_0710: Dsui_0710 - competence/damage-inducible protein CinA-like protein, at 705,416 to 705,931
_0710
Dsui_0711: Dsui_0711 - phosphatidylglycerophosphatase A-like protein, at 705,928 to 706,446
_0711
Position (kb) 704
705
706 Strain fitness (log2 ratio) -2
-1
0
1 at 703.969 kb on - strand, within Dsui_0708 at 703.988 kb on - strand, within Dsui_0708 at 703.997 kb on + strand, within Dsui_0708 at 704.093 kb on + strand at 704.142 kb on - strand, within Dsui_0708 at 704.190 kb on + strand, within Dsui_0708 at 704.199 kb on - strand at 704.211 kb on + strand, within Dsui_0708 at 704.226 kb on + strand, within Dsui_0708 at 704.234 kb on - strand, within Dsui_0708 at 704.338 kb on + strand, within Dsui_0708 at 704.423 kb on - strand at 704.428 kb on - strand, within Dsui_0708 at 704.485 kb on + strand, within Dsui_0708 at 704.527 kb on - strand, within Dsui_0708 at 704.548 kb on - strand, within Dsui_0708 at 704.560 kb on - strand at 704.560 kb on - strand, within Dsui_0708 at 704.595 kb on + strand, within Dsui_0708 at 704.614 kb on - strand at 704.632 kb on - strand at 704.701 kb on - strand at 704.763 kb on - strand at 704.764 kb on - strand at 704.821 kb on + strand at 705.026 kb on - strand, within Dsui_0709 at 705.078 kb on - strand, within Dsui_0709 at 705.162 kb on + strand, within Dsui_0709 at 705.175 kb on + strand, within Dsui_0709 at 705.180 kb on + strand, within Dsui_0709 at 705.324 kb on + strand at 705.334 kb on + strand at 705.414 kb on + strand at 705.535 kb on - strand, within Dsui_0710 at 705.541 kb on - strand, within Dsui_0710 at 705.654 kb on + strand, within Dsui_0710 at 705.715 kb on - strand, within Dsui_0710 at 705.786 kb on - strand, within Dsui_0710 at 705.897 kb on + strand at 705.898 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor remove 703,969 - Dsui_0708 0.59 -0.1 703,988 - Dsui_0708 0.60 +0.2 703,997 + Dsui_0708 0.61 -1.0 704,093 + -1.8 704,142 - Dsui_0708 0.68 +0.2 704,190 + Dsui_0708 0.70 -0.3 704,199 - +1.0 704,211 + Dsui_0708 0.71 -0.2 704,226 + Dsui_0708 0.72 -0.2 704,234 - Dsui_0708 0.72 +0.7 704,338 + Dsui_0708 0.77 -0.4 704,423 - -0.3 704,428 - Dsui_0708 0.81 -0.4 704,485 + Dsui_0708 0.84 +0.5 704,527 - Dsui_0708 0.86 +0.3 704,548 - Dsui_0708 0.87 -0.1 704,560 - +0.4 704,560 - Dsui_0708 0.88 +0.5 704,595 + Dsui_0708 0.89 -0.2 704,614 - +0.3 704,632 - +1.0 704,701 - -1.0 704,763 - -1.0 704,764 - +0.6 704,821 + -0.2 705,026 - Dsui_0709 0.30 -0.9 705,078 - Dsui_0709 0.41 -0.2 705,162 + Dsui_0709 0.58 -1.0 705,175 + Dsui_0709 0.61 -0.1 705,180 + Dsui_0709 0.62 -0.1 705,324 + -0.0 705,334 + +1.2 705,414 + +0.3 705,535 - Dsui_0710 0.23 +0.4 705,541 - Dsui_0710 0.24 +0.0 705,654 + Dsui_0710 0.46 -2.1 705,715 - Dsui_0710 0.58 -0.1 705,786 - Dsui_0710 0.72 -0.2 705,897 + +0.2 705,898 + +0.0
Or see this region's nucleotide sequence