Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g138

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g137 and HP15_p187g139 are separated by 296 nucleotidesHP15_p187g139 and HP15_p187g138 overlap by 12 nucleotidesHP15_p187g138 and HP15_p187g140 are separated by 561 nucleotidesHP15_p187g140 and HP15_p187g141 are separated by 243 nucleotides HP15_p187g137: HP15_p187g137 - outer membrane protein OprF, at 140,211 to 141,335 _p187g137 HP15_p187g139: HP15_p187g139 - hypothetical protein, at 141,632 to 141,796 _p187g139 HP15_p187g138: HP15_p187g138 - hypothetical protein, at 141,785 to 141,937 _p187g138 HP15_p187g140: HP15_p187g140 - hypothetical protein, at 142,499 to 142,651 _p187g140 HP15_p187g141: HP15_p187g141 - conjugative transfer protein, at 142,895 to 144,159 _p187g141 Position (kb) 141 142Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 140.803 kb on + strand, within HP15_p187g137at 140.803 kb on + strand, within HP15_p187g137at 140.811 kb on - strand, within HP15_p187g137at 140.811 kb on - strand, within HP15_p187g137at 140.811 kb on - strand, within HP15_p187g137at 140.891 kb on - strand, within HP15_p187g137at 140.910 kb on - strand, within HP15_p187g137at 140.911 kb on + strand, within HP15_p187g137at 140.919 kb on - strand, within HP15_p187g137at 140.923 kb on + strand, within HP15_p187g137at 140.936 kb on + strand, within HP15_p187g137at 140.936 kb on + strand, within HP15_p187g137at 140.936 kb on + strand, within HP15_p187g137at 140.944 kb on - strand, within HP15_p187g137at 140.944 kb on - strand, within HP15_p187g137at 140.944 kb on - strand, within HP15_p187g137at 140.957 kb on + strand, within HP15_p187g137at 140.965 kb on - strand, within HP15_p187g137at 140.989 kb on + strand, within HP15_p187g137at 140.989 kb on + strand, within HP15_p187g137at 140.989 kb on + strand, within HP15_p187g137at 140.989 kb on - strand, within HP15_p187g137at 140.991 kb on + strand, within HP15_p187g137at 140.997 kb on - strand, within HP15_p187g137at 140.997 kb on - strand, within HP15_p187g137at 141.018 kb on + strand, within HP15_p187g137at 141.020 kb on - strand, within HP15_p187g137at 141.048 kb on + strand, within HP15_p187g137at 141.056 kb on - strand, within HP15_p187g137at 141.130 kb on + strand, within HP15_p187g137at 141.130 kb on + strand, within HP15_p187g137at 141.130 kb on + strand, within HP15_p187g137at 141.135 kb on + strand, within HP15_p187g137at 141.138 kb on - strand, within HP15_p187g137at 141.138 kb on - strand, within HP15_p187g137at 141.138 kb on - strand, within HP15_p187g137at 141.138 kb on - strand, within HP15_p187g137at 141.138 kb on - strand, within HP15_p187g137at 141.153 kb on - strand, within HP15_p187g137at 141.252 kb on - strandat 141.258 kb on - strandat 141.259 kb on - strandat 141.411 kb on + strandat 141.416 kb on + strandat 141.416 kb on + strandat 141.424 kb on - strandat 141.424 kb