Strain Fitness in Dechlorosoma suillum PS around Dsui_0114

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0112 and Dsui_0113 are separated by 21 nucleotidesDsui_0113 and Dsui_0114 are separated by 13 nucleotidesDsui_0114 and Dsui_0115 are separated by 203 nucleotidesDsui_0115 and Dsui_0116 are separated by 116 nucleotides Dsui_0112: Dsui_0112 - serine/threonine protein kinase, at 110,720 to 112,012 _0112 Dsui_0113: Dsui_0113 - hypothetical protein, at 112,034 to 112,297 _0113 Dsui_0114: Dsui_0114 - ammonium transporter, at 112,311 to 113,750 _0114 Dsui_0115: Dsui_0115 - hypothetical protein, at 113,954 to 114,448 _0115 Dsui_0116: Dsui_0116 - alkylhydroperoxidase AhpD family core domain protein, at 114,565 to 114,924 _0116 Position (kb) 112 113 114Strain fitness (log2 ratio) -2 -1 0 1 2at 111.335 kb on - strand, within Dsui_0112at 111.440 kb on - strand, within Dsui_0112at 111.472 kb on + strand, within Dsui_0112at 111.480 kb on - strand, within Dsui_0112at 111.504 kb on - strand, within Dsui_0112at 111.507 kb on + strand, within Dsui_0112at 111.515 kb on - strand, within Dsui_0112at 111.532 kb on + strand, within Dsui_0112at 111.540 kb on - strandat 111.654 kb on - strandat 111.656 kb on + strand, within Dsui_0112at 111.664 kb on - strand, within Dsui_0112at 111.738 kb on - strand, within Dsui_0112at 111.753 kb on + strand, within Dsui_0112at 111.866 kb on + strand, within Dsui_0112at 111.867 kb on + strand, within Dsui_0112at 111.877 kb on + strand, within Dsui_0112at 111.885 kb on - strandat 111.892 kb on + strandat 111.905 kb on + strandat 111.910 kb on + strandat 111.988 kb on - strandat 112.040 kb on - strandat 112.052 kb on - strandat 112.059 kb on + strandat 112.060 kb on - strandat 112.228 kb on + strand, within Dsui_0113at 112.236 kb on - strand, within Dsui_0113at 112.268 kb on - strandat 112.299 kb on + strandat 112.300 kb on - strandat 112.300 kb on - strandat 112.300 kb on - strandat 112.385 kb on + strandat 112.389 kb on - strandat 112.431 kb on + strandat 112.434 kb on - strandat 112.562 kb on + strand, within Dsui_0114at 112.562 kb on + strand, within Dsui_0114at 112.570 kb on - strand, within Dsui_0114at 112.601 kb on - strandat 112.613 kb on + strand, within Dsui_0114at 112.620 kb on + strand, within Dsui_0114at 112.623 kb on - strand, within Dsui_0114at 112.740 kb on + strandat 112.748 kb on - strand, within Dsui_0114at 112.763 kb on - strand, within Dsui_0114at 112.886 kb on - strandat 112.913 kb on - strand, within Dsui_0114at 112.918 kb on - strand, within Dsui_0114at 112.928 kb on - strand, within Dsui_0114at 112.935 kb on + strand, within Dsui_0114at 112.941 kb on + strandat 112.949 kb on - strand, within Dsui_0114at 112.966 kb on + strandat 112.990 kb on + strand, within Dsui_0114at 112.990 kb on + strandat 112.990 kb on + strand, within Dsui_0114at 113.030 kb on + strand, within Dsui_0114at 113.115 kb on + strandat 113.146 kb on + strandat 113.173 kb on - strand, within Dsui_0114at 113.187 kb on + strand, within Dsui_0114at 113.255 kb on + strandat 113.287 kb on - strand, within Dsui_0114at 113.321 kb on + strand, within Dsui_0114at 113.336 kb on - strand, within Dsui_0114at 113.383 kb on + strandat 113.427 kb on - strand, within Dsui_0114at 113.437 kb on - strand, within Dsui_0114at 113.437 kb on - strand, within Dsui_0114at 113.443 kb on - strand, within Dsui_0114at 113.446 kb on + strand, within Dsui_0114at 113.457 kb on + strand, within Dsui_0114at 113.462 kb on + strand, within Dsui_0114at 113.497 kb on - strand, within Dsui_0114at 113.533 kb on + strandat 113.543 kb on + strand, within