Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g27 and HP15_p42g28 are separated by 15 nucleotides HP15_p42g28 and HP15_p42g29 are separated by 0 nucleotides HP15_p42g29 and HP15_p42g30 are separated by 29 nucleotides HP15_p42g30 and HP15_p42g31 are separated by 13 nucleotides HP15_p42g31 and HP15_p42g32 are separated by 144 nucleotides HP15_p42g32 and HP15_p42g33 overlap by 4 nucleotides
HP15_p42g27: HP15_p42g27 - TraC DNA primase, at 21,954 to 25,115
_p42g27
HP15_p42g28: HP15_p42g28 - conserved hypothetical protein, at 25,131 to 25,385
_p42g28
HP15_p42g29: HP15_p42g29 - hypothetical protein, at 25,386 to 25,562
_p42g29
HP15_p42g30: HP15_p42g30 - YacC protein, at 25,592 to 26,452
_p42g30
HP15_p42g31: HP15_p42g31 - conserved hypothetical protein, secreted, at 26,466 to 26,819
_p42g31
HP15_p42g32: HP15_p42g32 - hypothetical protein, at 26,964 to 27,095
_p42g32
HP15_p42g33: HP15_p42g33 - protein containing resolvase N-terminal domain, at 27,092 to 27,727
_p42g33
Position (kb) 25
26
27 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 24.599 kb on + strand, within HP15_p42g27 at 24.607 kb on - strand, within HP15_p42g27 at 24.619 kb on - strand, within HP15_p42g27 at 24.648 kb on + strand, within HP15_p42g27 at 24.654 kb on - strand, within HP15_p42g27 at 24.726 kb on - strand, within HP15_p42g27 at 24.778 kb on + strand, within HP15_p42g27 at 24.801 kb on + strand at 24.801 kb on + strand at 24.804 kb on - strand at 24.821 kb on - strand at 24.821 kb on - strand at 24.841 kb on + strand at 24.850 kb on - strand at 24.854 kb on + strand at 24.854 kb on + strand at 24.857 kb on - strand at 24.862 kb on + strand at 24.862 kb on + strand at 24.870 kb on - strand at 24.870 kb on - strand at 24.872 kb on + strand at 24.872 kb on + strand at 24.872 kb on + strand at 24.872 kb on + strand at 24.877 kb on + strand at 24.880 kb on - strand at 24.880 kb on - strand at 24.880 kb on - strand at 24.882 kb on + strand at 24.885 kb on - strand at 24.894 kb on + strand at 24.902 kb on - strand at 24.904 kb on + strand at 24.904 kb on + strand at 24.912 kb on - strand at 24.921 kb on + strand at 24.929 kb on - strand at 24.929 kb on - strand at 24.966 kb on + strand at 24.974 kb on - strand at 24.976 kb on + strand at 24.978 kb on - strand at 25.004 kb on + strand at 25.004 kb on + strand at 25.009 kb on + strand at 25.011 kb on - strand at 25.017 kb on - strand at 25.017 kb on - strand at 25.019 kb on + strand at 25.066 kb on - strand at 25.066 kb on - strand at 25.066 kb on - strand at 25.138 kb on + strand at 25.170 kb on + strand, within HP15_p42g28 at 25.172 kb on - strand, within HP15_p42g28 at 25.179 kb on - strand, within HP15_p42g28 at 25.198 kb on - strand, within HP15_p42g28 at 25.231 kb on - strand, within HP15_p42g28 at 25.380 kb on + strand at 25.380 kb on + strand at 25.386 kb on - strand at 25.388 kb on - strand at 25.388 kb on - strand at 25.429 kb on + strand, within HP15_p42g29 at 25.520 kb on + strand, within HP15_p42g29 at 25.528 kb on - strand, within HP15_p42g29 at 25.530 kb on + strand, within HP15_p42g29 at 25.530 kb on + strand, within HP15_p42g29 at 25.530 kb on + strand, within HP15_p42g29 at 25.530 kb on + strand, within HP15_p42g29 at 25.530 kb on + strand, within HP15_p42g29 at 25.535 kb on + strand, within