Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g177

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g176 and HP15_p187g177 are separated by 648 nucleotidesHP15_p187g177 and HP15_p187g178 are separated by 17 nucleotides HP15_p187g176: HP15_p187g176 - conserved hypothetical protein, at 182,847 to 184,196 _p187g176 HP15_p187g177: HP15_p187g177 - carboxyl-terminal protease-like protein, at 184,845 to 186,347 _p187g177 HP15_p187g178: HP15_p187g178 - membrane lipoprotein lipid attachment site-like protein, at 186,365 to 187,006 _p187g178 Position (kb) 184 185 186 187Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 183.847 kb on + strand, within HP15_p187g176at 183.855 kb on - strand, within HP15_p187g176at 183.855 kb on - strand, within HP15_p187g176at 183.855 kb on - strand, within HP15_p187g176at 183.894 kb on - strand, within HP15_p187g176at 183.946 kb on - strand, within HP15_p187g176at 183.986 kb on + strand, within HP15_p187g176at 184.009 kb on + strand, within HP15_p187g176at 184.082 kb on + strandat 184.090 kb on - strandat 184.113 kb on + strandat 184.133 kb on - strandat 184.133 kb on - strandat 184.136 kb on + strandat 184.151 kb on + strandat 184.151 kb on + strandat 184.159 kb on - strandat 184.174 kb on - strandat 184.239 kb on + strandat 184.258 kb on - strandat 184.265 kb on + strandat 184.308 kb on + strandat 184.308 kb on + strandat 184.308 kb on + strandat 184.316 kb on - strandat 184.316 kb on - strandat 184.316 kb on - strandat 184.316 kb on - strandat 184.334 kb on - strandat 184.348 kb on - strandat 184.348 kb on - strandat 184.408 kb on + strandat 184.431 kb on - strandat 184.431 kb on - strandat 184.437 kb on - strandat 184.442 kb on + strandat 184.447 kb on + strandat 184.447 kb on + strandat 184.457 kb on + strandat 184.457 kb on + strandat 184.475 kb on - strandat 184.480 kb on - strandat 184.487 kb on + strandat 184.497 kb on + strandat 184.514 kb on + strandat 184.514 kb on - strandat 184.519 kb on - strandat 184.529 kb on - strandat 184.529 kb on - strandat 184.531 kb on - strandat 184.534 kb on + strandat 184.563 kb on + strandat 184.571 kb on - strandat 184.583 kb on + strandat 184.611 kb on - strandat 184.652 kb on + strandat 184.657 kb on + strandat 184.657 kb on + strandat 184.657 kb on + strandat 184.657 kb on + strandat 184.657 kb on + strandat 184.664 kb on + strandat 184.664 kb on + strandat 184.665 kb on - strandat 184.665 kb on - strandat 184.665 kb on - strandat 184.665 kb on - strandat 184.672 kb on - strandat 184.689 kb on - strandat 184.732 kb on + strandat 184.732 kb on + strandat 184.732 kb on + strandat 184.732 kb on + strandat 184.732 kb on + strandat 184.732 kb on + strandat 184.737 kb on + strandat 184.740 kb on - strandat 184.740 kb on - strandat 184.740 kb on - strandat 184.740 kb on - strandat 184.745 kb on - strandat 184.745 kb on - strandat 184.750 kb on - strandat 184.750 kb on - strandat 184.750 kb on - strandat 184.750 kb on - strandat 184.752 kb on + strandat 184.752 kb on + strandat 184.781 kb on - strandat 184.828 kb on - strandat 184.835 kb on + strandat 184.835 kb on + strandat 184.835 kb on + strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.913 kb on + strandat 184.926 kb on + strandat 184.970 kb on - strandat 184.970 kb on - strandat 184.970 kb on - strandat 185.635 kb on + strand, within HP15_p187g177at 185.635 kb on + strand, within HP15_p187g177at 185.640 kb on + strand, within HP15_p187g177at 185.690 kb on - strand, within HP15_p187g177at 185.800 kb on + strand, within HP15_p187g177at 186.224 kb on + strandat 186.232 kb on - strandat 187.225 kb on - strandat 187.228 kb on - strandat 187.228 kb on - strandat 187.267 kb on - strandat 187.267 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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183,847 + HP15_p187g176 0.74 +0.1
183,855 - HP15_p187g176 0.75 -1.1
183,855 - HP15_p187g176 0.75 -1.5
183,855 - HP15_p187g176 0.75 -1.9
183,894 - HP15_p187g176 0.78 -2.2
183,946 - HP15_p187g176 0.81 -1.5
183,986 + HP15_p187g176 0.84 -1.5
184,009 + HP15_p187g176 0.86 -1.5
184,082 + -1.8
184,090 - -2.8
184,113 + -1.8
184,133 - -2.1
184,133 - -3.5
184,136 + -0.5
184,151 + -2.0
184,151 + -2.1
184,159 - -1.5
184,174 - +0.5
184,239 + -0.8
184,258 - -0.3
184,265 + +0.4
184,308 + +0.7
184,308 + -1.7
184,308 + +0.8
184,316 - +0.2
184,316 - +0.3
184,316 - +0.2
184,316 - -0.2
184,334 - -0.2
184,348 - -0.9
184,348 - -0.5
184,408 + -0.2
184,431 - +1.4
184,431 - -0.7
184,437 - -0.2
184,442 + +0.5
184,447 + +1.0
184,447 + +0.9
184,457 + +0.1
184,457 + +0.5
184,475 - +1.0
184,480 - -0.1
184,487 + -1.6
184,497 + -2.8
184,514 + +0.5
184,514 - -1.5
184,519 - +0.2
184,529 - -0.4
184,529 - +0.0
184,531 - -0.4
184,534 + -1.5
184,563 + +0.5
184,571 - -0.9
184,583 + -0.6
184,611 - +0.1
184,652 + -0.5
184,657 + -0.1
184,657 + -0.3
184,657 + -1.5
184,657 + +0.1
184,657 + -0.5
184,664 + -2.3
184,664 + -1.3
184,665 - +2.0
184,665 - -0.5
184,665 - +0.1
184,665 - -0.0
184,672 - +0.1
184,689 - +0.7
184,732 + -0.1
184,732 + -0.4
184,732 + -1.7
184,732 + +0.1
184,732 + +0.1
184,732 + -0.5
184,737 + -0.9
184,740 - -1.0
184,740 - -1.6
184,740 - +0.4
184,740 - +0.1
184,745 - -1.2
184,745 - +0.4
184,750 - +0.3
184,750 - +0.4
184,750 - -0.4
184,750 - -0.1
184,752 + +3.4
184,752 + -0.1
184,781 - +0.4
184,828 - -0.1
184,835 + -0.8
184,835 + +1.1
184,835 + -1.2
184,843 - -0.3
184,843 - -1.1
184,843 - -0.3
184,843 - -0.0
184,913 + -3.3
184,926 + +0.7
184,970 - -0.2
184,970 - +0.0
184,970 - -0.1
185,635 + HP15_p187g177 0.53 -1.9
185,635 + HP15_p187g177 0.53 +0.1
185,640 + HP15_p187g177 0.53 -2.0
185,690 - HP15_p187g177 0.56 -1.3
185,800 + HP15_p187g177 0.64 +0.1
186,224 + -1.6
186,232 - +0.3
187,225 - -1.2
187,228 - -1.1
187,228 - -0.2
187,267 - -0.8
187,267 - +0.2

Or see this region's nucleotide sequence