on - strandat 141.424 kb on - strandat 141.424 kb on - strandat 141.450 kb on - strandat 141.457 kb on - strandat 141.458 kb on - strandat 141.458 kb on - strandat 141.464 kb on - strandat 141.491 kb on - strandat 141.491 kb on - strandat 141.524 kb on - strandat 141.636 kb on - strandat 141.648 kb on + strandat 141.679 kb on + strand, within HP15_p187g139at 141.692 kb on - strand, within HP15_p187g139at 141.746 kb on + strand, within HP15_p187g139at 141.769 kb on + strand, within HP15_p187g139at 141.777 kb on - strand, within HP15_p187g139at 141.777 kb on - strand, within HP15_p187g139at 141.777 kb on - strand, within HP15_p187g139at 141.795 kb on + strandat 141.829 kb on + strand, within HP15_p187g138at 141.892 kb on - strand, within HP15_p187g138at 141.941 kb on + strandat 141.949 kb on - strandat 141.949 kb on - strandat 142.020 kb on - strandat 142.039 kb on + strandat 142.067 kb on + strandat 142.067 kb on + strandat 142.067 kb on + strandat 142.075 kb on - strandat 142.110 kb on - strandat 142.132 kb on + strandat 142.133 kb on + strandat 142.140 kb on - strandat 142.141 kb on - strandat 142.191 kb on + strandat 142.227 kb on + strandat 142.257 kb on + strandat 142.259 kb on + strandat 142.266 kb on + strandat 142.275 kb on - strandat 142.298 kb on - strandat 142.303 kb on + strandat 142.308 kb on - strandat 142.311 kb on - strandat 142.320 kb on - strandat 142.347 kb on + strandat 142.357 kb on + strandat 142.357 kb on + strandat 142.372 kb on - strandat 142.416 kb on + strandat 142.429 kb on - strandat 142.429 kb on - strandat 142.430 kb on - strandat 142.430 kb on - strandat 142.430 kb on - strandat 142.474 kb on + strandat 142.487 kb on + strandat 142.504 kb on + strandat 142.512 kb on - strandat 142.522 kb on + strand, within HP15_p187g140at 142.522 kb on + strand, within HP15_p187g140at 142.547 kb on - strand, within HP15_p187g140at 142.551 kb on + strand, within HP15_p187g140at 142.587 kb on - strand, within HP15_p187g140at 142.589 kb on + strand, within HP15_p187g140at 142.602 kb on - strand, within HP15_p187g140at 142.602 kb on - strand, within HP15_p187g140at 142.609 kb on + strand, within HP15_p187g140at 142.611 kb on - strand, within HP15_p187g140at 142.611 kb on - strand, within HP15_p187g140at 142.646 kb on - strandat 142.651 kb on - strandat 142.701 kb on + strandat 142.701 kb on + strandat 142.709 kb on + strandat 142.724 kb on + strandat 142.724 kb on + strandat 142.732 kb on - strandat 142.753 kb on + strandat 142.776 kb on + strandat 142.886 kb on + strandat 142.921 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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140,803 + HP15_p187g137 0.53 +0.5
140,803 + HP15_p187g137 0.53 -0.7
140,811 - HP15_p187g137 0.53 +0.5
140,811 - HP15_p187g137 0.53 +0.1
140,811 - HP15_p187g137 0.53 -0.5
140,891 - HP15_p187g137 0.60 -0.7
140,910 - HP15_p187g137 0.62 +0.3
