Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g176 and HP15_p187g177 are separated by 648 nucleotides HP15_p187g177 and HP15_p187g178 are separated by 17 nucleotides
HP15_p187g176: HP15_p187g176 - conserved hypothetical protein, at 182,847 to 184,196
_p187g176
HP15_p187g177: HP15_p187g177 - carboxyl-terminal protease-like protein, at 184,845 to 186,347
_p187g177
HP15_p187g178: HP15_p187g178 - membrane lipoprotein lipid attachment site-like protein, at 186,365 to 187,006
_p187g178
Position (kb)
184
185
186
187 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 183.847 kb on + strand, within HP15_p187g176 at 183.855 kb on - strand, within HP15_p187g176 at 183.855 kb on - strand, within HP15_p187g176 at 183.855 kb on - strand, within HP15_p187g176 at 183.894 kb on - strand, within HP15_p187g176 at 183.946 kb on - strand, within HP15_p187g176 at 183.986 kb on + strand, within HP15_p187g176 at 184.009 kb on + strand, within HP15_p187g176 at 184.082 kb on + strand at 184.090 kb on - strand at 184.113 kb on + strand at 184.133 kb on - strand at 184.133 kb on - strand at 184.136 kb on + strand at 184.151 kb on + strand at 184.151 kb on + strand at 184.159 kb on - strand at 184.174 kb on - strand at 184.239 kb on + strand at 184.258 kb on - strand at 184.265 kb on + strand at 184.308 kb on + strand at 184.308 kb on + strand at 184.308 kb on + strand at 184.316 kb on - strand at 184.316 kb on - strand at 184.316 kb on - strand at 184.316 kb on - strand at 184.334 kb on - strand at 184.348 kb on - strand at 184.348 kb on - strand at 184.408 kb on + strand at 184.431 kb on - strand at 184.431 kb on - strand at 184.437 kb on - strand at 184.442 kb on + strand at 184.447 kb on + strand at 184.447 kb on + strand at 184.457 kb on + strand at 184.457 kb on + strand at 184.475 kb on - strand at 184.480 kb on - strand at 184.487 kb on + strand at 184.497 kb on + strand at 184.514 kb on + strand at 184.514 kb on - strand at 184.519 kb on - strand at 184.529 kb on - strand at 184.529 kb on - strand at 184.531 kb on - strand at 184.534 kb on + strand at 184.563 kb on + strand at 184.571 kb on - strand at 184.583 kb on + strand at 184.611 kb on - strand at 184.652 kb on + strand at 184.657 kb on + strand at 184.657 kb on + strand at 184.657 kb on + strand at 184.657 kb on + strand at 184.657 kb on + strand at 184.664 kb on + strand at 184.664 kb on + strand at 184.665 kb on - strand at 184.665 kb on - strand at 184.665 kb on - strand at 184.665 kb on - strand at 184.672 kb on - strand at 184.689 kb on - strand at 184.732 kb on + strand at 184.732 kb on + strand at 184.732 kb on + strand at 184.732 kb on + strand at 184.732 kb on + strand at 184.732 kb on + strand at 184.737 kb on + strand at 184.740 kb on - strand at 184.740 kb on - strand at 184.740 kb on - strand at 184.740 kb on - strand at 184.745 kb on - strand at 184.745 kb on - strand at 184.750 kb on - strand at 184.750 kb on - strand at 184.750 kb on - strand at 184.750 kb on - strand at 184.752 kb on + strand at 184.752 kb on + strand at 184.781 kb on - strand at 184.828 kb on - strand at 184.835 kb on + strand at 184.835 kb on + strand at 184.835 kb on + strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.913 kb on + strand at 184.926 kb on + strand at 184.970 kb on - strand at 184.970 kb on - strand at 184.970 kb on - strand at 185.635 kb on + strand, within HP15_p187g177 at 185.635 kb on + strand, within HP15_p187g177 at 185.640 kb on + strand, within HP15_p187g177 at 185.690 kb on - strand, within HP15_p187g177 at 185.800 kb on + strand, within HP15_p187g177 at 186.224 kb on + strand at 186.232 kb on - strand at 187.225 kb on - strand at 187.228 kb on - strand at 187.228 kb on - strand at 187.267 kb on - strand at 187.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 183,847 + HP15_p187g176 0.74 +0.1 183,855 - HP15_p187g176 0.75 -1.1 183,855 - HP15_p187g176 0.75 -1.5 183,855 - HP15_p187g176 0.75 -1.9 183,894 - HP15_p187g176 0.78 -2.2 183,946 - HP15_p187g176 0.81 -1.5 183,986 + HP15_p187g176 0.84 -1.5 184,009 + HP15_p187g176 0.86 -1.5 184,082 + -1.8 184,090 - -2.8 184,113 + -1.8 184,133 - -2.1 184,133 - -3.5 184,136 + -0.5 184,151 + -2.0 184,151 + -2.1 184,159 - -1.5 184,174 - +0.5 184,239 + -0.8 184,258 - -0.3 184,265 + +0.4 184,308 + +0.7 184,308 + -1.7 184,308 + +0.8 184,316 - +0.2 184,316 - +0.3 184,316 - +0.2 184,316 - -0.2 184,334 - -0.2 184,348 - -0.9 184,348 - -0.5 184,408 + -0.2 184,431 - +1.4 184,431 - -0.7 184,437 - -0.2 184,442 + +0.5 184,447 + +1.0 184,447 + +0.9 184,457 + +0.1 184,457 + +0.5 184,475 - +1.0 184,480 - -0.1 184,487 + -1.6 184,497 + -2.8 184,514 + +0.5 184,514 - -1.5 184,519 - +0.2 184,529 - -0.4 184,529 - +0.0 184,531 - -0.4 184,534 + -1.5 184,563 + +0.5 184,571 - -0.9 184,583 + -0.6 184,611 - +0.1 184,652 + -0.5 184,657 + -0.1 184,657 + -0.3 184,657 + -1.5 184,657 + +0.1 184,657 + -0.5 184,664 + -2.3 184,664 + -1.3 184,665 - +2.0 184,665 - -0.5 184,665 - +0.1 184,665 - -0.0 184,672 - +0.1 184,689 - +0.7 184,732 + -0.1 184,732 + -0.4 184,732 + -1.7 184,732 + +0.1 184,732 + +0.1 184,732 + -0.5 184,737 + -0.9 184,740 - -1.0 184,740 - -1.6 184,740 - +0.4 184,740 - +0.1 184,745 - -1.2 184,745 - +0.4 184,750 - +0.3 184,750 - +0.4 184,750 - -0.4 184,750 - -0.1 184,752 + +3.4 184,752 + -0.1 184,781 - +0.4 184,828 - -0.1 184,835 + -0.8 184,835 + +1.1 184,835 + -1.2 184,843 - -0.3 184,843 - -1.1 184,843 - -0.3 184,843 - -0.0 184,913 + -3.3 184,926 + +0.7 184,970 - -0.2 184,970 - +0.0 184,970 - -0.1 185,635 + HP15_p187g177 0.53 -1.9 185,635 + HP15_p187g177 0.53 +0.1 185,640 + HP15_p187g177 0.53 -2.0 185,690 - HP15_p187g177 0.56 -1.3 185,800 + HP15_p187g177 0.64 +0.1 186,224 + -1.6 186,232 - +0.3 187,225 - -1.2 187,228 - -1.1 187,228 - -0.2 187,267 - -0.8 187,267 - +0.2
Or see this region's nucleotide sequence