Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_889 and HP15_890 are separated by 19 nucleotides HP15_890 and HP15_891 overlap by 4 nucleotides HP15_891 and HP15_892 are separated by 8 nucleotides HP15_892 and HP15_893 are separated by 148 nucleotides
HP15_889: HP15_889 - cobalamin synthesis protein/P47K family protein, at 903,343 to 904,329
_889
HP15_890: HP15_890 - methyltransferase-related protein, at 904,349 to 904,972
_890
HP15_891: HP15_891 - conserved hypothetical protein, at 904,969 to 905,970
_891
HP15_892: HP15_892 - uncharacterized conserved protein UCP029543, at 905,979 to 906,338
_892
HP15_893: HP15_893 - hypothetical protein, at 906,487 to 907,551
_893
Position (kb) 904
905
906 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 904.064 kb on + strand, within HP15_889 at 904.146 kb on + strand, within HP15_889 at 904.154 kb on - strand, within HP15_889 at 904.204 kb on + strand, within HP15_889 at 904.207 kb on - strand, within HP15_889 at 904.242 kb on - strand at 904.468 kb on - strand, within HP15_890 at 904.610 kb on - strand, within HP15_890 at 904.610 kb on - strand, within HP15_890 at 904.828 kb on - strand, within HP15_890 at 904.856 kb on + strand, within HP15_890 at 904.856 kb on + strand, within HP15_890 at 904.864 kb on - strand, within HP15_890 at 904.942 kb on + strand at 904.998 kb on + strand at 905.018 kb on - strand at 905.234 kb on + strand, within HP15_891 at 905.288 kb on + strand, within HP15_891 at 905.290 kb on + strand, within HP15_891 at 905.394 kb on + strand, within HP15_891 at 905.718 kb on + strand, within HP15_891 at 905.745 kb on + strand, within HP15_891 at 905.780 kb on + strand, within HP15_891 at 905.989 kb on - strand at 906.023 kb on + strand, within HP15_892 at 906.029 kb on - strand, within HP15_892 at 906.082 kb on - strand, within HP15_892 at 906.169 kb on - strand, within HP15_892 at 906.335 kb on - strand at 906.526 kb on + strand at 906.528 kb on + strand at 906.564 kb on - strand at 906.574 kb on - strand at 906.648 kb on + strand, within HP15_893 at 906.665 kb on + strand, within HP15_893 at 906.665 kb on + strand, within HP15_893 at 906.670 kb on + strand, within HP15_893 at 906.756 kb on + strand, within HP15_893 at 906.764 kb on - strand, within HP15_893 at 906.783 kb on + strand, within HP15_893 at 906.783 kb on + strand, within HP15_893 at 906.786 kb on - strand, within HP15_893 at 906.789 kb on + strand, within HP15_893
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 904,064 + HP15_889 0.73 +0.8 904,146 + HP15_889 0.81 +0.1 904,154 - HP15_889 0.82 -0.3 904,204 + HP15_889 0.87 +0.0 904,207 - HP15_889 0.88 +0.0 904,242 - -0.3 904,468 - HP15_890 0.19 -0.6 904,610 - HP15_890 0.42 +1.0 904,610 - HP15_890 0.42 -0.4 904,828 - HP15_890 0.77 -0.6 904,856 + HP15_890 0.81 +0.1 904,856 + HP15_890 0.81 +1.0 904,864 - HP15_890 0.83 +1.0 904,942 + +2.6 904,998 + +1.5 905,018 - -0.6 905,234 + HP15_891 0.26 -0.5 905,288 + HP15_891 0.32 -3.3 905,290 + HP15_891 0.32 -0.9 905,394 + HP15_891 0.42 -1.0 905,718 + HP15_891 0.75 +1.6 905,745 + HP15_891 0.77 -0.4 905,780 + HP15_891 0.81 -0.4 905,989 - -0.3 906,023 + HP15_892 0.12 -0.4 906,029 - HP15_892 0.14 -0.7 906,082 - HP15_892 0.29 -2.6 906,169 - HP15_892 0.53 -0.3 906,335 - -0.7 906,526 + +0.5 906,528 + +0.1 906,564 - +0.7 906,574 - +0.2 906,648 + HP15_893 0.15 +0.0 906,665 + HP15_893 0.17 +0.8 906,665 + HP15_893 0.17 -0.7 906,670 + HP15_893 0.17 -0.4 906,756 + HP15_893 0.25 +0.7 906,764 - HP15_893 0.26 -0.3 906,783 + HP15_893 0.28 +0.4 906,783 + HP15_893 0.28 -1.5 906,786 - HP15_893 0.28 +0.4 906,789 + HP15_893 0.28 -0.6
Or see this region's nucleotide sequence