140,911 + HP15_p187g137 0.62 -0.6
140,919 - HP15_p187g137 0.63 -3.1
140,923 + HP15_p187g137 0.63 -0.3
140,936 + HP15_p187g137 0.64 -0.9
140,936 + HP15_p187g137 0.64 -0.4
140,936 + HP15_p187g137 0.64 -0.1
140,944 - HP15_p187g137 0.65 +0.6
140,944 - HP15_p187g137 0.65 +0.1
140,944 - HP15_p187g137 0.65 -0.6
140,957 + HP15_p187g137 0.66 -0.1
140,965 - HP15_p187g137 0.67 -0.0
140,989 + HP15_p187g137 0.69 +1.8
140,989 + HP15_p187g137 0.69 +0.3
140,989 + HP15_p187g137 0.69 -0.3
140,989 - HP15_p187g137 0.69 -0.3
140,991 + HP15_p187g137 0.69 +1.2
140,997 - HP15_p187g137 0.70 -1.5
140,997 - HP15_p187g137 0.70 +0.1
141,018 + HP15_p187g137 0.72 +0.1
141,020 - HP15_p187g137 0.72 +0.2
141,048 + HP15_p187g137 0.74 -0.0
141,056 - HP15_p187g137 0.75 -1.1
141,130 + HP15_p187g137 0.82 -0.9
141,130 + HP15_p187g137 0.82 +0.3
141,130 + HP15_p187g137 0.82 -0.6
141,135 + HP15_p187g137 0.82 -0.1
141,138 - HP15_p187g137 0.82 -0.1
141,138 - HP15_p187g137 0.82 +1.6
141,138 - HP15_p187g137 0.82 +1.5
141,138 - HP15_p187g137 0.82 -0.5
141,138 - HP15_p187g137 0.82 -0.8
141,153 - HP15_p187g137 0.84 -0.3
141,252 - +2.4
141,258 - -0.3
141,259 - +0.2
141,411 + +1.5
141,416 + -0.1
141,416 + +0.9
141,424 - +0.5
141,424 - +0.5
141,424 - +0.3
141,424 - +1.9
141,450 - -0.5
141,457 - -0.7
141,458 - -0.0
141,458 - -1.3
141,464 - -1.0
141,491 - +0.0
141,491 - +0.7
141,524 - -0.5
141,636 - +1.3
141,648 + +1.6
141,679 + HP15_p187g139 0.28 +1.9
141,692 - HP15_p187g139 0.36 -0.9
141,746 + HP15_p187g139 0.69 -2.2
141,769 + HP15_p187g139 0.83 +0.1
141,777 - HP15_p187g139 0.88 -1.5
141,777 - HP15_p187g139 0.88 +1.3
141,777 - HP15_p187g139 0.88 -0.3
141,795 + -0.8
141,829 + HP15_p187g138 0.29 -0.8
141,892 - HP15_p187g138 0.70 -1.3
141,941 + -1.5
141,949 - +0.2
141,949 - +1.1
142,020 - +1.0
142,039 + +1.3
142,067 + +0.1
142,067 + -0.5
142,067 + -1.3
142,075 - -0.3
142,110 - -1.6
142,132 + +0.7
142,133 + -0.4
142,140 - -0.9
142,141 - +0.7
142,191 + -0.4
142,227 + -5.3
142,257 + +0.4
142,259 + +0.1
142,266 + -0.0
142,275 - -0.1
142,298 - -0.8
142,303 + +0.2
142,308 - -0.3
142,311 - -0.9
142,320 - +0.9
142,347 + +0.2
142,357 + -2.1
142,357 + +0.2
142,372 - -0.1
142,416 + +0.7
142,429 - -0.3
142,429 - +0.4
142,430 - +0.4
142,430 - -0.0
142,430 - -0.6
142,474 + +0.5
142,487 + -0.5
142,504 + +0.0
142,512 - -1.0
142,522 + HP15_p187g140 0.15 -1.5
142,522 + HP15_p187g140 0.15 +0.4
142,547 - HP15_p187g140 0.31 +0.8
142,551 + HP15_p187g140 0.34 -0.2
142,587 - HP15_p187g140 0.58 -0.9
142,589 + HP15_p187g140 0.59 -0.1
142,602 - HP15_p187g140 0.67 +1.0
142,602 - HP15_p187g140 0.67 +0.3
142,609 + HP15_p187g140 0.72 -0.0
142,611 - HP15_p187g140 0.73 -0.8
142,611 - HP15_p187g140 0.73 +0.5
142,646 - -0.5
142,651 - -1.8
142,701 + -0.4
142,701 + -0.5
142,709 + +0.6
142,724 + +0.7
142,724 + -0.8
142,732 - +0.6
142,753 + +0.8
142,776 + +2.5
142,886 + +0.3
142,921 - -0.0

Or see this region's nucleotide sequence