Strain Fitness in Marinobacter adhaerens HP15 around HP15_67

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_66 and HP15_67 are separated by 333 nucleotidesHP15_67 and HP15_68 are separated by 215 nucleotides HP15_66: HP15_66 - adenylate cyclase, at 70,790 to 72,199 _66 HP15_67: HP15_67 - short-chain dehydrogenase/reductase SDR, at 72,533 to 72,934 _67 HP15_68: HP15_68 - sensory box/FOG: EAL domain/GGDEF domain containing protein, at 73,150 to 76,638 _68 Position (kb) 72 73Strain fitness (log2 ratio) -2 -1 0 1 2at 71.561 kb on - strand, within HP15_66at 71.561 kb on - strand, within HP15_66at 71.709 kb on - strand, within HP15_66at 71.715 kb on + strand, within HP15_66at 71.720 kb on + strand, within HP15_66at 71.728 kb on - strand, within HP15_66at 71.736 kb on + strand, within HP15_66at 71.888 kb on - strand, within HP15_66at 71.907 kb on + strand, within HP15_66at 71.907 kb on + strand, within HP15_66at 72.087 kb on - strandat 72.094 kb on - strandat 72.167 kb on + strandat 72.167 kb on + strandat 72.284 kb on + strandat 72.292 kb on - strandat 72.292 kb on - strandat 72.413 kb on + strandat 72.555 kb on - strandat 72.584 kb on - strand, within HP15_67at 72.598 kb on + strand, within HP15_67at 72.636 kb on - strand, within HP15_67at 72.636 kb on - strand, within HP15_67at 72.638 kb on + strand, within HP15_67at 72.643 kb on + strand, within HP15_67at 72.643 kb on + strand, within HP15_67at 72.649 kb on - strand, within HP15_67at 72.665 kb on + strand, within HP15_67at 72.673 kb on - strand, within HP15_67at 72.739 kb on + strand, within HP15_67at 73.065 kb on - strandat 73.084 kb on + strandat 73.107 kb on + strandat 73.115 kb on - strandat 73.156 kb on + strandat 73.306 kb on - strandat 73.331 kb on + strandat 73.339 kb on - strandat 73.396 kb on + strandat 73.414 kb on - strandat 73.444 kb on - strandat 73.496 kb on - strandat 73.511 kb on + strand, within HP15_68at 73.569 kb on + strand, within HP15_68at 73.577 kb on - strand, within HP15_68at 73.579 kb on + strand, within HP15_68at 73.579 kb on - strand, within HP15_68at 73.623 kb on + strand, within HP15_68at 73.648 kb on + strand, within HP15_68at 73.726 kb on - strand, within HP15_68at 73.761 kb on - strand, within HP15_68at 73.802 kb on + strand, within HP15_68at 73.832 kb on + strand, within HP15_68at 73.841 kb on - strand, within HP15_68at 73.874 kb on + strand, within HP15_68at 73.887 kb on - strand, within HP15_68at 73.906 kb on - strand, within HP15_68at 73.912 kb on - strand, within HP15_68at 73.924 kb on - strand, within HP15_68

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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71,561 - HP15_66 0.55 -0.1
71,561 - HP15_66 0.55 +0.3
71,709 - HP15_66 0.65 -1.3
71,715 + HP15_66 0.66 -0.6
71,720 + HP15_66 0.66 +0.2
71,728 - HP15_66 0.67 -0.0
71,736 + HP15_66 0.67 -1.3
71,888 - HP15_66 0.78 -0.0
71,907 + HP15_66 0.79 +0.3
71,907 + HP15_66 0.79 -0.5
72,087 - +0.6
72,094 - -0.7
72,167 + +0.7
72,167 + -2.3
72,284 + -1.7
72,292 - +0.5
72,292 - -0.7
72,413 + +0.6
72,555 - -0.3
72,584 - HP15_67 0.13 -0.3
72,598 + HP15_67 0.16 +0.4
72,636 - HP15_67 0.26 -1.0
72,636 - HP15_67 0.26 +0.2
72,638 + HP15_67 0.26 -0.1
72,643 + HP15_67 0.27 -1.3
72,643 + HP15_67 0.27 -1.7
72,649 - HP15_67 0.29 +0.6
72,665 + HP15_67 0.33 -1.0
72,673 - HP15_67 0.35 -0.5
72,739 + HP15_67 0.51 -0.6
73,065 - +0.0
73,084 + +0.6
73,107 + +0.3
73,115 - +0.3
73,156 + +0.0
73,306 - -0.4
73,331 + +0.2
73,339 - -0.6
73,396 + +0.4
73,414 - +0.3
73,444 - -0.5
73,496 - -1.0
73,511 + HP15_68 0.10 +0.6
73,569 + HP15_68 0.12 -1.3
73,577 - HP15_68 0.12 +0.5
73,579 + HP15_68 0.12 +1.0
73,579 - HP15_68 0.12 +1.3
73,623 + HP15_68 0.14 -2.3
73,648 + HP15_68 0.14 -0.0
73,726 - HP15_68 0.17 -2.0
73,761 - HP15_68 0.18 +0.3
73,802 + HP15_68 0.19 -0.4
73,832 + HP15_68 0.20 -2.0
73,841 - HP15_68 0.20 -0.3
73,874 + HP15_68 0.21 +1.9
73,887 - HP15_68 0.21 -1.7
73,906 - HP15_68 0.22 +1.3
73,912 - HP15_68 0.22 -1.2
73,924 - HP15_68 0.22 +0.3

Or see this region's nucleotide sequence