Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g169 and HP15_p187g170 are separated by 468 nucleotides
HP15_p187g169: HP15_p187g169 - hypothetical protein, at 174,141 to 174,305
_p187g169
HP15_p187g170: HP15_p187g170 - initiator RepB protein, at 174,774 to 175,991
_p187g170
Position (kb)
174
175 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 173.176 kb on - strand at 173.262 kb on - strand at 173.298 kb on + strand at 173.308 kb on - strand at 173.329 kb on - strand at 173.431 kb on + strand at 173.514 kb on + strand at 173.519 kb on + strand at 173.521 kb on - strand at 173.522 kb on - strand at 173.527 kb on - strand at 173.535 kb on + strand at 173.565 kb on - strand at 173.649 kb on + strand at 173.649 kb on + strand at 173.649 kb on + strand at 173.649 kb on + strand at 173.649 kb on + strand at 173.657 kb on - strand at 173.657 kb on - strand at 173.659 kb on - strand at 173.661 kb on + strand at 173.662 kb on + strand at 173.669 kb on - strand at 173.669 kb on - strand at 173.723 kb on - strand at 173.759 kb on + strand at 173.834 kb on - strand at 173.854 kb on - strand at 173.860 kb on - strand at 173.860 kb on - strand at 173.862 kb on - strand at 173.935 kb on + strand at 174.003 kb on + strand at 174.003 kb on + strand at 174.003 kb on + strand at 174.004 kb on + strand at 174.051 kb on - strand at 174.098 kb on - strand at 174.109 kb on + strand at 174.118 kb on + strand at 174.120 kb on + strand at 174.192 kb on - strand, within HP15_p187g169 at 174.192 kb on - strand, within HP15_p187g169 at 174.225 kb on - strand, within HP15_p187g169 at 174.236 kb on - strand, within HP15_p187g169 at 174.267 kb on + strand, within HP15_p187g169 at 174.287 kb on - strand, within HP15_p187g169 at 174.288 kb on - strand, within HP15_p187g169 at 174.292 kb on - strand at 174.317 kb on - strand at 174.317 kb on - strand at 174.341 kb on - strand at 174.341 kb on - strand at 174.342 kb on - strand at 174.344 kb on + strand at 174.372 kb on - strand at 174.442 kb on - strand at 174.451 kb on + strand at 174.459 kb on - strand at 174.459 kb on - strand at 174.460 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 173,176 - -0.5 173,262 - +0.0 173,298 + +1.5 173,308 - -0.9 173,329 - -1.1 173,431 + -0.1 173,514 + -1.0 173,519 + -0.3 173,521 - -0.1 173,522 - -0.3 173,527 - -1.2 173,535 + -1.2 173,565 - +0.1 173,649 + +1.1 173,649 + +0.0 173,649 + -0.5 173,649 + +0.1 173,649 + -0.2 173,657 - -0.2 173,657 - +1.6 173,659 - -0.5 173,661 + -0.7 173,662 + +0.0 173,669 - +0.6 173,669 - -0.5 173,723 - -1.1 173,759 + +1.0 173,834 - +1.9 173,854 - -2.5 173,860 - -1.1 173,860 - -0.3 173,862 - -0.7 173,935 + -0.2 174,003 + +0.2 174,003 + +1.8 174,003 + +0.9 174,004 + -0.2 174,051 - -0.5 174,098 - +0.4 174,109 + +1.2 174,118 + -0.8 174,120 + -0.7 174,192 - HP15_p187g169 0.31 -0.1 174,192 - HP15_p187g169 0.31 -0.3 174,225 - HP15_p187g169 0.51 -1.1 174,236 - HP15_p187g169 0.58 +0.3 174,267 + HP15_p187g169 0.76 -1.1 174,287 - HP15_p187g169 0.88 -1.4 174,288 - HP15_p187g169 0.89 -0.0 174,292 - +0.1 174,317 - +0.5 174,317 - +1.2 174,341 - -0.7 174,341 - -2.9 174,342 - -0.7 174,344 + +0.5 174,372 - -0.1 174,442 - -0.0 174,451 + +0.1 174,459 - -0.9 174,459 - -0.5 174,460 + -1.2
Or see this region's nucleotide sequence