Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_840 and HP15_841 are separated by 102 nucleotides HP15_841 and HP15_842 are separated by 284 nucleotides HP15_842 and HP15_843 are separated by 40 nucleotides HP15_843 and HP15_844 are separated by 3 nucleotides
HP15_840: HP15_840 - ABC transporter, transmembrane region: ABC transporter, at 858,883 to 860,685
_840
HP15_841: HP15_841 - YaiI/YqxD-like protein, at 860,788 to 861,240
_841
HP15_842: HP15_842 - phosphoglycerate mutase family protein, at 861,525 to 862,097
_842
HP15_843: HP15_843 - PhnA protein, at 862,138 to 862,476
_843
HP15_844: HP15_844 - protein containing DUF533, at 862,480 to 863,199
_844
Position (kb) 861
862
863 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 860.689 kb on - strand at 860.853 kb on + strand, within HP15_841 at 860.948 kb on + strand, within HP15_841 at 861.019 kb on - strand, within HP15_841 at 861.192 kb on - strand, within HP15_841 at 861.192 kb on - strand, within HP15_841 at 861.199 kb on + strand at 861.276 kb on - strand at 861.361 kb on - strand at 861.614 kb on - strand, within HP15_842 at 861.636 kb on + strand, within HP15_842 at 861.636 kb on + strand, within HP15_842 at 861.654 kb on + strand, within HP15_842 at 861.751 kb on - strand, within HP15_842 at 861.778 kb on + strand, within HP15_842 at 861.999 kb on - strand, within HP15_842 at 861.999 kb on - strand, within HP15_842 at 862.068 kb on + strand at 862.154 kb on - strand at 862.198 kb on + strand, within HP15_843 at 862.203 kb on + strand, within HP15_843 at 862.343 kb on - strand, within HP15_843 at 862.522 kb on + strand at 862.573 kb on - strand, within HP15_844 at 862.633 kb on + strand, within HP15_844 at 862.644 kb on + strand, within HP15_844 at 862.665 kb on - strand, within HP15_844 at 862.670 kb on - strand, within HP15_844 at 862.670 kb on - strand, within HP15_844 at 862.682 kb on - strand, within HP15_844 at 862.796 kb on + strand, within HP15_844 at 862.841 kb on + strand, within HP15_844 at 862.841 kb on - strand, within HP15_844 at 863.000 kb on - strand, within HP15_844 at 863.092 kb on - strand, within HP15_844
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 860,689 - -0.6 860,853 + HP15_841 0.14 -0.5 860,948 + HP15_841 0.35 +0.2 861,019 - HP15_841 0.51 +0.2 861,192 - HP15_841 0.89 +0.4 861,192 - HP15_841 0.89 +1.0 861,199 + +0.0 861,276 - -0.2 861,361 - +0.5 861,614 - HP15_842 0.16 -2.6 861,636 + HP15_842 0.19 -0.1 861,636 + HP15_842 0.19 -1.2 861,654 + HP15_842 0.23 +0.7 861,751 - HP15_842 0.39 -0.3 861,778 + HP15_842 0.44 -2.5 861,999 - HP15_842 0.83 +0.6 861,999 - HP15_842 0.83 +0.0 862,068 + +0.2 862,154 - -0.6 862,198 + HP15_843 0.18 -0.0 862,203 + HP15_843 0.19 -0.7 862,343 - HP15_843 0.60 -0.5 862,522 + -2.8 862,573 - HP15_844 0.13 +0.3 862,633 + HP15_844 0.21 +0.1 862,644 + HP15_844 0.23 +0.3 862,665 - HP15_844 0.26 +0.9 862,670 - HP15_844 0.26 +0.0 862,670 - HP15_844 0.26 -0.6 862,682 - HP15_844 0.28 -0.1 862,796 + HP15_844 0.44 -0.1 862,841 + HP15_844 0.50 +0.3 862,841 - HP15_844 0.50 -1.0 863,000 - HP15_844 0.72 -0.4 863,092 - HP15_844 0.85 +1.1
Or see this region's nucleotide sequence