Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_855 and HP15_856 are separated by 6 nucleotides HP15_856 and HP15_857 are separated by 138 nucleotides HP15_857 and HP15_858 are separated by 56 nucleotides
HP15_855: HP15_855 - M23 peptidase domain protein, at 872,208 to 873,176
_855
HP15_856: HP15_856 - UspA domain protein, at 873,183 to 873,602
_856
HP15_857: HP15_857 - sodium-dependent transporter family protein, at 873,741 to 875,123
_857
HP15_858: HP15_858 - phenylalanine aminotransferase (EC 2.6.1.57) <small>(from data)</small>, at 875,180 to 876,367
_858
Position (kb) 873
874
875
876 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 872.856 kb on - strand, within HP15_855 at 873.014 kb on + strand, within HP15_855 at 873.031 kb on + strand, within HP15_855 at 873.052 kb on + strand, within HP15_855 at 873.151 kb on + strand at 873.304 kb on - strand, within HP15_856 at 873.363 kb on + strand, within HP15_856 at 873.436 kb on - strand, within HP15_856 at 873.443 kb on + strand, within HP15_856 at 873.443 kb on + strand, within HP15_856 at 873.489 kb on + strand, within HP15_856 at 873.505 kb on + strand, within HP15_856 at 873.524 kb on + strand, within HP15_856 at 873.570 kb on - strand at 873.599 kb on + strand at 873.812 kb on + strand at 874.077 kb on + strand, within HP15_857 at 874.085 kb on - strand, within HP15_857 at 874.085 kb on - strand, within HP15_857 at 874.249 kb on - strand, within HP15_857 at 874.400 kb on + strand, within HP15_857 at 874.428 kb on + strand, within HP15_857 at 874.436 kb on - strand, within HP15_857 at 874.436 kb on - strand, within HP15_857 at 874.436 kb on - strand, within HP15_857 at 874.523 kb on - strand, within HP15_857 at 874.887 kb on + strand, within HP15_857 at 874.895 kb on - strand, within HP15_857 at 875.057 kb on + strand at 875.065 kb on - strand at 875.065 kb on - strand at 875.065 kb on - strand at 875.066 kb on - strand at 875.077 kb on + strand at 875.105 kb on + strand at 875.303 kb on + strand, within HP15_858 at 875.418 kb on + strand, within HP15_858 at 875.499 kb on + strand, within HP15_858 at 875.543 kb on - strand, within HP15_858 at 875.588 kb on - strand, within HP15_858 at 875.620 kb on + strand, within HP15_858 at 875.689 kb on - strand, within HP15_858 at 875.694 kb on - strand, within HP15_858 at 875.744 kb on + strand, within HP15_858 at 875.866 kb on + strand, within HP15_858 at 875.886 kb on + strand, within HP15_858 at 875.952 kb on - strand, within HP15_858 at 875.964 kb on + strand, within HP15_858 at 875.984 kb on - strand, within HP15_858 at 876.012 kb on + strand, within HP15_858 at 876.012 kb on + strand, within HP15_858
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 872,856 - HP15_855 0.67 -1.0 873,014 + HP15_855 0.83 -0.8 873,031 + HP15_855 0.85 -2.3 873,052 + HP15_855 0.87 +0.2 873,151 + +0.7 873,304 - HP15_856 0.29 +0.0 873,363 + HP15_856 0.43 -0.3 873,436 - HP15_856 0.60 -0.3 873,443 + HP15_856 0.62 +0.5 873,443 + HP15_856 0.62 -1.0 873,489 + HP15_856 0.73 +2.6 873,505 + HP15_856 0.77 -1.5 873,524 + HP15_856 0.81 -1.1 873,570 - +0.2 873,599 + +0.0 873,812 + +0.2 874,077 + HP15_857 0.24 +0.4 874,085 - HP15_857 0.25 +1.3 874,085 - HP15_857 0.25 -0.2 874,249 - HP15_857 0.37 +0.2 874,400 + HP15_857 0.48 +0.8 874,428 + HP15_857 0.50 -0.4 874,436 - HP15_857 0.50 -2.0 874,436 - HP15_857 0.50 +0.3 874,436 - HP15_857 0.50 -0.8 874,523 - HP15_857 0.57 +1.3 874,887 + HP15_857 0.83 +1.2 874,895 - HP15_857 0.83 -0.7 875,057 + -0.2 875,065 - +0.3 875,065 - +1.4 875,065 - +0.2 875,066 - -0.9 875,077 + -0.3 875,105 + +0.5 875,303 + HP15_858 0.10 -1.6 875,418 + HP15_858 0.20 +0.3 875,499 + HP15_858 0.27 -3.0 875,543 - HP15_858 0.31 -1.2 875,588 - HP15_858 0.34 -0.3 875,620 + HP15_858 0.37 +0.2 875,689 - HP15_858 0.43 +0.4 875,694 - HP15_858 0.43 -0.5 875,744 + HP15_858 0.47 +1.4 875,866 + HP15_858 0.58 +0.5 875,886 + HP15_858 0.59 -0.8 875,952 - HP15_858 0.65 -0.5 875,964 + HP15_858 0.66 +0.3 875,984 - HP15_858 0.68 -0.4 876,012 + HP15_858 0.70 +0.4 876,012 + HP15_858 0.70 -0.2
Or see this region's nucleotide sequence