Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g137 and HP15_p187g139 are separated by 296 nucleotides HP15_p187g139 and HP15_p187g138 overlap by 12 nucleotides HP15_p187g138 and HP15_p187g140 are separated by 561 nucleotides HP15_p187g140 and HP15_p187g141 are separated by 243 nucleotides
HP15_p187g137: HP15_p187g137 - outer membrane protein OprF, at 140,211 to 141,335
_p187g137
HP15_p187g139: HP15_p187g139 - hypothetical protein, at 141,632 to 141,796
_p187g139
HP15_p187g138: HP15_p187g138 - hypothetical protein, at 141,785 to 141,937
_p187g138
HP15_p187g140: HP15_p187g140 - hypothetical protein, at 142,499 to 142,651
_p187g140
HP15_p187g141: HP15_p187g141 - conjugative transfer protein, at 142,895 to 144,159
_p187g141
Position (kb)
141
142 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 140.803 kb on + strand, within HP15_p187g137 at 140.803 kb on + strand, within HP15_p187g137 at 140.811 kb on - strand, within HP15_p187g137 at 140.811 kb on - strand, within HP15_p187g137 at 140.811 kb on - strand, within HP15_p187g137 at 140.891 kb on - strand, within HP15_p187g137 at 140.910 kb on - strand, within HP15_p187g137 at 140.911 kb on + strand, within HP15_p187g137 at 140.919 kb on - strand, within HP15_p187g137 at 140.923 kb on + strand, within HP15_p187g137 at 140.936 kb on + strand, within HP15_p187g137 at 140.936 kb on + strand, within HP15_p187g137 at 140.936 kb on + strand, within HP15_p187g137 at 140.944 kb on - strand, within HP15_p187g137 at 140.944 kb on - strand, within HP15_p187g137 at 140.944 kb on - strand, within HP15_p187g137 at 140.957 kb on + strand, within HP15_p187g137 at 140.965 kb on - strand, within HP15_p187g137 at 140.989 kb on + strand, within HP15_p187g137 at 140.989 kb on + strand, within HP15_p187g137 at 140.989 kb on + strand, within HP15_p187g137 at 140.989 kb on - strand, within HP15_p187g137 at 140.991 kb on + strand, within HP15_p187g137 at 140.997 kb on - strand, within HP15_p187g137 at 140.997 kb on - strand, within HP15_p187g137 at 141.018 kb on + strand, within HP15_p187g137 at 141.020 kb on - strand, within HP15_p187g137 at 141.048 kb on + strand, within HP15_p187g137 at 141.056 kb on - strand, within HP15_p187g137 at 141.130 kb on + strand, within HP15_p187g137 at 141.130 kb on + strand, within HP15_p187g137 at 141.130 kb on + strand, within HP15_p187g137 at 141.135 kb on + strand, within HP15_p187g137 at 141.138 kb on - strand, within HP15_p187g137 at 141.138 kb on - strand, within HP15_p187g137 at 141.138 kb on - strand, within HP15_p187g137 at 141.138 kb on - strand, within HP15_p187g137 at 141.138 kb on - strand, within HP15_p187g137 at 141.153 kb on - strand, within HP15_p187g137 at 141.252 kb on - strand at 141.258 kb on - strand at 141.259 kb on - strand at 141.411 kb on + strand at 141.416 kb on + strand at 141.416 kb on + strand at 141.424 kb on - strand at 141.424 kb on - strand at 