HP15_p42g29 at 25.535 kb on + strand, within HP15_p42g29 at 25.538 kb on - strand, within HP15_p42g29 at 25.538 kb on - strand, within HP15_p42g29 at 25.538 kb on - strand, within HP15_p42g29 at 25.579 kb on + strand at 25.605 kb on - strand at 25.617 kb on + strand at 25.617 kb on + strand at 25.630 kb on + strand at 25.633 kb on + strand at 25.637 kb on - strand at 25.674 kb on - strand at 25.696 kb on - strand, within HP15_p42g30 at 25.696 kb on - strand, within HP15_p42g30 at 25.701 kb on - strand, within HP15_p42g30 at 25.752 kb on - strand, within HP15_p42g30 at 25.768 kb on + strand, within HP15_p42g30 at 25.768 kb on + strand, within HP15_p42g30 at 25.882 kb on - strand, within HP15_p42g30 at 25.908 kb on + strand, within HP15_p42g30 at 25.933 kb on - strand, within HP15_p42g30 at 25.947 kb on - strand, within HP15_p42g30 at 25.985 kb on + strand, within HP15_p42g30 at 26.005 kb on + strand, within HP15_p42g30 at 26.006 kb on - strand, within HP15_p42g30 at 26.006 kb on - strand, within HP15_p42g30 at 26.013 kb on - strand, within HP15_p42g30 at 26.074 kb on + strand, within HP15_p42g30 at 26.137 kb on + strand, within HP15_p42g30 at 26.150 kb on - strand, within HP15_p42g30 at 26.162 kb on - strand, within HP15_p42g30 at 26.183 kb on + strand, within HP15_p42g30 at 26.242 kb on + strand, within HP15_p42g30 at 26.250 kb on - strand, within HP15_p42g30 at 26.290 kb on + strand, within HP15_p42g30 at 26.290 kb on + strand, within HP15_p42g30 at 26.303 kb on + strand, within HP15_p42g30 at 26.337 kb on + strand, within HP15_p42g30 at 26.343 kb on + strand, within HP15_p42g30 at 26.409 kb on + strand at 26.462 kb on - strand at 26.485 kb on + strand at 26.485 kb on + strand at 26.485 kb on + strand at 26.485 kb on + strand at 26.485 kb on + strand at 26.493 kb on - strand at 26.493 kb on - strand at 26.493 kb on - strand at 26.605 kb on + strand, within HP15_p42g31 at 26.607 kb on + strand, within HP15_p42g31 at 26.607 kb on + strand, within HP15_p42g31 at 26.661 kb on - strand, within HP15_p42g31 at 26.662 kb on - strand, within HP15_p42g31 at 26.663 kb on + strand, within HP15_p42g31 at 26.690 kb on + strand, within HP15_p42g31 at 26.698 kb on - strand, within HP15_p42g31 at 26.767 kb on - strand, within HP15_p42g31 at 26.783 kb on + strand, within HP15_p42g31 at 26.791 kb on + strand at 26.791 kb on - strand at 26.994 kb on + strand, within HP15_p42g32 at 27.014 kb on + strand, within HP15_p42g32 at 27.027 kb on - strand, within HP15_p42g32 at 27.133 kb on + strand at 27.179 kb on - strand, within HP15_p42g33 at 27.179 kb on - strand, within HP15_p42g33 at 27.181 kb on - strand, within HP15_p42g33 at 27.192 kb on - strand, within HP15_p42g33 at 27.252 kb on + strand, within HP15_p42g33 at 27.252 kb on + strand, within HP15_p42g33 at 27.260 kb on - strand, within HP15_p42g33 at 27.260 kb on - strand, within HP15_p42g33 at 27.320 kb on - strand, within HP15_p42g33 at 27.330 kb on + strand, within HP15_p42g33 at 27.343 kb on - strand, within HP15_p42g33 at 27.415 kb on + strand, within HP15_p42g33