Dsui_0114at 113.636 kb on + strandat 113.644 kb on - strandat 113.685 kb on - strandat 113.726 kb on - strandat 113.751 kb on - strandat 113.795 kb on - strandat 113.805 kb on - strandat 113.896 kb on + strandat 113.896 kb on + strandat 113.904 kb on - strandat 113.904 kb on - strandat 113.985 kb on - strandat 113.999 kb on + strandat 114.006 kb on - strand, within Dsui_0115at 114.030 kb on - strand, within Dsui_0115at 114.051 kb on - strand, within Dsui_0115at 114.062 kb on + strand, within Dsui_0115at 114.121 kb on + strand, within Dsui_0115at 114.185 kb on - strand, within Dsui_0115at 114.206 kb on - strand, within Dsui_0115at 114.285 kb on + strand, within Dsui_0115at 114.293 kb on - strand, within Dsui_0115at 114.331 kb on - strand, within Dsui_0115at 114.421 kb on + strandat 114.444 kb on - strandat 114.496 kb on - strandat 114.499 kb on + strandat 114.514 kb on + strandat 114.562 kb on + strandat 114.615 kb on - strandat 114.621 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor
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111,335 - Dsui_0112 0.48 +0.0
111,440 - Dsui_0112 0.56 -0.3
111,472 + Dsui_0112 0.58 -0.4
111,480 - Dsui_0112 0.59 -0.1
111,504 - Dsui_0112 0.61 -0.3
111,507 + Dsui_0112 0.61 -1.5
111,515 - Dsui_0112 0.61 -0.9
111,532 + Dsui_0112 0.63 -0.2
111,540 - -0.5
111,654 - +1.2
111,656 + Dsui_0112 0.72 -0.1
111,664 - Dsui_0112 0.73 -0.5
111,738 - Dsui_0112 0.79 +0.0
111,753 + Dsui_0112 0.80 -0.1
111,866 + Dsui_0112 0.89 +0.2
111,867 + Dsui_0112 0.89 +0.0
111,877 + Dsui_0112 0.89 +0.6
111,885 - +0.1
111,892 + +1.1
111,905 + +0.1
111,910 + +0.2
111,988 - -1.4
112,040 - -0.7
112,052 - +0.1
112,059 + +0.1
112,060 - +0.6
112,228 + Dsui_0113 0.73 -0.3
112,236 - Dsui_0113 0.77 +0.6
112,268 - +2.1
112,299 + +0.5
112,300 - -0.2
112,300 - -0.2
112,300 - -0.8
112,385 + -0.6
112,389 - +0.4
112,431 + +1.1
112,434 - +0.5
112,562 + Dsui_0114 0.17 +0.3
112,562 + Dsui_0114 0.17 -0.0
112,570 - Dsui_0114 0.18 -0.1
112,601 - +2.1
112,613 + Dsui_0114 0.21 -0.5
112,620 + Dsui_0114 0.21 -0.4
112,623 - Dsui_0114 0.22 +0.8
112,740 + -2.3
112,748 - Dsui_0114 0.30 -0.5
112,763 - Dsui_0114 0.31 -0.3
112,886 - -2.2
112,913 - Dsui_0114 0.42 +0.6
112,918 - Dsui_0114 0.42 -1.9
112,928 - Dsui_0114 0.43 +0.4
112,935 + Dsui_0114 0.43 -0.4
112,941 + -1.2
112,949 - Dsui_0114 0.44 +0.0
112,966 + -0.0
112,990 + Dsui_0114 0.47 -0.6
112,990 + -1.5
112,990 + Dsui_0114 0.47 -0.2
113,030 + Dsui_0114 0.50 +0.2
113,115 + -0.6
113,146 + -1.2
113,173 - Dsui_0114 0.60 +0.1
113,187 + Dsui_0114 0.61 -0.8
113,255 + +0.6
113,287 - Dsui_0114 0.68 -0.6
113,321 + Dsui_0114 0.70 +0.6
113,336 - Dsui_0114 0.71 -0.5
113,383 + +0.7
113,427 - Dsui_0114 0.78 -0.4
113,437 - Dsui_0114 0.78 -0.5
113,437 - Dsui_0114 0.78 -0.1
113,443 - Dsui_0114 0.79 -0.3
113,446 + Dsui_0114 0.79 +0.9
113,457 + Dsui_0114 0.80 -1.8
113,462 + Dsui_0114 0.80 +0.8
113,497 - Dsui_0114 0.82 +0.1
113,533 + -0.3
113,543 + Dsui_0114 0.86 -0.1
113,636 + -0.4
113,644 - +0.3
113,685 - +0.7
113,726 - +0.4
113,751 - -0.4
113,795 - -0.4
113,805 - -0.2
113,896 + +0.2
113,896 + +0.1
113,904 - -0.1
113,904 - -0.4
113,985 - -0.2
113,999 + +0.2
114,006 - Dsui_0115 0.11 -0.2
114,030 - Dsui_0115 0.15 -1.0
114,051 - Dsui_0115 0.20 -0.0
114,062 + Dsui_0115 0.22 -0.7
114,121 + Dsui_0115 0.34 -0.6
114,185 - Dsui_0115 0.47 -0.2
114,206 - Dsui_0115 0.51 +0.1
114,285 + Dsui_0115 0.67 +0.4
114,293 - Dsui_0115 0.68 -0.6
114,331 - Dsui_0115 0.76 -0.1
114,421 + -0.5
114,444 - -0.4
114,496 - +0.8
114,499 + +0.4
114,514 + +1.8
114,562 + +0.7
114,615 - +0.1
114,621 + -1.1

Or see this region's nucleotide sequence