141.424 kb on - strand at 141.424 kb on - strand at 141.450 kb on - strand at 141.457 kb on - strand at 141.458 kb on - strand at 141.458 kb on - strand at 141.464 kb on - strand at 141.491 kb on - strand at 141.491 kb on - strand at 141.524 kb on - strand at 141.636 kb on - strand at 141.648 kb on + strand at 141.679 kb on + strand, within HP15_p187g139 at 141.692 kb on - strand, within HP15_p187g139 at 141.746 kb on + strand, within HP15_p187g139 at 141.769 kb on + strand, within HP15_p187g139 at 141.777 kb on - strand, within HP15_p187g139 at 141.777 kb on - strand, within HP15_p187g139 at 141.777 kb on - strand, within HP15_p187g139 at 141.795 kb on + strand at 141.829 kb on + strand, within HP15_p187g138 at 141.892 kb on - strand, within HP15_p187g138 at 141.941 kb on + strand at 141.949 kb on - strand at 141.949 kb on - strand at 142.020 kb on - strand at 142.039 kb on + strand at 142.067 kb on + strand at 142.067 kb on + strand at 142.067 kb on + strand at 142.075 kb on - strand at 142.110 kb on - strand at 142.132 kb on + strand at 142.133 kb on + strand at 142.140 kb on - strand at 142.141 kb on - strand at 142.191 kb on + strand at 142.227 kb on + strand at 142.257 kb on + strand at 142.259 kb on + strand at 142.266 kb on + strand at 142.275 kb on - strand at 142.298 kb on - strand at 142.303 kb on + strand at 142.308 kb on - strand at 142.311 kb on - strand at 142.320 kb on - strand at 142.347 kb on + strand at 142.357 kb on + strand at 142.357 kb on + strand at 142.372 kb on - strand at 142.416 kb on + strand at 142.429 kb on - strand at 142.429 kb on - strand at 142.430 kb on - strand at 142.430 kb on - strand at 142.430 kb on - strand at 142.474 kb on + strand at 142.487 kb on + strand at 142.504 kb on + strand at 142.512 kb on - strand at 142.522 kb on + strand, within HP15_p187g140 at 142.522 kb on + strand, within HP15_p187g140 at 142.547 kb on - strand, within HP15_p187g140 at 142.551 kb on + strand, within HP15_p187g140 at 142.587 kb on - strand, within HP15_p187g140 at 142.589 kb on + strand, within HP15_p187g140 at 142.602 kb on - strand, within HP15_p187g140 at 142.602 kb on - strand, within HP15_p187g140 at 142.609 kb on + strand, within HP15_p187g140 at 142.611 kb on - strand, within HP15_p187g140 at 142.611 kb on - strand, within HP15_p187g140 at 142.646 kb on - strand at 142.651 kb on - strand at 142.701 kb on + strand at 142.701 kb on + strand at 142.709 kb on + strand at 142.724 kb on + strand at 142.724 kb on + strand at 142.732 kb on - strand at 142.753 kb on + strand at 142.776 kb on + strand at 142.886 kb on + strand at 142.921 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 140,803 + HP15_p187g137 0.53 +0.5 140,803 + HP15_p187g137 0.53 -0.7 140,811 - HP15_p187g137 0.53 +0.5 140,811 - HP15_p187g137 0.53 +0.1 140,811 - HP15_p187g137 0.53 -0.5 140,891 - HP15_p187g137 0.60 -0.7 140,910 - HP15_p187g137 0.62 +0.3 140,911 + HP15_p187g137 0.62 -0.6 140,919 - HP15_p187g137 0.63 -3.1 140,923 + HP15_p187g137 0.63 -0.3 140,936 + HP15_p187g137 0.64 -0.9 140,936 + HP15_p187g137 0.64 -0.4 140,936 + HP15_p187g137 0.64 -0.1 140,944 - HP15_p187g137 0.65 +0.6 140,944 - HP15_p187g137 0.65 +0.1 140,944 - HP15_p187g137 0.65 -0.6 140,957 + HP15_p187g137 0.66 -0.1 140,965 - HP15_p187g137 0.67 -0.0 140,989 + HP15_p187g137 0.69 +1.8 140,989 + HP15_p187g137 0.69 +0.3 140,989 + HP15_p187g137 0.69 -0.3 140,989 - HP15_p187g137 0.69 -0.3 140,991 + HP15_p187g137 0.69 +1.2 140,997 - HP15_p187g137 0.70 -1.5 140,997 - HP15_p187g137 0.70 +0.1 141,018 + HP15_p187g137 0.72 +0.1 141,020 - HP15_p187g137 0.72 +0.2 141,048 + HP15_p187g137 0.74 -0.0 141,056 - HP15_p187g137 0.75 -1.1 141,130 + HP15_p187g137 0.82 -0.9 141,130 + HP15_p187g137 0.82 +0.3 141,130 + HP15_p187g137 0.82 -0.6 141,135 + HP15_p187g137 0.82 -0.1 141,138 - HP15_p187g137 0.82 -0.1 141,138 - HP15_p187g137 0.82 +1.6 141,138 - HP15_p187g137 0.82 +1.5 141,138 - HP15_p187g137 0.82 -0.5 141,138 - HP15_p187g137 0.82 -0.8 141,153 - HP15_p187g137 0.84 -0.3 141,252 - +2.4 141,258 - -0.3 141,259 - +0.2 141,411 + +1.5 141,416 + -0.1 141,416 + +0.9 141,424 - +0.5 141,424 - +0.5 141,424 - +0.3 141,424 - +1.9 141,450 - -0.5 141,457 - -0.7 141,458 - -0.0 141,458 - -1.3 141,464 - -1.0 141,491 - +0.0 141,491 - +0.7 141,524 - -0.5 141,636 - +1.3 141,648 + +1.6 141,679 + HP15_p187g139 0.28 +1.9 141,692 - HP15_p187g139 0.36 -0.9 141,746 + HP15_p187g139 0.69 -2.2 141,769 + HP15_p187g139 0.83 +0.1 141,777 - HP15_p187g139 0.88 -1.5 141,777 - HP15_p187g139 0.88 +1.3 141,777 - HP15_p187g139 0.88 -0.3 141,795 + -0.8 141,829 + HP15_p187g138 0.29 -0.8 141,892 - HP15_p187g138 0.70 -1.3 141,941 + -1.5 141,949 - +0.2 141,949 - +1.1 142,020 - +1.0 142,039 + +1.3 142,067 + +0.1 142,067 + -0.5 142,067 + -1.3 142,075 - -0.3 142,110 - -1.6 142,132 + +0.7 142,133 + -0.4 142,140 - -0.9 142,141 - +0.7 142,191 + -0.4 142,227 + -5.3 142,257 + +0.4 142,259 + +0.1 142,266 + -0.0 142,275 - -0.1 142,298 - -0.8 142,303 + +0.2 142,308 - -0.3 142,311 - -0.9 142,320 - +0.9 142,347 + +0.2 142,357 + -2.1 142,357 + +0.2 142,372 - -0.1 142,416 + +0.7 142,429 - -0.3 142,429 - +0.4 142,430 - +0.4 142,430 - -0.0 142,430 - -0.6 142,474 + +0.5 142,487 + -0.5 142,504 + +0.0 142,512 - -1.0 142,522 + HP15_p187g140 0.15 -1.5 142,522 + HP15_p187g140 0.15 +0.4 142,547 - HP15_p187g140 0.31 +0.8 142,551 + HP15_p187g140 0.34 -0.2 142,587 - HP15_p187g140 0.58 -0.9 142,589 + HP15_p187g140 0.59 -0.1 142,602 - HP15_p187g140 0.67 +1.0 142,602 - HP15_p187g140 0.67 +0.3 142,609 + HP15_p187g140 0.72 -0.0 142,611 - HP15_p187g140 0.73 -0.8 142,611 - HP15_p187g140 0.73 +0.5 142,646 - -0.5 142,651 - -1.8 142,701 + -0.4 142,701 + -0.5 142,709 + +0.6 142,724 + +0.7 142,724 + -0.8 142,732 - +0.6 142,753 + +0.8 142,776 + +2.5 142,886 + +0.3 142,921 - -0.0
Or see this region's nucleotide sequence