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 24,599 + HP15_p42g27 0.84 +0.3 24,607 - HP15_p42g27 0.84 -1.1 24,619 - HP15_p42g27 0.84 -0.2 24,648 + HP15_p42g27 0.85 +0.2 24,654 - HP15_p42g27 0.85 -0.4 24,726 - HP15_p42g27 0.88 -0.7 24,778 + HP15_p42g27 0.89 +0.4 24,801 + -0.7 24,801 + +0.5 24,804 - +0.1 24,821 - +1.8 24,821 - -0.6 24,841 + +0.2 24,850 - -0.9 24,854 + +2.9 24,854 + +1.0 24,857 - +0.0 24,862 + -0.3 24,862 + -0.1 24,870 - +0.6 24,870 - -0.6 24,872 + -0.2 24,872 + -0.1 24,872 + +1.2 24,872 + +0.9 24,877 + +0.0 24,880 - -0.9 24,880 - -0.3 24,880 - +0.1 24,882 + +0.4 24,885 - +0.2 24,894 + +1.8 24,902 - -0.1 24,904 + +0.3 24,904 + +0.4 24,912 - +0.8 24,921 + +0.8 24,929 - +0.4 24,929 - +0.2 24,966 + +0.1 24,974 - +0.5 24,976 + -0.9 24,978 - -0.2 25,004 + -1.5 25,004 + -0.9 25,009 + +0.1 25,011 - -3.0 25,017 - +1.1 25,017 - +0.1 25,019 + +0.7 25,066 - -0.7 25,066 - +1.1 25,066 - +0.3 25,138 + -0.1 25,170 + HP15_p42g28 0.15 +1.1 25,172 - HP15_p42g28 0.16 +0.2 25,179 - HP15_p42g28 0.19 -0.5 25,198 - HP15_p42g28 0.26 +0.2 25,231 - HP15_p42g28 0.39 +2.0 25,380 + -1.3 25,380 + -0.0 25,386 - +0.2 25,388 - -0.1 25,388 - -0.5 25,429 + HP15_p42g29 0.24 +2.8 25,520 + HP15_p42g29 0.76 -1.7 25,528 - HP15_p42g29 0.80 -0.8 25,530 + HP15_p42g29 0.81 +0.3 25,530 + HP15_p42g29 0.81 -0.9 25,530 + HP15_p42g29 0.81 -0.0 25,530 + HP15_p42g29 0.81 +0.5 25,530 + HP15_p42g29 0.81 -0.7 25,535 + HP15_p42g29 0.84 -0.1 25,535 + HP15_p42g29 0.84 -0.3 25,538 - HP15_p42g29 0.86 -3.8 25,538 - HP15_p42g29 0.86 +0.1 25,538 - HP15_p42g29 0.86 -1.3 25,579 + +0.7 25,605 - +1.2 25,617 + +0.4 25,617 + +0.0 25,630 + -0.2 25,633 + +1.5 25,637 - +0.4 25,674 - +1.0 25,696 - HP15_p42g30 0.12 +0.8 25,696 - HP15_p42g30 0.12 -0.1 25,701 - HP15_p42g30 0.13 +2.8 25,752 - HP15_p42g30 0.19 +0.2 25,768 + HP15_p42g30 0.20 +0.3 25,768 + HP15_p42g30 0.20 +0.3 25,882 - HP15_p42g30 0.34 +0.6 25,908 + HP15_p42g30 0.37 +0.4 25,933 - HP15_p42g30 0.40 +0.2 25,947 - HP15_p42g30 0.41 +0.2 25,985 + HP15_p42g30 0.46 -0.5 26,005 + HP15_p42g30 0.48 +0.1 26,006 - HP15_p42g30 0.48 +0.1 26,006 - HP15_p42g30 0.48 -0.9 26,013 - HP15_p42g30 0.49 -0.1 26,074 + HP15_p42g30 0.56 -1.0 26,137 + HP15_p42g30 0.63 +0.3 26,150 - HP15_p42g30 0.65 +0.7 26,162 - HP15_p42g30 0.66 +1.5 26,183 + HP15_p42g30 0.69 +0.5 26,242 + HP15_p42g30 0.75 -0.2 26,250 - HP15_p42g30 0.76 +0.7 26,290 + HP15_p42g30 0.81 +0.8 26,290 + HP15_p42g30 0.81 +1.1 26,303 + HP15_p42g30 0.83 -0.2 26,337 + HP15_p42g30 0.87 +0.1 26,343 + HP15_p42g30 0.87 +0.9 26,409 + +0.2 26,462 - -0.3 26,485 + +0.4 26,485 + -0.7 26,485 + +0.5 26,485 + +0.0 26,485 + -1.8 26,493 - -0.4 26,493 - -0.7 26,493 - -0.6 26,605 + HP15_p42g31 0.39 +0.1 26,607 + HP15_p42g31 0.40 -0.9 26,607 + HP15_p42g31 0.40 -1.2 26,661 - HP15_p42g31 0.55 -0.0 26,662 - HP15_p42g31 0.55 -1.3 26,663 + HP15_p42g31 0.56 -0.7 26,690 + HP15_p42g31 0.63 -0.1 26,698 - HP15_p42g31 0.66 -0.7 26,767 - HP15_p42g31 0.85 +0.7 26,783 + HP15_p42g31 0.90 +0.6 26,791 + -0.7 26,791 - -2.3 26,994 + HP15_p42g32 0.23 -1.0 27,014 + HP15_p42g32 0.38 +0.5 27,027 - HP15_p42g32 0.48 -0.7 27,133 + -1.2 27,179 - HP15_p42g33 0.14 -0.1 27,179 - HP15_p42g33 0.14 -0.8 27,181 - HP15_p42g33 0.14 +0.8 27,192 - HP15_p42g33 0.16 -0.5 27,252 + HP15_p42g33 0.25 -0.5 27,252 + HP15_p42g33 0.25 -0.1 27,260 - HP15_p42g33 0.26 -0.5 27,260 - HP15_p42g33 0.26 -1.1 27,320 - HP15_p42g33 0.36 +0.8 27,330 + HP15_p42g33 0.37 +0.2 27,343 - HP15_p42g33 0.39 +1.1 27,415 + HP15_p42g33 0.51 +0.5
Or see this region's nucleotide sequence